Reposted by Joe GroveMartin Pacesa @martinpacesa.bsky.social · 21/09/2026ʙɪɴᴅᴄʀᴀꜰᴛ2 is out, and we're not waiting for the paper. The full code drops today, free for academic and industry use. We're releasing it early so you can start designing right now, and bring its full power to the current Adaptyv competition. github.com/PacesaLab/Bi... 4292142
Reposted by Joe GroveDaniel Hurdiss @danielhurdiss.bsky.social · 16/09/2026Aminopeptidase N is a receptor for hedgehog merbecoviruses | @natmicrobiol.nature.com www.nature.com/articles/s41...nature.comAminopeptidase N is a receptor for hedgehog merbecoviruses - Nature MicrobiologyHedgehog merbecoviruses utilize hedgehog aminopeptidase N, but not the human orthologue, as their entry receptor. Structural resolution of the glycoprotein–receptor interface reveals the molecular int... 095
Reposted by Joe GroveMilot Mirdita @milot.bsky.social · 16/09/2026ColabFold 1.6.3 is out! 2.5x faster, pip-installable, ipSAE+pDockQ2 scores. Thanks Choonghwan Lee, Marielle Russo, Gyuri Kim 🐍pip install colabfold[alphafold] CF2 Sneak Peak with AF3/Boltz/Protenix/ESMFold2… 🐍pip install "colabfold[alphafold3]@git+https://github.com/sokrypton/ColabFold@af3-preview" 29736
Reposted by Joe GroveDr Liam Brierley @liambrierley.bsky.social · 15/09/2026I hypothesised scientists can be funny, so I set up an experiment: take 8 academics and apply stand-up comedy, then run! Find out what your index fingers say about you and why Mondays are purple on Mon 28th Sep! £5 tickets using code BRIGHTCLUB: www.thestand.co.uk/performance/... @glasgow.ac.uk 111
Reposted by Joe GroveSergey Ovchinnikov @sokrypton.org · 14/09/2026Finally a more intuitaive way to learn pLDDT/pAE? 😎 sokrypton.github.io/protein_figh... (Character idea from @hannes-stark.bsky.social & Alex Waldherr) 727698
Reposted by Joe GroveHarmit Singh Malik @harmitmalik.bsky.social · 13/09/2026Re-reading this old article from 2019: Go master quits because AI 'cannot be defeated' www.bbc.com/news/technol... It’s very clear that AI has and will change the playing field (sorry) in many disciplines. If the goal is ‘winning’ this may be an existential crisis for many disciplines.bbc.comGo master quits because AI 'cannot be defeated'Lee Se-dol retires from the game of Go after conceding that computers "cannot be defeated". 2113
Reposted by Joe GroveClaus Wilke @clauswilke.com · 30/08/2026I'm really frustrated by the constant fear-mongering about AI-designed superviruses. Can we focus on the things that should actually worry us, such as measles? blog.genesmindsmachines.com/p/im-sorry-y...blog.genesmindsmachines.comI'm sorry, you're not going to die from an AI-engineered supervirusGod save us from economists who think they can competently talk about biology 412557
Reposted by Joe GroveAntigen Evolution & Design Lab @antigenevo.bsky.social · 14/07/2026First paper with the lab's affiliation!! ✨✨ summarising some of the cool concepts that the Antigen Evolution & Design Lab will be working on! Together with amazing collaborators @mghafari.bsky.social and @grovearmada.bsky.social www.annualreviews.org/content/jour...annualreviews.orgStudying the Deep Evolution of Viruses in the Era of Artificial Intelligence Structure PredictionHigh mutation rates erode viral sequence similarity, obscuring deep evolutionary history. While protein structure is far more conserved than sequence, its use in evolutionary studies has historically ... 1219
Reposted by Joe GroveStephen Royle @steveroyle.bsky.social · 17/06/2026Lab member suggests our new lab motto should be: Take that, evolution! Previous Royle Lab mottos/in-jokes... - Cells don't lie - Papers, Productivity, Hope ✨ - No retreat, no surrender! - We're not impressed until we're “in press”. What's your current lab motto? 🧪 192
Reposted by Joe GroveSergey Ovchinnikov @sokrypton.org · 15/06/2026New Experimental Google Colab Notebook now integrates AlphaFold3 with OpenFold3 and py2Dmol: colab.research.google.com/github/sokry... (1/3) 15515
