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Philippe Le Mercier, ViralZone

@viralzone.bsky.social
161 followers 157 following 71 posts

Virologist

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Reposted by Philippe Le Mercier, ViralZone
EMBL-EBI @ebi.embl.org · 24/09/2026
Is the world prepared for a future pandemic? AI-predicted protein complex structures for 2,800 viruses known to infect humans are now openly available in the #AlphaFold Database, which could improve how we respond to emerging infectious disease outbreaks. Learn more: www.embl.org/news/science...
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Reposted by Philippe Le Mercier, ViralZone
Daniel Hurdiss @danielhurdiss.bsky.social · 21/09/2026
Excited to share that our norovirus NS3 study is now online in Nature Communications! 🎉 These enzymes, found across an entire order of RNA viruses, have long been molecular motors in search of a function. We think we’ve uncovered their role. (🧵) www.nature.com/articles/s41... #virology #cryoEM
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Reposted by Philippe Le Mercier, ViralZone
Cell - a Cell Press journal @cp-cell.bsky.social · 23/09/2026
Now online! Direct cell-to-cell transmission of retrotransposons
dlvr.it
Direct cell-to-cell transmission of retrotransposons
Retrotransposons can infect neighboring cells using a mechanism that relies on a small fusogen-like protein rather than on the envelope protein that is typically required for infection.
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Philippe Le Mercier, ViralZone @viralzone.bsky.social · 22/09/2026
A clever new tool for building full icosahedral capsids from AlphaFold models — from the talented team behind ViperDB. FoldaVirus, a knowledge-based icosahedral capsid prediction tool using AlphaFold www.pnas.org/doi/10.1073/...
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Reposted by Philippe Le Mercier, ViralZone
Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 19/09/2026
BFVD v3 contains 5.8M viral protein structures, 16× more than v2; 75% high quality, filling a major gap in AFDB coverage. It fully covers 72.6% of reference proteomes and spans 72.7% of ICTV species. Great work by @eunbelivable.bsky.social et al. 📄 www.biorxiv.org/content/10.6... 🌐 bfvd.foldseek.com
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Reposted by Philippe Le Mercier, ViralZone
Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 01/08/2026
Riboseek is a fast RNA/DNA search. More sensitive than nhmmer at 250x speed. Structure-aware realignment produces MSAs approaching rMSA quality. Plus 1.7M precomputed RNA MSAs, and an API to search your own 📄 www.biorxiv.org/content/10.6... 💾 github.com/steineggerla... 🌐 search.foldseek.com/riboseek
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Reposted by Philippe Le Mercier, ViralZone
Antigen Evolution & Design Lab @antigenevo.bsky.social · 14/07/2026
First paper with the lab's affiliation!! ✨✨ summarising some of the cool concepts that the Antigen Evolution & Design Lab will be working on! Together with amazing collaborators @mghafari.bsky.social and @grovearmada.bsky.social www.annualreviews.org/content/jour...
annualreviews.org
Studying the Deep Evolution of Viruses in the Era of Artificial Intelligence Structure Prediction
High mutation rates erode viral sequence similarity, obscuring deep evolutionary history. While protein structure is far more conserved than sequence, its use in evolutionary studies has historically ...
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Reposted by Philippe Le Mercier, ViralZone
European Virus Bioinformatics Center @evbc.bsky.social · 11/09/2026
AI structure prediction is opening a new window onto deep virus evolution, helping classify viral dark matter, infer protein function and develop structural phylogenies 🧬🤖 #VirusEvolution #AI 📄 doi.org/10.1146/annurev-virology-10… 👤 EVBC member: Spyros Lytras
doi.org
Studying the Deep Evolution of Viruses in the Era of Artificial Intelligence Structure Prediction
High mutation rates erode viral sequence similarity, obscuring deep evolutionary history. While protein structure is far more conserved than sequence, its use in evolutionary studies has historically been bottlenecked by experimental determination. The recent revolution in artificial intelligence (A...
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Reposted by Philippe Le Mercier, ViralZone
Arbovirus seminars @arbovirus.bsky.social · 11/09/2026
Come join us for the first seminar of the series - some fascinating work by Zhouming Liu on La Crosse Virus infection. All welcome - just email us for a Zoom link.
