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RCSB Protein Data Bank

@rcsbpdb.bsky.social
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RCSB PDB (RCSB.org) promotes a structural view of biology. Funded by NSF, NCI, NIAID, NIGMS, NIH, and DOE

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RCSB Protein Data Bank @rcsbpdb.bsky.social · 11h
wwPDB Foundation Poster Prize at Protein Society Meeting Congratulations to Gayathri Ayyar Manjula (Northeastern) for Structure Based Analysis to Distinguish Canonical Enzymes, Noncanonical Enzymes & Catalytically Inactive Pseudoenzymes in an Enzyme Superfamily www.rcsb.org/news/fe...
Top: Gayathri Ayyar Manjula with mentor Mary Jo Ondrechen
Bottom: Mentor Connie Jeffery (left) and Gayathri Ayyar Manjula (right)
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 29/09/2026
Celebrate #NationalCoffeeDay with this video. Both adenosine and caffeine bind to adenosine receptors located on neurons. Caffeine, the antagonist, blocks the receptor, while adenosine, the agonist, produces the biological response upon binding.
pdb101.rcsb.org
PDB101: Learn: Videos: Caffeine and Adenosine: Antagonist and Agonist
This short video uses the example of adenosine and caffeine to introduce two key concepts in pharmacology: the agonist and the antagonist. Both, adenosine, and caffeine molecules bind to adenosine receptors on the neurons. Caffeine, the antagonist, blocks the receptor, while adenosine, the agonist, produces the biological response upon binding.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 28/09/2026
Structural Biology and Nobel Prizes: Visit PDB-101 to explore connections between Nobel Prizes and more than 50 years of open access to the PDB archive
pdb101.rcsb.org
PDB101: Browse: Nobel Prizes and PDB structures
PDB-101: Training, Outreach, and Education portal of RCSB PDB
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 27/09/2026
New design strategy expands nanoparticle vaccine approach to influenza viruses Scripps Research scientists developed a blueprint for stabilizing key influenza proteins and are using them to make next-generation vaccine candidates
scripps.edu
New design strategy expands nanoparticle vaccine approach to influenza viruses - Scripps Research
Scripps Research scientists developed a blueprint for stabilizing key influenza proteins and are using them to make next-generation vaccine candidates.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 26/09/2026
Targeting antibiotic resistance UD researchers identify molecular switch that could make antibiotics more effective against drug-resistant bacteria
udel.edu
Targeting antibiotic resistance | UDaily
UD researchers identify molecular switch that could make antibiotics more effective against drug-resistant bacteria
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 25/09/2026
September 25th is International #Ataxia Awareness Day PDB structures help us better understand the disease and treament options
asbmb.org
Ataxia: A symptom and a disease
It's International Ataxia Awareness Day.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 24/09/2026
Register for the Oct 22 Virtual Office Hour: Transitioning to the New PDB Beta Archive, Extended PDB IDs, and PDBx/mmCIF Learn how to prepare for the July 21, 2027 transition, including using shortlinks in your code www.rcsb.org/news/fe...
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 23/09/2026
Watch the Webinar: Chemical Search Learn about robust resources offered by RCSB PDB and wwPDB for accessing chemical and structural information about small molecules within PDB structures
pdb101.rcsb.org
PDB101: Searching and Downloading Small Molecules in the PDB
PDB-101: Training, Outreach, and Education portal of RCSB PDB
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 22/09/2026
How X-rays and crystals revealed the true nature of things The story behind the 100-year-old discovery that continues to render Nobel Prizes.
nobelprize.org
How X-rays and crystals revealed the true nature of things - NobelPrize.org
The story behind the 100-year-old discovery that continues to render Nobel Prizes.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 22/09/2026
Poster Prize Awarded at ISMB Congratulations to Gabriel J. Olguín-Orellana (University of Concepción) for PIP2 Binding at the TMIE-TMC1 Interface Reveals a Putative Lipid Regulatory Site in the Hair-Cell MET Channel. pdb101.rcsb.org/news...