Reposted by Joe GroveYousuf A. Khan @yousufakhan.bsky.social · 11/06/2026Today my laboratory is thrilled to announce a major breakthrough in the fight against the common cold and other diseases like hand,foot, and mouth disease acute flaccid myelitis caused by picornaviruses. We present the first structure of picornaviral 2C, bound to ssRNA (1/n) 2158
Reposted by Joe GroveReese Richardson @reeserichardson.bsky.social · 05/06/2026The Thermo Fisher situation keeps getting worse. We've now collected 450+ problematic images presented as verification data in TF's antibody catalog. This includes: 🖌️ Dozens more images with duplications or painting 🖨️ Hundreds of blots that all share the same background (behold slideshow below) 18590367
Reposted by Joe GroveMahan Ghafari @mghafari.bsky.social · 21/05/2026Our two-part analysis of the current MV Hondius Andes virus outbreak is now live, including reconstruction of the outbreak molecular clock dating of the closest known ancestors of the outbreak lineage. Part 1: outbreak sequence reconstruction and rooting virological.org/t/molecular-...virological.orgMolecular evolutionary analysis of the current MV Hondius Andes virus outbreakPreliminary reconstruction of the current MV Hondius Andes virus outbreak sequences Note on data use This is an informal analysis of currently available consensus sequences and is not intended as a fo... 12113
Reposted by Joe GroveMart Krupovic @mkrupovic.bsky.social · 11/05/2026With Eugene Koonin, we wrote a rather comprehensive review on the origin, evolution and organization of the #virosphere. We describe all 10 viral realms and the logic behind them, and so much more. Check it out! comptes-rendus.academie-sciences.fr/biologies/ar... 1256130
Reposted by Joe GroveJolly Lab @jollylab.bsky.social · 06/05/2026We are incredibly excited to see our most recent story out @nature.com today:HIV triggers CD4-signaling to remodel nuclear pores and license infection!A heroic effort led by our very own @d-mesner.bsky.social & @mattvxwhelan.bsky.social! @blizardinstitute.bsky.social Link: tinyurl.com/HIVNup 1/11 42011
Reposted by Joe GroveMart Krupovic @mkrupovic.bsky.social · 24/04/2026A new family of rolling-circle replication endonucleases widespread in archaeal viruses and plasmids. This family is unrelated to the HUH superfamily Reps, but distantly related to the bacterial Rep_trans enzymes. @narjournal.bsky.social academic.oup.com/nar/article/... 16125
Reposted by Joe GroveDalan Bailey @dalan-bailey.bsky.social · 23/04/2026Took a long time to get this done, 2-3 years on Figure 1 alone but glad it's finally out!! www.nature.com/articles/s41...nature.comHeart-nosed bat alphacoronaviruses use human CEACAM6 to enter cells - NatureHuman CEACAM6, which is widely expressed in the lung, is identified as a receptor used by the spike proteins of Cardioderma cor (heart-nosed bat) alphacoronaviruses to enter cells. 3216
Reposted by Joe GroveStephen Graham's Lab @atomicvirology.bsky.social · 22/04/2026We did a thing: Scientists find a new way coronaviruses can get into human cells www.cam.ac.uk/research/new...cam.ac.ukScientists find a new way coronaviruses can get into human cellsAn international team of researchers has identified an East African bat coronavirus capable of entering human cells. 03918
Reposted by Joe GroveJoseph Hughes @bljog.bsky.social · 16/04/2026Great delivery by Sarah Little from @grovearmada.bsky.social team @microbiologysociety.org : Scalable Screening of AI Designed Binders that Prevent Virus Entry 053
Reposted by Joe GroveDaniel Hurdiss @danielhurdiss.bsky.social · 11/03/2026Structures of Marburgvirus glycoprotein and its complex with NPC1 receptor doi.org/10.1038/s415...doi.orgStructures of Marburgvirus glycoprotein and its complex with NPC1 receptor - NatureMarburgvirus glycoprotein binds to the endosomal receptor NPC1 in a distinct orientation with higher affinity compared with Ebola virus glycoprotein, accompanied by fusion-relevant rearrangements... 0178
Reposted by Joe GroveEd Hutchinson @socialinfluenza.bsky.social · 25/02/2026I know I am late to the party on this one, but @thrasherxy.bsky.social's The Viral Underclass is *so* good in analysing why the people most excluded from society are also the people in it who are most likely to experience disease. It's incisive, readable, and defiantly hopeful. And also... 33813