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Reposted by Philippe Le Mercier, ViralZone
Microbes.Info @microbesinfo.bsky.social · 11/09/2026
🦠💊 Researchers identified a highly potent compound that blocks #Ebola #virus #infection, offering a promising starting point for developing new #antiviral treatments. #Drugs #BiomedicalResearch #Microsky via @sciencex.bsky.social medicalxpress.com/news/2026-09...
medicalxpress.com
Highly potent compound that blocks Ebola virus entry discovered
A University of Minnesota–led multi-institutional research team has discovered a highly potent small molecule that blocks Ebola virus entry by stabilizing the virus's entry protein and provides…
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Reposted by Philippe Le Mercier, ViralZone
Christina Warinner @christinawarinner.bsky.social · 11/09/2026
A huge congratulations to Tessa Zeibig for her first dissertation publication about ancient parvovirus B19! It was such a pleasure to collaborate on this study!
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Philippe Le Mercier, ViralZone @viralzone.bsky.social · 11/09/2026
Mechanism of membrane perforation in rotavirus cell entry | Science www.science.org/doi/10.1126/...
science.org
Mechanism of membrane perforation in rotavirus cell entry
Cell entry of nonenveloped animal viruses requires translocation of a macromolecular assembly across a cellular membrane. Double-stranded RNA viruses introduce into the target cell an inner capsid par...
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Reposted by Philippe Le Mercier, ViralZone
The Virologist 🇳🇱🤙 @thevirologist.bsky.social · 08/09/2026
www.nature.com/articles/s41... @mackayim.bsky.social
nature.com
A divergent betacoronavirus with a functional furin cleavage site in South American bats - Nature Communications
There is still limited data reported on virus diversity in South American bats. In this study, the authors report a divergent betacoronavirus with a functional furin cleavage site in South American ba...
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Reposted by Philippe Le Mercier, ViralZone
Thelonevirologist @thelonevirologist.bsky.social · 31/08/2026
Ebola death toll approaches 3,000, as case-fatality rate hovers around 50% www.cidrap.umn.edu/ebola/ebola-...
cidrap.umn.edu
Ebola death toll approaches 3,000, as case-fatality rate hovers around 50%
Total cases have passed 6,000 in DR Congo.
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Reposted by Philippe Le Mercier, ViralZone
Torsten Schwede @torstenschwede.bsky.social · 31/08/2026
Can we predict the stoichiometry of proteins in a complex from their sequences - fast and accurately? Congratulations to the #ECCB2026 🧬 proceedings paper award 🎉 @daniil-litvinov.bsky.social @ninjani.bsky.social @cellarchlab.com academic.oup.com/bioinformati...
Proceedings paper “Stoic: fast and accurate protein stoichiometry prediction”
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Reposted by Philippe Le Mercier, ViralZone
Daniel Hurdiss @danielhurdiss.bsky.social · 30/08/2026
A dual-receptor checkpoint primes enterovirus D68 for respiratory cell entry | @natcomms.nature.com www.nature.com/articles/s41...
nature.com
A dual-receptor checkpoint primes enterovirus D68 for respiratory cell entry - Nature Communications
Liang et al. show how enterovirus D68 uses the respiratory receptor MFSD6 and sugar modifications to enter cells, revealing a checkpoint that primes the virus for infection.
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Reposted by Philippe Le Mercier, ViralZone
Ed Rybicki 🇿🇲🇿🇦🇬🇧🍷🚀 @edrybicki.bsky.social · 30/08/2026
That is frightening…! People in the US, tell your friends who are even scratched by a wild animal, or bitten by a pet they don’t know, to get rabies prophylaxis!!
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Reposted by Philippe Le Mercier, ViralZone
Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 30/08/2026
Run AlphaFold2 locally in your browser via WebGPU, no installation needed, it's just a static webpage using your own GPU or CPU. Short proteins run in seconds. Larger ones are still slow: a 291-aa protein takes ~7 minutes on my M4 Pro. ❗It's just a PoC. 🌐 martin-steinegger.github.io/alphafold2-w...
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Reposted by Philippe Le Mercier, ViralZone
Evgenii Protasov @evgenii-protasov.bsky.social · 30/08/2026
Large eukaryotic DNA viruses encode ESCRT machinery for membrane remodelling #microbiology #viruses #DNA #eukaryotes #MicroSky @natmicrobiol.nature.com doi.org/10.1038/s415...
doi.org
Large eukaryotic DNA viruses encode ESCRT machinery for membrane remodelling - Nature Microbiology
A genomic screen reveals homologues of ESCRT components in mirusviruses that infect unicellular aquatic eukaryotes.
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Reposted by Philippe Le Mercier, ViralZone
Ed Rybicki 🇿🇲🇿🇦🇬🇧🍷🚀 @edrybicki.bsky.social · 21/08/2026
Delhi Faces Surge in H1N1 and Dengue Cases
thechenabtimes.com
Delhi Faces Surge in H1N1 and Dengue Cases
Delhi and NCR witness a significant rise in H1N1 (swine flu) and dengue cases due to humid monsoon weather. Experts urge preventive measures and timely medical consultation.
