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Benjamin Wolfe

@benwolfe.bsky.social
1.4K followers 252 following 49 posts

Associate Professor Tufts University Ecology/evolution of microbes in food systems. Constant gardener.

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Benjamin Wolfe @benwolfe.bsky.social · 09/09/2026
Over the past decade, a toxic fungus that destroys cheese rinds has been popping up in cheese caves throughout New England. In a new paper from my lab, we tried to better understand this emerging threat to New England's artisan cheese industry. doi.org/10.1128/aem....
Cheese rinds contaminated with Aspergillus westerdijkiae
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Fungal Ecology 🍄 @fungal-ecology.bsky.social · 05/06/2026
Do forest fungi prefer to grow in/on specific substrates? Two new papers, including one in Fungal Ecology, examine substrate specificity of boreal forest fungi. doi.org/10.1016/j.fu... doi.org/10.1111/mec.... @tedersoo.bsky.social @drhyfe.bsky.social @sundymaurice.bsky.social
A graph from the paper "Fungi-substrate association patterns in boreal forests" in Fungal Ecology showing sharing of indicators among forest substrates. A) Marginal estimates of the relative abundance of indicator OTUs across substrates, with site and substrate as fixed factors. Substrates with similar letters do not differ significantly (α = 0.05). B) Numbers of indicator OTUs of each forest substrate (left bars) and in other substrates (right bars). Bar height is proportional to the number of OTUs. Grey bars on the left represent OTUs that occur exclusively in the indicated substrate.
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Nature Microbiology @natmicrobiol.nature.com · 05/06/2026
Out Now! Communicating microbiology effectively #MicroSky
go.nature.com
Communicating microbiology effectively
Nature Microbiology, Published online: 04 June 2026; doi:10.1038/s41564-026-02396-2Effective science communication can help scientists shape impactful research questions, and crucially it can foster curiosity, showcase the importance of research and encourage support and engagement from non-scientists.
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Mark Mandel @markjmandel.bsky.social · 30/03/2026
Apply to be an editor at an ASM Journal! Open call for editors at mBio, mSphere, mSystems, and Microbiology Spectrum. This is a very fulfilling way to share your expertise and give back to our society journals. @asm.org journals.asm.org/asm-call-for...
journals.asm.org
ASM Journals Open Calls for Editors
A list of current and upcoming open calls for editors at ASM Journals.
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Benjamin Wolfe @benwolfe.bsky.social · 12/02/2026
The science writing over at @asimovpress.bsky.social is fantastic! From the origin of the lab vortex, to the history of Xenopus, their content is creative, beautiful, and thoughtfully researched. Consider assigning some of their pieces in science courses. www.asimov.press/p/vortex?utm...
asimov.press
Making the Vortex Mixer
The forgotten story of an invention found in every biology lab.
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Fungal Ecology 🍄 @fungal-ecology.bsky.social · 03/02/2026
The superb lyrebird makes remarkable songs in Australian forests. It also displaces ∼150 tonnes per hectare per year of litter/soil in search of food. A new paper in Fungal Ecology explores how fungi respond to the lyrebird's disturbances: doi.org/10.1016/j.fu... www.youtube.com/watch?v=VjE0...
youtube.com
Amazing! Bird Sounds From The Lyre Bird - David Attenborough - BBC Wildlife
YouTube video by BBC Studios
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Jonathan Cazabonne @jonathancazabonne.bsky.social · 14/01/2026
📣 The deadline for this @britmycolsoc.org.uk special issue on fungal conservation has been extended to 15th March 2026. Spread the word and don’t hesitate to contact @cfemycolab.bsky.social or me if you have any questions. We’re looking forward to receiving your submissions! 🍄
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David Rust @incredulis.bsky.social · 05/12/2025
It’s bad. At least a dozen people have ingested Death Cap mushrooms in the Bay Area, especially in the South Bay. We are trying to get the word out with local health and parks agencies and distributing a warning poster in Spanish. Please be careful when picking wild mushrooms. bayareamushrooms.org.
bayareamushrooms.org
Bay Area Mycological Society
The Bay Area Mycological Society is a group of mushroom enthusiasts, based in the East Bay, dedicated the art and science of wild mushrooms. We sponsor local mushroom walks, meet at UC Berkeley, and p...