Reposted by Joe GroveViroscope @viroscope.bsky.social · 07/03/2026The Trojan Horse is real, and it’s microscopic! 🐴🦠 Our paper is out today in @cellcellpress.bsky.social! We discovered that deltaviruses physically hide INSIDE helper viruses to sneak into new cells. And to prove it, we had to image them from every angle. 🧵👇 www.sciencedirect.com/science/arti...sciencedirect.comDeltaviruses spread through a viral Trojan HorseHepatitis D-like satellite viruses, known as deltaviruses, have been recently discovered in a wide range of animals. These viruses are thought to expr… 47229
Reposted by Joe GroveKarim Majzoub @karimaj.bsky.social · 06/03/2026We found a viral Trojan Horse: a virus can hide inside another virus.This one surprised us: deltaviruses don’t just borrow a helper virus. They can travel inside it. A literal Trojan Horse “virus-in-a-virus” route into cells. 🤯 Kudos to 1st author @viroscope.bsky.social and co-authors !sciencedirect.comDeltaviruses spread through a viral Trojan HorseHepatitis D-like satellite viruses, known as deltaviruses, have been recently discovered in a wide range of animals. These viruses are thought to expr… 820098
Reposted by Joe GroveNature @nature.com · 19/02/2026“It’s a major advance, on the scale of an AlphaFold4. The problem, of course, is that we know nothing of the details.” Isomorphic Lab’s proprietary drug-discovery model is a major advance go.nature.com/3Mm2ZnQgo.nature.com‘An AlphaFold 4’ – scientists marvel at DeepMind drug spin-off’s exclusive new AIIsomorphic Lab’s proprietary drug-discovery model is a major advance, but scientists developing open-source tools are left guessing how to achieve similar results. 04013
Reposted by Joe GrovePhilippe Le Mercier, ViralZone @viralzone.bsky.social · 18/02/2026Exploring ICTV virus metadata just got easier on ViralZone — interactive table, instant CSV export, and full search. The new species names are displayed alongside virus names and acronyms. viralzone.expasy.org/resources/VM... (source: ictv.global/vmr) 052
Reposted by Joe GroveEd Hutchinson @socialinfluenza.bsky.social · 18/02/2026Chikungunya is on the march in Europe www.theguardian.com/science/2026...theguardian.comExcruciating tropical disease can now be transmitted in most of Europe, study finds‘Shocking’ data shows the climate crisis and invasive mosquitos mean chikungunya could spread in 29 countries 042
Joe Grove @grovearmada.bsky.social · 18/02/2026It is almost five years since I first applied AlphaFold to a handful of viral proteins. Today, hundreds of thousands of predictions and many discoveries later, we are delighted to announce the integration of our Viro3D dataset into the @ebi.embl.org and Google DeepMind AlphaFold Database. 23711
Reposted by Joe GroveAmit Meir @amitmhbh.bsky.social · 15/02/2026Very excited to share our work, a fish herpesvirus' cryo EM structure. It features a long PVAT tail, with new and host-like proteins discovered using modelAngelo, Dali, and Viro3D, including a host-like macrodomain doi.org/10.64898/202... @dbhella.bsky.social @grovearmada.bsky.socialdoi.org 1208
Reposted by Joe GrovecryoEM papers @cryoempapers.bsky.social · 14/02/2026Cryo-EM of a Divergent Herpesvirus Reveals Structural Conservation and Novelty Including a Portal-Vertex Tegument Protein with Multiple Macrodomain-like Folds www.biorxiv.org/content/10.64898/2026.02.13.705735v1 #cryoEM 143
Reposted by Joe GroveKresten Lindorff-Larsen @lindorfflarsen.bsky.social · 07/02/2026A near-complete map of human cytosolic degrons and their relevance for disease We measured degron potency of >200,000 30-residue tiles from >5,000 human proteins, and trained a model to predict degrons from sequence Led by @vvouts.bsky.social in @rhp-lab.bsky.social doi.org/10.1126/scia... 05217