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Reposted by Philippe Le Mercier, ViralZone
artificialscience.bsky.social @artificialscience.bsky.social · 20/08/2026
Claude designed protein binders for 14 of 15 targets. The most capable protein designer in commercial use is also the one most restricted in virology. Here's what that means for pandemic preparedness. #Claude #Binders #Pandemicpreparedness #Virology artificialscience.org/2026/08/clau...
artificialscience.org
Claude can design proteins, but it can't help you study viruses — Artificial Science
Anthropic published a wet-lab-validated protein binder result on 18 August 2026, then disclosed an 11-month biosecurity classifier gap. The two stories together explain why the world's most capable pr...
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Reposted by Philippe Le Mercier, ViralZone
Tulio de Oliveira @tuliodna.bsky.social · 22/06/2026
Great visuals from the Global Disease Burden showing that both communicable and infectious diseases in decreasing quality of live in the world. Novo Nordisk Foundation Global Science Sunmit
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Philippe Le Mercier, ViralZone @viralzone.bsky.social · 18/06/2026
🧵1/3 Virus size matters! Ebolavirus particles are among the largest viruses known to infect humans. Individual particles often package multiple genome copies. Virus size: viralzone.expasy.org/5216 ViralZone ebolavirus: viralzone.expasy.org/11865
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Reposted by Philippe Le Mercier, ViralZone
RCSB Protein Data Bank @rcsbpdb.bsky.social · 14/06/2026
‘Treasure trove’ of antiviral proteins could inspire powerful molecular tools Two research teams mined genomic data from bacteria to create databases containing thousands of antiviral defence proteins that could inspire powerful biotechnologies.
nature.com
‘Treasure trove’ of antiviral proteins could inspire powerful molecular tools
Nature - Two research teams mined genomic data from bacteria to create databases containing thousands of antiviral defence proteins that could inspire powerful biotechnologies.
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Reposted by Philippe Le Mercier, ViralZone
Karim Majzoub @karimaj.bsky.social · 25/05/2026
Scavenger receptor class F member 2 is an intracellular receptor for hepatitis B virus
cell.com
Scavenger receptor class F member 2 is an intracellular receptor for hepatitis B virus
Li et al. identified SCARF2 as an intracellular receptor for HBV entry that directs internalized HBV to nuclear pore complexes and facilitates nucleocapsid release from endosomes.
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Philippe Le Mercier, ViralZone @viralzone.bsky.social · 20/05/2026
virological.org/t/initial-ge...
virological.org
Initial genomes from May 2026 Bundibugyo Virus Disease Outbreak in the Democratic Republic of the Congo and Uganda
Initial genomes from May 2026 Bundibugyo Virus Disease Outbreak in the Democratic Republic of the Congo and Uganda, reveal a new spillover event Context On 15 May 2026, the Ministry of Public Health, ...
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Reposted by Philippe Le Mercier, ViralZone
Ian M. Mackay, PhD (he/him) 🦠🤧🧬📑🦟🧀 @mackayim.bsky.social · 19/05/2026
A rough guide to the location of the latest outbreak of infection and disease caused by a virus from the species of orthoebolaviruses called 𝘖𝘳𝘵𝘩𝘰𝘦𝘣𝘰𝘭𝘢𝘷𝘪𝘳𝘶𝘴 𝘣𝘶𝘯𝘥𝘪𝘣𝘶𝘨𝘺𝘰𝘦𝘯𝘴𝘦 affecting eastern Democratic Republic of the Congo and Kampala, in Uganda.
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Reposted by Philippe Le Mercier, ViralZone
The Guardian @theguardian.com · 15/05/2026
Ebola outbreak kills 65 people in eastern Democratic Republic of the Congo
theguardian.com
Ebola outbreak kills 65 people in eastern Democratic Republic of the Congo
Concerns raised that cases were caused by a new strain of the virus as African health officials race to coordinate and contain the infection An outbreak of Ebola has killed 65 people in the Democratic Republic of the Congo, according to African health officials. There have been 246 suspected cases of the deadly haemorrhagic fever reported so far in Ituri province, which shares borders with Uganda and South Sudan. Continue reading...
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Philippe Le Mercier, ViralZone @viralzone.bsky.social · 13/05/2026
Need accurate graphics of Hantavirus virions? ViralZone has you covered. Free to use in any media, modify as needed—just cite the source (CC BY license). viralzone.expasy.org/resources/An...