Gabriel J. Olguín-Orellana in a dark shirt standing in front of his poster
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 21/09/2026
Amyloid-beta precursor protein (APP) is a complicated protein with many functions. A corrupted form can destroy nerve cells, leading to the loss of thought and memory in Alzheimer's disease. #WorldAlzheimersDay
pdb101.rcsb.org
PDB101: Molecule of the Month: Amyloid-beta Precursor Protein
Cell-clogging amyloids form when proteins improperly aggregate
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Reposted by RCSB Protein Data Bank
BF Francis Ouellette @bffo.bsky.social · 17/09/2026
From the @bioinfoadv.bsky.social journal | Phil Bourne (1953–2026): from small molecules to big data—the journey of a multifaceted visionary | #Bioinformatics #Pioneer @rcsbpdb.bsky.social @iscb.bsky.social #PLOSCBTSR #OpenScience #OpenAccess #DataScience |🧬🖥️🧪🔓❤️ ⬇️ academic.oup.com/bioinformati...
academic.oup.com
Phil Bourne (1953–2026): from small molecules to big data—the journey of a multifaceted visionary
Abstract. Born in London in 1953 and raised in Australia, Phil Bourne spent over four decades in science moving across scales: from crystal structures to t
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 21/09/2026
September 21 is #WorldAlzheimersDay Alzheimer's disease and prion diseases are linked to unnatural aggregation of proteins into amyloid fibrils.
pdb101.rcsb.org
PDB101: Molecule of the Month: Amyloids
Alzheimer's disease and prion diseases are linked to unnatural aggregation of proteins into amyloid fibrils.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 21/09/2026
Map of brain ‘microproteins’ could offer new clues to Alzheimer’s disease Researchers detect more than 1,000 overlooked microproteins in human brain tissue, including some that are altered in Alzheimer’s disease.
nature.com
Map of brain ‘microproteins’ could offer new clues to Alzheimer’s disease
Nature - Researchers detect more than 1,000 overlooked microproteins in human brain tissue, including some that are altered in Alzheimer’s disease.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 19/09/2026
Using high-resolution cryo-electron microscopy, the team revealed how the enzyme recognizes synthetic DNA letters in the same way it recognizes natural ones.
today.ucsd.edu
Breakthrough Helps Expand Genetic Alphabet
Researchers at UC San Diego have demonstrated that one of biology’s most essential enzymes can accurately read and transcribe an expanded genetic alphabet containing eight DNA letters instead of the four used by all known life.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 18/09/2026
September 21 is #NationalOpioidAwarenessDay Watch how opioids activate the G-proteins which in turn interact with other proteins to edit the pain signal.
pdb101.rcsb.org
PDB101: Learn: Videos: Opioids and Pain Signaling
Pain is one of the most trying experiences of life. On the cellular level it is communicated via special neuronal pathways. On the molecular level, however, pain is communicated like any other sensation, via a set of electrical and chemical signals facilitated by complex molecular machinery. These signals can be modulated by opioids, causing us to feel less pain, or no pain at all. Learn how opioids activate the G-proteins which in turn interact with other proteins to edit the pain signal.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 17/09/2026
From wireframes to immersive reality: a historical perspective on molecular visualization software academic.oup.com/bib...
Figure 1

Evolution of molecular graphics tools in structural biology. Timeline illustrating key milestones in the development of molecular visualization and model-building software from the mid-20th century to the present. The first 3D atomic model by Kendrew (1959) marked the beginning of physical molecular modeling. The introduction of FRODO (1978) by Alwyn Jones enabled interactive computer-assisted fitting of atomic coordinates into electron-density maps. The early 1990s saw the emergence of Kinemages (and the KiNG viewer, 1992) and RasMol (1992), pioneering accessible digital visualization of macromolecules. Subsequent tools such as VMD (1995), PyMOL (2000), CCP4 Molecular Graphics (2002), and Coot (2002) expanded functionalities for model refinement and analysis. The later development of Yasara (2014) and ChimeraX (2015) integrated high-performance rendering and interactive analysis, while Nanome (2018), Protein Imager (2020), and MolStar (2021) represent the new generation of v
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 16/09/2026
Poster Prizes Awarded at IUCr2026 Congratulations to Philip Rushton (Purdue University) and Ryu Williston (McGill University). Many thanks to the meeting organizers and the wwPDB Foundation Details: www.rcsb.org/news/fe...