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Jason Stajich @hyphaltip.bsky.social · 16/10/2025
Registration open for #Fungal26 genetics-gsa.org/fungal-2026/ at Asilomar.
genetics-gsa.org
Homepage - 33rd Fungal Genetics Conference
Visit our website to learn more.
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British Mycological Society @britmycolsoc.org.uk · 19/09/2025
🍄🌱 Gardens can be fungal hotspots — if we let them! In this blog for #UKFungusDay, Jassy Drakulic @jassydrak.bsky.social at The RHS explores how garden practices can encourage (or suppress) fungi & why that matters for #SoilHealth & #Biodiversity. www.ukfungusday.co.uk/fungiingardens #Gardening
A group of orange mushrooms growing in grass next to a dry-stone wall.
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Benjamin Wolfe @benwolfe.bsky.social · 16/09/2025
Such a delight to share our work on the evolution of a cheese rind fungus in @currentbiology.bsky.social. This is the fantastic PhD work of @nicolasleonlouw.bsky.social and resulted from amazing collaborations, a wedding proposal(!), an undergrad course, & more! 🧵 www.cell.com/current-biol...
cell.com
Long-term monitoring of a North American cheese cave reveals mechanisms and consequences of fungal adaptation
Using a unique longitudinal sampling approach, Louw et al. demonstrate how a cheese-associated Penicillium population has adapted in an artisan cheese production facility in Vermont, USA. Adaptation i...
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British Mycological Society @britmycolsoc.org.uk · 28/08/2025
📣 Call for papers! Special issue of #FungalEcology on “Fungal conservation: from knowledge to actions” co-edited by Susana C. Gonçalves @cfemycolab.bsky.social & Jonathan Cazabonne @jonathancazabonne.bsky.social. Deadline for manuscripts: 31 Jan 2026. Find out more: www.linkedin.com/company/brit...
Cover of the BMS's Fungal Ecology journal
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Jonathan Cazabonne @jonathancazabonne.bsky.social · 25/08/2025
Thrilled to announce that the special issue on fungal #conservation that @cfemycolab.bsky.social and I are co-editing for the @britmycolsoc.org.uk c.org.uk journal Fungal Ecology is open for submissions! www.sciencedirect.com/special-issu...
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angela oliverio @oliverio.bsky.social · 22/08/2025
New lab pre-print up! "Twelve species of human parasites make up half the literature on microbial eukaryotes" doi.org/10.1101/2025... We (led by UG Joanna Lepper and with @hbrappap.bsky.social) quantified all mentions of protist species in the scientific literature 🧵 #protistsonsky #microsky
doi.org
Twelve species of human parasites make up half of the literature on microbial eukaryotes
Although microbial eukaryotes comprise the majority of eukaryotic phylogenetic diversity and inhabit nearly all ecosystems globally, most research focuses on only a few species of human parasites. Her...
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Tami Lieberman @contaminatedsci.bsky.social · 22/07/2025
We are on the lookout for postdocs for two different projects at the intersection of ecology, evolution, and the human microbiome. See thread for more information and reach out!
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Benjamin Wolfe @benwolfe.bsky.social · 09/06/2025
Huge thanks to the amazing team at @currentbiology.bsky.social for highlighting fungi in this special issue. Many excellent reviews and perspectives from so many mycological heroes. Lots of great material to use in teaching/outreach. 🍄
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angela oliverio @oliverio.bsky.social · 25/03/2025
We are hiring a postdoctoral scholar to join us in the sometime in the next ~6 months. oliveriolab.org with a focus on microbial eukaryotes in extreme environments. Please email w/CV if you'd like to chat. Official ad soon. #MicroSky #MicrobiomeSky #ProtistsOnSky
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Primrose Boynton @pjboynton.bsky.social · 08/03/2025
Check out my latest paper on fitness costs and benefits of hosting a killer virus if you're a yeast in the forest! www.sciencedirect.com/science/arti...