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Philippe Le Mercier, ViralZone @viralzone.bsky.social · 13/05/2026
ViralZone Andes virus resource now includes comprehensive outbreak data from the 2026 cruise ship incident. New additions: expanded fact sheets, dedicated glycoprotein pages, complete variant information, and an updated virion illustration. viralzone.expasy.org/11845
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Reposted by Philippe Le Mercier, ViralZone
Mart Krupovic @mkrupovic.bsky.social · 11/05/2026
With Eugene Koonin, we wrote a rather comprehensive review on the origin, evolution and organization of the #virosphere. We describe all 10 viral realms and the logic behind them, and so much more. Check it out! comptes-rendus.academie-sciences.fr/biologies/ar...
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Reposted by Philippe Le Mercier, ViralZone
Dr Emma Hodcroft @firefoxx66.bsky.social · 10/05/2026
My ANDV #Hantavirus @nextstrain.org phylogenies now pull directly from @pathoplexus.org to incorporate all seqs I'll continue to improve them, & will keep them updated Change the Tip Labels in the left-hand menu. You can see links to all builds, plus tanglegrams at: nextstrain.org/groups/hodcr...
A phylogenetic tree showing linked sequences from the S and L segment of ANDV virus (Andes Hantavirus)
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Reposted by Philippe Le Mercier, ViralZone
Pathoplexus @pathoplexus.org · 09/05/2026
1/ 🚀 Pathoplexus now supports the Andes variant of Hantavirus (ANDV). ANDV is the variant identified in the recent MV Hondius cases, & the Hantavirus variant previously identified as having occasional human-to-human transmission. pathoplexus.org/andv #hantavirus #hondius
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Philippe Le Mercier, ViralZone @viralzone.bsky.social · 08/05/2026
virological.org/t/complete-s...
virological.org
Complete sequence of Orthohantavirus andesense virus: Swiss resident 2026
Posted on behalf of the Swiss National Reference Center for Emerging Viral Infections, Geneva University Hospitals and the Institute of Medical Virology, University of Zurich (Partner Laboratory Natio...
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Philippe Le Mercier, ViralZone @viralzone.bsky.social · 07/05/2026
Geneva University Hospital has identified the hantavirus responsible for the outbreak on a cruise ship as Andes virus. This is one of the rare hantaviruses known to be capable of human-to-human transmission. www.hug.ch/en/actualite...
hug.ch
Hantavirus outbreak on a cruise ship : The HUG have identified the strain of the virus
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Reposted by Philippe Le Mercier, ViralZone
Stefan Pöhlmann @snpoehlm.bsky.social · 21/04/2026
A NEW PHASE OF SARS-COV-2 EVOLUTION? The evolution of SARS-CoV-2 has followed a familiar pattern: new variants emerged, spread rapidly across the globe, and replaced their predecessors - triggering successive waves of infection.
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Reposted by Philippe Le Mercier, ViralZone
Tominaga K. (tomiken) @pacyc184.bsky.social · 20/04/2026
Identification of hot spring Obelisk-like RNA replicons and expanded diversity of the Obelisk superfamily | Nature Communications www.nature.com/articles/s41467-026-…
nature.com
Identification of hot spring Obelisk-like RNA replicons and expanded diversity of the Obelisk superfamily - Nature Communications
In this study, the authors identify circular RNAs replicating in high-temperature hot spring environments and demonstrate that ccc RNA replicons belonging to the Obelisk superfamily are more diverse and widespread than previously recognized, revealing hidden RNA systems in natural environments.
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Reposted by Philippe Le Mercier, ViralZone
Thelonevirologist @thelonevirologist.bsky.social · 20/04/2026
New transcription signals in SARS-CoV-2 reshape virus–host interactions journals.plos.org/plosbiology/...
journals.plos.org
New transcription signals in SARS-CoV-2 reshape virus–host interactions
Non-spike changes driving SARS-CoV-2 fitness remain undiscovered. This Primer comments on two PLOS Biology papers that show that evolutionary N gene mutations create a transcription-regulating sequenc...
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Reposted by Philippe Le Mercier, ViralZone
Outbreak News Today @outbreaknews.bsky.social · 20/04/2026
Argentina reports hundreds of new chikungunya cases open.substack.com/pub/outbreak...
open.substack.com
Argentina reports hundreds of new chikungunya cases
In a follow-up on the chikungunya outbreak in Argentina, the Argentina National Epidemiological Surveillance System (BEN) reports 268 new cases of chikungunya fever during the week ending April 11.