Left: Philip Rushton (Purdue University)
Right: Ryu Williston (McGill University)
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 15/09/2026
Scientists studying cockroach milk, nose-blowing win 2026 Ig Nobel prizes for quirky science www.pbs.org/newshour... Explore in 3D at RCSB PDB: go.rutgers.edu/dfjr1slz
pbs.org
Scientists studying cockroach milk, nose-blowing win 2026 Ig Nobel prizes for quirky science
Ten research teams were honored Thursday at a satirical science awards ceremony that was hosted outside the U.S. for the first time due to travel concerns.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 14/09/2026
Visit PDB-101 for a new Introduction to Metalloproteins in the PDB pdb101.rcsb.org/lear... Register for the Sept 17 Webinar on Remediated Metalloprotein Data and learn how these data have been enhanced www.rcsb.org/news/fe...
pdb101.rcsb.org
PDB101: Learn: Guide to Understanding PDB Data: Exploring Metalloproteins
PDB-101: Training, Outreach, and Education portal of RCSB PDB
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 14/09/2026
"When I'm 55: Celebrating the Founding of the PDB archive on October 20, 1971" "I get by with a little help from my friends: Delivering PDB Structures and Computed Structure Models at RCSB.org" "Data Tripper: Analysis of Trends Across the PDB Archive"
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 13/09/2026
New design strategy expands nanoparticle vaccine approach to influenza viruses Scripps Research scientists develop a blueprint for stabilizing key influenza proteins and using them to make next-generation vaccine candidates.
scripps.edu
New design strategy expands nanoparticle vaccine approach to influenza viruses - Scripps Research
Scripps Research scientists develop a blueprint for stabilizing key influenza proteins and using them to make next-generation vaccine candidates.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 12/09/2026
For nearly a century, scientists have known that phase shifting an electron beam could radically improve electron microscopy. They’ve finally found a reliable way to do it.
physicstoday.aip.org
Ultrabright laser brings details of proteins into focus
For nearly a century, scientists have known that phase shifting an electron beam could radically improve electron microscopy. They’ve finally found a reliable way to do it.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 11/09/2026
A major component of E. coli and Salmonella biofilms are long protein polymers. The dominant protein, curli, are functional amyloids, similar to the pathological filamentous plaques of diseases like Alzheimer's and Parkinson's More on biofilms: pdb101.rcsb.org/motm...
Curli fibers are made of repeating CsgA subunits (yellow) that must translocate through the narrow openings of the CsgG-CsgF channel (shown in pink).
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Reposted by RCSB Protein Data Bank
Janet Iwasa @jiwasa.bsky.social · 09/09/2026
Interested in molecular animation? Give ProteinBlender a try! It's free and open source. animation-lab.github.io/ProteinBlend... The latest tools include a DNA builder (shown in the tutorial video below). We'd love to hear what you think! We have short tutorials that cover all the features!
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Reposted by RCSB Protein Data Bank
Roland Dunbrack 🏳️‍🌈 @rolanddunbrack.bsky.social · 08/09/2026
Congratulations to Prof. John Moult for winning the 2027 ASBMB Warren DeLano Award for Computational Biosciences! Well deserved recognition for his innovative leadership of the CASP structure prediction experiments held since 1994, as well as other similar blind experiments he began or inspired.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 10/09/2026
Ada Yonath obituary: Crystallographer who overcame ‘impossible’ challenge of mapping the ribosome Nobel laureate persisted despite widespread derision and revolutionized structural biology by protecting fragile crystals.