Schematic of lab and field experiments testing for yeast fitness with and without killer viruses. Panel A depicts a classical fitness assay in which a yeast with a virus (or cured of the virus) is cultured with a viral toxin-resistant reference strain and the number of doublings is compared between the two yeasts. Panel B diagrams field chambers made of 12-ml tubes in which a membrane holding yeast cells lines the mouth of the tube; the tube is then buried next to a tree. Panel C depicts a field experiment with the chambers. Yeasts hosting (or cured of) viruses are mixed with virus toxin-resistant reference cells, put onto chamber membranes, and incubated in soil for fifteen days. The relative ratios of tested and reference strains are then used as a proxy for fitness.
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Leonora Bittleston @leonorabit.bsky.social · 20/02/2025
Send us your exciting microbial ecology and evolution manuscripts! Embracing the systems complexity of microbial ecology and evolution: call for papers | mSystems journals.asm.org/doi/10.1128/...
journals.asm.org
Embracing the systems complexity of microbial ecology and evolution: call for papers | mSystems
Microbial ecology and evolution are broad disciplines that seek to understand the underlying processes that drive the diversification, distributions, and dynamics of microbial cells, populations, comm...
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Colette Delawalla, PhD @cdelawalla.bsky.social · 10/02/2025
Get in dorks, we're going protesting! STAND UP FOR SCIENCE WITH US ON MARCH 7TH, 2025 WASHINGTON DC AND EVERY STATE CAPITOL Because science is for everyone! Find us at standupforscience2025.org #standupforscience2025 #scienceforall #sciencenotsilence
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Colette Delawalla, PhD @cdelawalla.bsky.social · 09/02/2025
Get in Dorks, we are going protesting. STAND UP FOR SCIENCE. MARCH 7th 12-4pm. DC AND YOUR STATE CAPITALS. More information to come.
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 08/02/2025
Intraspecies associations from strain-rich metagenome samples www.biorxiv.org/content/10.1101/202…
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Katie Hinde @mammalssuck.bsky.social · 08/02/2025
And Academic T&P committees, maybe take a beat & consider how the continuous & unsustainable push for CV conspicuous production has been a competitive inhibitor of scientists & scholars being engaged in their communities in meaningful ways as a bulwark to the shitstorm happening now.
media.tenor.com
a woman in a black and white jacket is sitting at a table in a diner .
Alt: a woman in a black and white jacket is sitting at a table in a diner saying "There, I said it."
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Geoff Zahn @geoffzahn.bsky.social · 07/02/2025
That's how it's done! Nice and easy. Good job Mycological Society of America.
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Tami Lieberman @contaminatedsci.bsky.social · 31/01/2025
Interested in doing a postdoc at the intersection of microbial ecology and agricultural engineering? We are recruiting for a collaborative project with me and Chris Voigt, Darcy McRose, Dave DesMarias, and Sixian You. See project announcement and reach out: jwafs.mit.edu/projects/202...
jwafs.mit.edu
Food security in Africa through microbiome engineering | Abdul Latif Jameel Water and Food Systems Lab (J-WAFS)
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Benjamin Wolfe @benwolfe.bsky.social · 31/01/2025
Our NSF-funded basic research in microbiology is providing useful knowledge/training/data for US food businesses that support rural economies. This workshop was one of the most rewarding projects I've worked on as a scientist. now.tufts.edu/2025/01/28/t...
now.tufts.edu
‘These Cheeses Have a Life, They Have a Story’
After a microbiology workshop, cheesemakers and mongers have a new way to talk about their tasty, funky products.
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Mark A. Anthony @anthomycota.bsky.social · 24/01/2025
How does variation in ectomycorrhizal fungal diversity affect tree growth? What are the knowledge gaps to more fully answering this question? See my review out today in Fungal Ecology: doi.org/10.1016/j.fu...
A red Amanita fruiting with leaf litter around
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Dave Baltrus 🦦 @surtlab.bsky.social · 23/01/2025
Gentle reminder that if you truly value diversity in the workforce, top down executive orders may/will change implementation but it shouldn’t change your dedication to building the best possible team/group/cohort/generation of researchers
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Benjamin Wolfe @benwolfe.bsky.social · 19/12/2024
I am super excited to work with @fungaldreamteam.bsky.social‬ as co-EIC at Fungal Ecology! We have amazing editors who prioritize high-quality science and careful review of your manuscripts. Please consider sending your work to Fungal Ecology in 2025!