Reposted by Joe GroveStuart Neil @tetherin.bsky.social · 02/02/2026This is finally out. Very short take home. All the variation in spike that produced the immune escape characteristics of Omicron can occur in one single persistently infected individual over the period of a year. This is why persistent infections matter www.cell.com/cell-reports...cell.comAntibody escape drives emergence of diverse spike haplotypes resembling variants of concern in persistent SARS-CoV-2 infectionsSnell et al. develop sequencing methodology to identify full-length spike haplotypes and show that persistent SARS-CoV-2 infections drive divergent haplotype emergence, accelerating viral evolution an... 39550
Reposted by Joe GroveMartin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 30/01/2026FoldMason is out now in @science.org. It generates accurate multiple structure alignments for thousands of protein structures in seconds. Great work by Cameron L. M. Gilchrist and @milot.bsky.social. 📄 www.science.org/doi/10.1126/... 🌐 search.foldseek.com/foldmason 💾 github.com/steineggerla...science.orgMultiple protein structure alignment at scale with FoldMasonProtein structure is conserved beyond sequence, making multiple structural alignment (MSTA) essential for analyzing distantly related proteins. Computational prediction methods have vastly extended ou... 4302147
Reposted by Joe GroveAlexis Verger 🧬🧫🧪 @alexis-verger.cpesr.fr · 28/01/2026Let's try this #AcademicSky 1 fav, 1 funny, strange, or unexpected scientific anecdote about a paper, a scientist, a fact, hoping that some will be new to you. 46822
Reposted by Joe GroveProf Jenny Rohn @jennyrohn.bsky.social · 23/01/2026Join the quest - especially historians of London science! 👇So far we have narrowed this down to some lab branded as "Mill Hill" in London E1 postcode in the 1960s (i.e. not actually in Mill Hill) 31012
Reposted by Joe GroveEd Hutchinson @socialinfluenza.bsky.social · 23/01/2026Preparing for some introductory virology lecutures, which is of course a happy excuse for me to do some drawing again 4488
Reposted by Joe GroveMilot Mirdita @milot.bsky.social · 20/01/2026My time in @martinsteinegger.bsky.social's group is ending, but I’m staying in Korea to build a lab at Sungkyunkwan University School of Medicine. If you or someone you know is interested in molecular machine learning and open-source bioinformatics, please reach out. I am hiring! mirdita.orgmirdita.orgMirdita Lab - Laboratory for Computational Biology & Molecular Machine LearningMirdita Lab builds scalable bioinformatics methods. 710756
Reposted by Joe GroveSullivan Lab at OSU @sullivan-lab.bsky.social · 12/01/2026🚨vConTACT3 now in Nature Biotechnology: - >95% agreement with ICTV for known viruses - Classifies both prokaryotic and eukaryotic viruses - Extends beyond genus → subfamily, family & order - Systematically assigns taxonomy to tens of thousands of previously unclassified viruses 12215
Reposted by Joe GroveEd Hutchinson @socialinfluenza.bsky.social · 15/12/2025Really enjoyed day one of the 2025 @influenzaupdate.bsky.social Meeting - looking forward to more flu talks and discussion tomorrow! 1405
Reposted by Joe GroveEd Hutchinson @socialinfluenza.bsky.social · 01/12/2025Feeling festive? Why not deck the halls with @cvrinfo.bsky.social's papercraft #VirusSnowflakes and celebrate the science of viruses and the fight against viral diseases. Download for free: cvr-engagement.co.uk/virus-snowfl... #scicomm #sciart #decorations 48643
Reposted by Joe GroveRobert J. Gifford @robjgifford.bsky.social · 03/12/2025Most viral workflows are fragile pipelines. GLUE turns them into structured, shareable projects: curated sequences, alignments, features, phylogenies, metadata & scripts all in one reproducible environment. gluetools.substack.com/p/glue-a-fle...gluetools.substack.comGLUE: A Flexible Software System for Virus GenomicsA General Solution to the Repeated Problems of Virus Genomics 031
Reposted by Joe GroveSam J Wilson @samjwilsonphd.bsky.social · 27/11/2025How does fever work? Our new Science paper shows how elevated body temperature can protect against severe influenza and that avian-origin viruses escape this defence. This is likely one reason why bird flus and some pandemic influenzas can be so severe.🧵 www.science.org/doi/10.1126/...science.orgAvian-origin influenza A viruses tolerate elevated pyrexic temperatures in mammalsHost body temperature can define a virus’s replicative profile—influenza A viruses (IAVs) adapted to 40° to 42°C in birds are less temperature sensitive in vitro compared with human isolates adapted t... 620089