nature.com
Ada Yonath obituary: Crystallographer who overcame ‘impossible’ challenge of mapping the ribosome
Nature - Nobel laureate persisted despite widespread derision and revolutionized structural biology by protecting fragile crystals.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 10/09/2026
Register for the metalloprotein webinar to - Understand the importance of metalloproteins in biology - Gain scientific insights from remediated metalloprotein data - Use coordination geometry and assessment data to identify good structures for research
rcsb.org
Register for the Sept 17 Webinar on Remediated Metalloprotein Data in the PDB
Learn how metalloprotein data have been enhanced to support the Findability, Accessibility, Interoperability, and Reusability of PDB data
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 09/09/2026
Guide to Understanding PDB Data: Beginner’s Guide to PDBx/mmCIF
pdb101.rcsb.org
PDB101: Learn: Guide to Understanding PDB Data: Beginner’s Guide to PDBx/mmCIF
PDBx/mmCIF forms the basis of wwPDB data deposition, annotation, and archiving of PDB structure data. This PDB-101 resource is an introductory guide.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 08/09/2026
Solving Structures, Enabling Discovery: The Impact of the CRSTAL-ID Centers Beyond solving structures, the centers make their expertise, data, and research materials freely available to the broader scientific community More in the summer Education Corner
cdn.rcsb.org
EDUCATION CORNER: Solving Structures, Enabling Discovery: The Impact of the CRSTAL-ID Centers
By Sandhya Subramanian, Karla J. F. Satchell, Alfa Herrera, and Krystle J. McLaughlin
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 07/09/2026
Looking beyond natural sequences A new machine-learning framework aims to improve the success rate of computational protein design while moving away from results that reproduce sequences found in nature.
news.mit.edu
Looking beyond natural sequences | MIT News | Massachusetts Institute of Technology
A machine-learning framework developed by MIT biologists aims to improve the success rate of computational protein design while moving away from results that reproduce sequences found in nature.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 06/09/2026
Flexible DNA transforms protein crystallization New approach reveals proteins’ structures and enables next-gen flexible biomaterials
news.northwestern.edu
Flexible DNA transforms protein crystallization
New approach reveals proteins’ structures and enables next-gen flexible biomaterials
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 05/09/2026
William DeGrado: «If we really understand life, then we really understand proteins» www.uv.es/uvweb/uv-n...
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 04/09/2026
Molecular Landscapes by David S. Goodsell Insulin Release, 2022
pdb101.rcsb.org
PDB101: Goodsell Gallery: Insulin Release
Insulin is stored in small crystals inside pancreatic beta cells.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 03/09/2026
Software Developers: Join our Team at Rutgers RCSB PDB is looking for a software database administrator/database specialist and an IT Infrastructure Lead to support the ongoing operations and growth of our IT infrastructure.
rcsb.org
Software Developers: Join our Team at Rutgers
RCSB PDB is looking for a software database administrator/database specialist and an IT Infrastructure Lead to support the ongoing operations and growth of our IT infrastructure.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 02/09/2026
Register for the Sept 17 Webinar on Remediated Metalloprotein Data in the PDB Learn how metalloprotein data have been enhanced to support Findability, Accessibility, Interoperability, and Reusability of PDB data
rcsb.org
Register for the Sept 17 Webinar on Remediated Metalloprotein Data in the PDB
Learn how metalloprotein data have been enhanced to support the Findability, Accessibility, Interoperability, and Reusability of PDB data
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 01/09/2026
Molecule of the Month: Biofilms Bacterial communities glued together and protected by biological polymers More at PDB-101:
pdb101.rcsb.org
PDB101: Molecule of the Month: Biofilms
Bacterial communities glued together and protected by biological polymers
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 01/09/2026
From 2000: Ribosomal Subunits Atomic structures of the ribosomal subunits reveal a central role for RNA in protein synthesis
pdb101.rcsb.org
PDB101: Molecule of the Month: Ribosomal Subunits
Atomic structures of the ribosomal subunits reveal a central role for RNA in protein synthesis
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Reposted by RCSB Protein Data Bank
ESRF @esrf.fr · 01/09/2026
#InMemory The ESRF joins the global scientific community in mourning the loss of Professor Ada Yonath, one of the most visionary and inspiring scientists of our time, and a long-standing user, advisor and friend of our facility. www.esrf.fr/home/news/ge...