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🧬Jacob L Steenwyk @jlsteenwyk.bsky.social · 08/12/2024
Have questions about #bioinformatics, #genomics, #evolution or stuck on a project? 🧬💻 I want to help! Happy to discuss data, figures, writing, academia/industry or chatting just for kicks—no strings attached Drop questions below, DM, or schedule a meeting Science together is better than alone 🙌
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Bork Group at EMBL Heidelberg @borklab.bsky.social · 07/12/2024
Everyone talks about "strains", but what are they? Within the lab, we often come back to the review "Diversity within species: interpreting strains in microbiomes" by Thea Van Rossum (2020) when discussing at which phylogenetic resolution we do see different signals www.nature.com/artic...
nature.com
Diversity within species: interpreting strains in microbiomes
Nature Reviews Microbiology - Large-scale metagenomic analyses are vastly increasing the rate of discovery of variation within species but they are also leading to scientific and semantic...
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Anthony Amend @fungaloha.bsky.social · 26/11/2024
RP PLS! Iʻm hiring 3 postdocs at U Hawaiʻi to study yeast diversity and evolution, marine fungi, and the genomics of microbiomes in experimental foodwebs. All of these projects have existing datasets and LATITUDE to pursue individual interests and "blue sky" ideas www.dropbox.com/scl/fi/5d7u4...
A researcher on a boardwalk in a DANK hawaiian forest on Molokai.
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microbialfoods.org @microbialfoods-org.bsky.social · 28/11/2024
We are excited to join this growing community! Microbialfoods.org is an education and outreach platform for fermented food consumers, producers, enthusiasts, and scientists. Please check out our website for accessible information about the microbes that make delicious ferments!
microbialfoods.org
Microbial Foods - The Science Of Fermented Foods
A scientific resource for producers, purveyors, and enthusiasts of artisan microbial foods.
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Benjamin Wolfe @benwolfe.bsky.social · 28/11/2024
I really enjoyed chatting with Mark about the ecology of fermented food microbial communities!
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Laura Helmuth @laurahelmuth.bsky.social · 14/11/2024
Things get better through long-term thinking, investments in research, wide and welcoming collaborations, honest education, mentorship and sponsorship, not catastrophizing failure, justice, hope, and solidarity. xoxoxo www.scientificamerican.com/article/appl... (13/13)
scientificamerican.com
Apples Have Never Tasted So Delicious. Here’s Why
Apple experts divide time into “before Honeycrisp” and “after Honeycrisp,” and apples have never tasted so good
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Cameron Thrash @jcamthrash.bsky.social · 08/11/2024
We're hiring a lab technician to help with high-throughput culturing and other aspects of our research. Please help spread the word. Find out more and apply using the link below. Requisition ID: REQ20156462 usccareers.usc.edu/job/los-ange...
usccareers.usc.edu
Research Lab Technician II at USC
Learn more about applying for Research Lab Technician II at USC
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Benjamin Wolfe @benwolfe.bsky.social · 05/11/2024
We had fun thinking about the future of fermented foods in this review for @currentbiology.bsky.social www.sciencedirect.com/science/arti...
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angela oliverio @oliverio.bsky.social · 18/09/2024
Happy to share our effort to understand the role of acetic acid bacteria in sourdough starter microbiomes using genomics + synthetic experiments! Led by @hbrappap.bsky.social and w/ @benwolfe.bsky.social @nimshika.bsky.social and @saerobe.bsky.social journals.asm.org/doi/10.1128/... #microsky
journals.asm.org
Genomics and synthetic community experiments uncover the key metabolic roles of acetic acid bacteria in sourdough starter microbiomes | mSystems
This study is a comprehensive genomic and ecological survey of acetic acid bacteria (AAB) isolated from sourdough starters. By combining comparative genomics with manipulative experiments using synthe...