Reposted by Joe GroveEd Hutchinson @socialinfluenza.bsky.social · 17/11/2025If you'd like to celebrate the biology of viruses - or the fight against viral diseases - this winter, try out our free and updated #VirusSnowflake designs. Please share, and if you have any photos of Virus Snowflakes in your area it would be lovely to see them! cvr-engagement.co.uk/virus-snowfl... 48055
Joe Grove @grovearmada.bsky.social · 06/11/2025🧬 Thrilled to share our latest paper in @natmicrobiol.nature.com 📄 A collaboration to give the Flaviviridae (home to Zika, Dengue & HCV) a much-needed taxonomic re-think. Our at-scale AI structure prediction gave a complementary perspective on viral evolution. www.nature.com/articles/s41...nature.comTaxonomic expansion and reorganization of Flaviviridae - Nature MicrobiologyAnalysis of RNA polymerase hallmark gene phylogenies supported by protein structure relationships of flaviviruses and ‘flavi-like’ viruses underpins the taxonomic expansion and reorganization of Flavi... 12714
Reposted by Joe GroveCharlotte Houldcroft @virologyhouldcroft.bsky.social · 30/10/2025Always fun when the word "unusually" turns up in a UKHSA doc: "influenza activity increased, particularly among children, and is now above baseline. This is an unusually early start of the influenza season." www.gov.uk/government/s...gov.ukNational flu and COVID-19 surveillance report: 30 October 2025 (week 44) 167
Reposted by Joe GroveGfV - Gesellschaft für Virologie @gesvirologie.bsky.social · 01/10/2025🔬 Upcoming Expert Insights Seminar by ACHIEVE Join us on October 7th, 2025, at 2:00 PM (CET) for an inspiring talk on “AlphaFold & HerpesFolds” by Dr. Timothy Soh. Register here to join via Zoom: achieve.g-f-v.org/seminar-seri... 166
Reposted by Joe GroveMicrobiology Society @microbiologysociety.org · 07/10/2025Huge congratulations to Emma Davis, the winner of 2025's Early Career Microbiologist of the Year prize! We agree with Emma that all of the finalists' talks were brilliant and a massive well done to everyone involved! 2318
Reposted by Joe GroveRoni Odai @rodai.bsky.social · 02/10/2025Viral AlphaFold Database (VAD) is live in Science Advances ~27,000 predicted viral protein monomers & homodimers Conserved folds across bacteria, archaea & eukaryotic viruses New toxin–antitoxin system KreTA uncovered Vast “functional darkness” remains uncharted www.science.org/doi/10.1126/...science.orgThe Viral AlphaFold Database of monomers and homodimers reveals conserved protein folds in viruses of bacteria, archaea, and eukaryotesVAD is a Viral AlphaFold Database of protein monomers and homodimers from viruses infecting hosts across the tree of life. 18435
Reposted by Joe GroveErin Doherty @erinedoherty.bsky.social · 02/10/2025Now online at @nature.com we show how the Panoptes defense system protects against viruses that attempt immune evasion - and expands our understanding of the role of oligonucleotides in immunity. Check out this work co-led with @benadler.bsky.social here: www.nature.com/articles/s41...nature.comA miniature CRISPR–Cas10 enzyme confers immunity by inhibitory signalling - NaturePanoptes, an anti-phage defence system against virus-mediated immune suppression, is revealed. 25622
Reposted by Joe GroveTowers Lab @towerslab.bsky.social · 29/09/2025New preprint from our lab, led by our postdocs Dara Annett and Kate Morling in collaboration with Selwood Lab! We developed a modified cyclosporine, BG147, which enhances lentivector gene therapy transduction, ex vivo in HSPC and in vivo in mouse photoreceptors, by degrading IFITM3. Check it out!biorxiv.orgA modified cyclosporine enhances lentivector transduction ex vivo and in vivo by degrading IFITM3Intrinsic innate immune barriers have evolved to suppress viral infection and can reduce effective gene delivery in gene therapy. We have developed BG147, a novel cyclosporine A analogue, optimised vi... 0127