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 31/08/2026
Structural biologists study the mechanisms that underpin damage to and repair of the genome, the way that these genetic changes lead to cancer, and ways for us to use this knowledge to discover and develop new treatments to fight cancer. More at PDB-101:
pdb101.rcsb.org
PDB101: Learn: Exploring the Structural Biology of Cancer
Cells capture and utilize many forms of energy to power their molecular processe
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 30/08/2026
This AI Raygun can shrink and supersize proteins — opening the door to easy editing
nature.com
This AI Raygun can shrink and supersize proteins — opening the door to easy editing
Nature - The model can modify existing proteins using a probability approach.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 29/08/2026
Preclinical findings mark progress toward a long-sought vaccine capable of broad protection against HIV. www.scripps.edu/news...
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 28/08/2026
wwPDB Remediation of Metal-containing PDB Entries and CCDs Improved accuracy and annotation metal-containing PDB Entries and CCDs are now available in remediated PDB data.
rcsb.org
Remediation of Metal-containing PDB Entries and CCDs
Improved accuracy and annotation metal-containing PDB Entries and CCDs are now available in remediated PDB data.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 27/08/2026
Watch the Webinar: Advanced Search Learn what is new in the redesigned Advanced Search feature and how to use it
pdb101.rcsb.org
PDB101: Advanced Search: What Is New and How to Use It
PDB-101: Training, Outreach, and Education portal of RCSB PDB
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 25/08/2026
"AlphaFold had shown that the combination of AI and sufficient data could make groundbreaking discoveries..."
technologyreview.com
AI for science needs reasoning, not just data
AI agents that can model the human process of research will accelerate discoveries in science.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 24/08/2026
Paper Published about the PDB Beta Archive Read about changes that will become the default on July 21, 2027. Transition to this new architecture today.
journals.iucr.org
Protein Data Bank (PDB) Archive: a new architecture (beta) for scalable, PDBx/mmCIF-based data distribution
wwPDB has extended PDB IDs to 12 characters with a prefix `pdb_' followed by eight alphanumeric characters in lower case (for example pdb_1000axyz). A beta version of the PDB Archive (https://files-beta.wwpdb.org), with extended PDB IDs and an improved directory structure, is now available to help communities adopt extended PDB IDs and the PDBx/mmCIF format.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 23/08/2026
New way to intentionally discover molecular glues could expand drug discovery
scripps.edu
New way to intentionally discover molecular glues could expand drug discovery - Scripps Research
Scripps Research scientists and colleagues show how drugs that eliminate certain disease-driving proteins can be discovered systematically rather than by chance.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 22/08/2026
Researchers have developed a groundbreaking technique that can simultaneously map, on a large scale, how thousands of proteins change shape over time.
agencia.fapesp.br
New technique reveals on a large scale how thousands of proteins change shape and move
Led by a Brazilian researcher, a study published in Nature shows that molecules with nearly identical three-dimensional structures can exhibit completely different behaviors over time.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 21/08/2026
Register for the Sept 17 Webinar on Remediated Metalloprotein Data in the PDB Learn how metalloprotein data have been enhanced to support Findability, Accessibility, Interoperability, and Reusability of PDB data
rcsb.org
Register for the Sept 17 Webinar on Remediated Metalloprotein Data in the PDB
Learn how metalloprotein data have been enhanced to support Findability, Accessibility, Interoperability, and Reusability of PDB data
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 20/08/2026
Phytase is used in agriculture to mobilize indigestible phosphate compounds in livestock feed #biotechnology Learn more at PDB-101:
pdb101.rcsb.org
PDB101: Molecule of the Month: Phytase
Phytase is used in agriculture to mobilize indigestible phosphate compounds in livestock feed.
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