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Reposted by Philippe Le Mercier, ViralZone
Dorian McILROY @dmcilroy.bsky.social · 02/04/2026
I have the pleasure of giving a talk at this year's SFV meeting.
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Philippe Le Mercier, ViralZone @viralzone.bsky.social · 30/03/2026
What shapes the human DNA virome? Analysis of blood & saliva shows persistent viruses (EBV, HHV-6B, HHV-7, anelloviruses), with viral load varying by age, higher in men, and influenced by host genetics (MHC, ERAP1, ERAP2).
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Philippe Le Mercier, ViralZone @viralzone.bsky.social · 27/03/2026
The official taxonomy of viruses have just been updated ictv.global/news/MSL41 Updated data in: ICTV 2025 master species list (MSL41) ictv.global/msl Virus Metadata Resource 2025 (MSL41) ictv.global/vmr
ictv.global
Master Species Lists (MSL) | ICTV
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Reposted by Philippe Le Mercier, ViralZone
European Conference on Computational Biology @eccb-europe.bsky.social · 06/03/2026
🎉 Registration for ECCB 2026 is now open! Join the computational biology community in Geneva for 5 days of science & collaboration. Organized by the @sib.swiss Institute of Bioinformatics. ⏰ Early bird until 31 March 📆 31 Aug - 4 Sep 2026 👉 eccb2026.org/registration... #eccb2026 #GenevaLovesData
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Reposted by Philippe Le Mercier, ViralZone
Waggoner Lab @labwaggoner.bsky.social · 19/03/2026
Preprint: Identification and structural characterisation of a picornavirus integrin receptor with an essential role of two distinct glycans for virus infection www.researchsquare.com/article/rs-9...
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Reposted by Philippe Le Mercier, ViralZone
Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 17/03/2026
AlphaFold database has entered the era of complexes. Together with NVIDIA, DeepMind and EBI, we use ColabFold, OpenFold and MMseqs2-GPU to predict ~31 million complexes (homo & hetro-dimers) resulting in 1.8 million high-quality predictions 📄 research.nvidia.com/labs/dbr/ass... 🌐 alphafold.ebi.ac.uk
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Reposted by Philippe Le Mercier, ViralZone
Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 17/03/2026
@ecallaway.bsky.social wrote a news article on our AlphaFold complex work. Thank you for covering it. 📄 www.nature.com/articles/d41...
nature.com
AlphaFold hits ‘next level’: the AI database now includes protein pairing
The database of 200 million protein-structure predictions now includes homodimers, adding new biological relevance.
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Reposted by Philippe Le Mercier, ViralZone
Nature @nature.com · 17/03/2026
Nature research paper: Structures of Marburgvirus glycoprotein and its complex with NPC1 receptor go.nature.com/4urU3yb
go.nature.com
Structures of Marburgvirus glycoprotein and its complex with NPC1 receptor - Nature
Marburgvirus glycoprotein binds to the endosomal receptor NPC1 in a distinct orientation with higher affinity compared with Ebola virus glycoprotein, accompanied by fusion-relevant rearrangements, enabling more efficient viral entry.
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Reposted by Philippe Le Mercier, ViralZone
Nature @nature.com · 09/03/2026
Scientists say they have made some of the first direct measurements of how long it takes an individual, ordinary protein to fold – and the results were surprising. go.nature.com/3N4UrSD
go.nature.com
How fast does a protein fold? Real-time technique captures the moment
Proteins assume complex 3D shapes even faster than does DNA, which is a simpler molecule.
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Philippe Le Mercier, ViralZone @viralzone.bsky.social · 10/03/2026
Influenza A(H3N2) subclade K (J.2.4.1) dominated this winter (>80% of infections in the Northern Hemisphere). Baseline antibody titers to subclade K variants were lower than to other H1N1/H3N2 strains—and vaccine-induced responses were also significantly weaker. jamanetwork.com/journals/jam...
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Reposted by Philippe Le Mercier, ViralZone
Sorek Lab @soreklab.bsky.social · 05/03/2026
Out today: We discovered new viral proteins that target immune signaling molecules, solely based on their AlphaFold-predicted shapes www.science.org/doi/10.1126/... Congrats Nitzan Tal and coauthors! Thank you Kranzusch lab for the fun collaboration! Linking below previous thread on our findings
science.org
Structural modeling reveals phage proteins that manipulate bacterial immune signaling
Immune systems in animals, plants, and bacteria often rely on intracellular nucleotide signaling, which viruses can block by sequestering or degrading these signals. We identified structural and bioph...
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