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Benjamin Wolfe @benwolfe.bsky.social · 09/03/2024
The Camembertpocalypse is fake news! Also proud of my “sweet buttery flatulence” quote. Enjoy your cheese and worry about the big stuff! www.washingtonpost.com/food/2024/03...
washingtonpost.com
Will brie and Camembert cheeses go extinct? Here’s what scientists say.
Worries over French cheeses have spread since a study warned they’re “on the verge of extinction.” But a future without brie is not yet in the cards.
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Benjamin Wolfe @benwolfe.bsky.social · 17/02/2024
I knew long before the rat with a giant penis that Frontiers journals are bad for science. My lab does not publish there, review for them, and we almost never cite Frontiers papers. If we all do this, Frontiers will fade and science will be stronger. www.vice.com/en/article/4...
vice.com
Study Featuring AI-Generated Giant Rat Penis Retracted, Journal Apologizes
A peer-reviewed study featured nonsensical AI images including a giant rat penis in the latest example of how generative AI has seeped into academia.
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Noah Fierer @noahfierer.bsky.social · 21/12/2023
New paper out from my group - a practical guide to machine learning in microbial ecology. Hope it is useful! journals.asm.org/doi/10.1128/...
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Anthony Amend @fungaloha.bsky.social · 20/11/2023
Please spread the word about 3 tenure track, hard-money microbiome faculty positions. These are well-resourced, come with their own grants, few teaching requirements (but lots of opportunities), potential footprint in our marine lab. www.schooljobs.com/careers/hawa...
schooljobs.com
Career Opportunities at the University of Hawai'i | University of Hawai'i
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Sara Mitri @saramitri.bsky.social · 05/12/2023
Our department is recruiting a tenure-track Assistant Professor on microbial interactions linked to the NCCR Microbiomes nccr-microbiomes.ch Don't miss this opportunity to join a friendly, dynamic department in a city with hard-to-beat quality of life. Apply tinyurl.com/4k2mevax by Jan 31!
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Benjamin Wolfe @benwolfe.bsky.social · 30/11/2023
Sent out some trainee love on our Slack today. This is a tough time of the year for many for a lot of reasons. Check in on your people and be kind to yourself and others. Grateful for the many folks who have checked in on me in the past. ❤️
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Benjamin Wolfe @benwolfe.bsky.social · 07/11/2023
Great application of genome-scale metabolic models to understand the dynamics of sourdough starter microbial communities. www.sciencedirect.com/science/arti...
sciencedirect.com
The rise of the sourdough: Genome-scale metabolic modeling-based approach to design sourdough starte...
Sourdough starters harbor microbial consortia that benefit the final product's aroma and volume. The complex nature of these spontaneously developed c…
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Lukas Large @lukaslarge.bsky.social · 03/11/2023
Fungi the new book by Lynne Boddy and Ali Ashby is out now 🍄 www.dk.com/uk/book/9780...
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Benjamin Wolfe @benwolfe.bsky.social · 07/11/2023
Hugely impressed with the quality of genomic/transcriptomic services at @seqcoast.bsky.social! We've processed several orders with them and they are fast, have competitive prices, produce high quality data, and are happy to work with diverse samples from academic researchers. seqcoast.com/services/
seqcoast.com
Services - SeqCoast Genomics
Fast Insights. Friendly Service. Sequencing and bioinformatics from microbial genomics experts Short read whole genome sequencing, Illumina Our short read sequencing service provides 150bp paired end ...
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Benjamin Wolfe @benwolfe.bsky.social · 21/09/2023
Excited to share our review in Annual Review of Microbiology on microbiome assembly in fermented foods. We tried to write an accessible review of the mechanisms/processes that shape microbial communities across a range of ferments. Enjoy! www.annualreviews.org/doi/full/10....
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Benjamin Wolfe @benwolfe.bsky.social · 12/09/2023
Going to need a bigger rain gauge if we keep having rain like we did this summer. This all fell last night in ~ 2 hours. Hoping everyone in Central MA stays safe and dries out soon. (Sorry for inches… I ❤️ metric system!).
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Benjamin Wolfe @benwolfe.bsky.social · 10/09/2023
Step one in making cheese curd agar.
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