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Joe Grove

@grovearmada.bsky.social
2.9K followers 882 following 96 posts

Investigating viruses, using pipettes, #AI and coffee. Learn more at the lab website: grovelab.github.io Check out our database of viral protein structure predictions: viro3d.cvr.gla.ac.uk Based at: @cvrinfo.bsky.social

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Reposted by Joe Grove
Martin Pacesa @martinpacesa.bsky.social · 21/09/2026
ʙɪɴᴅᴄʀᴀꜰᴛ2 is out, and we're not waiting for the paper. The full code drops today, free for academic and industry use. We're releasing it early so you can start designing right now, and bring its full power to the current Adaptyv competition. github.com/PacesaLab/Bi...
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Reposted by Joe Grove
Daniel Hurdiss @danielhurdiss.bsky.social · 16/09/2026
Aminopeptidase N is a receptor for hedgehog merbecoviruses | @natmicrobiol.nature.com www.nature.com/articles/s41...
nature.com
Aminopeptidase N is a receptor for hedgehog merbecoviruses - Nature Microbiology
Hedgehog merbecoviruses utilize hedgehog aminopeptidase N, but not the human orthologue, as their entry receptor. Structural resolution of the glycoprotein–receptor interface reveals the molecular int...
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Reposted by Joe Grove
Milot Mirdita @milot.bsky.social · 16/09/2026
ColabFold 1.6.3 is out! 2.5x faster, pip-installable, ipSAE+pDockQ2 scores. Thanks Choonghwan Lee, Marielle Russo, Gyuri Kim 🐍pip install colabfold[alphafold] CF2 Sneak Peak with AF3/Boltz/Protenix/ESMFold2… 🐍pip install "colabfold[alphafold3]@git+https://github.com/sokrypton/ColabFold@af3-preview"
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Dr Liam Brierley @liambrierley.bsky.social · 15/09/2026
I hypothesised scientists can be funny, so I set up an experiment: take 8 academics and apply stand-up comedy, then run! Find out what your index fingers say about you and why Mondays are purple on Mon 28th Sep! £5 tickets using code BRIGHTCLUB: www.thestand.co.uk/performance/... @glasgow.ac.uk
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Sergey Ovchinnikov @sokrypton.org · 14/09/2026
Finally a more intuitaive way to learn pLDDT/pAE? 😎 sokrypton.github.io/protein_figh... (Character idea from @hannes-stark.bsky.social & Alex Waldherr)
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Reposted by Joe Grove
Harmit Singh Malik @harmitmalik.bsky.social · 13/09/2026
Re-reading this old article from 2019: Go master quits because AI 'cannot be defeated' www.bbc.com/news/technol... It’s very clear that AI has and will change the playing field (sorry) in many disciplines. If the goal is ‘winning’ this may be an existential crisis for many disciplines.
bbc.com
Go master quits because AI 'cannot be defeated'
Lee Se-dol retires from the game of Go after conceding that computers "cannot be defeated".
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Reposted by Joe Grove
Claus Wilke @clauswilke.com · 30/08/2026
I'm really frustrated by the constant fear-mongering about AI-designed superviruses. Can we focus on the things that should actually worry us, such as measles? blog.genesmindsmachines.com/p/im-sorry-y...
blog.genesmindsmachines.com
I'm sorry, you're not going to die from an AI-engineered supervirus
God save us from economists who think they can competently talk about biology
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Reposted by Joe Grove
Antigen Evolution & Design Lab @antigenevo.bsky.social · 14/07/2026
First paper with the lab's affiliation!! ✨✨ summarising some of the cool concepts that the Antigen Evolution & Design Lab will be working on! Together with amazing collaborators @mghafari.bsky.social and @grovearmada.bsky.social www.annualreviews.org/content/jour...
annualreviews.org
Studying the Deep Evolution of Viruses in the Era of Artificial Intelligence Structure Prediction
High mutation rates erode viral sequence similarity, obscuring deep evolutionary history. While protein structure is far more conserved than sequence, its use in evolutionary studies has historically ...
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Reposted by Joe Grove
Stephen Royle @steveroyle.bsky.social · 17/06/2026
Lab member suggests our new lab motto should be: Take that, evolution! Previous Royle Lab mottos/in-jokes... - Cells don't lie - Papers, Productivity, Hope ✨ - No retreat, no surrender! - We're not impressed until we're “in press”. What's your current lab motto? 🧪
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Reposted by Joe Grove
Sergey Ovchinnikov @sokrypton.org · 15/06/2026
New Experimental Google Colab Notebook now integrates AlphaFold3 with OpenFold3 and py2Dmol: colab.research.google.com/github/sokry... (1/3)
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Reposted by Joe Grove
Yousuf A. Khan @yousufakhan.bsky.social · 11/06/2026
Today my laboratory is thrilled to announce a major breakthrough in the fight against the common cold and other diseases like hand,foot, and mouth disease acute flaccid myelitis caused by picornaviruses. We present the first structure of picornaviral 2C, bound to ssRNA (1/n)
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Reposted by Joe Grove
Reese Richardson @reeserichardson.bsky.social · 05/06/2026
The Thermo Fisher situation keeps getting worse. We've now collected 450+ problematic images presented as verification data in TF's antibody catalog. This includes: 🖌️ Dozens more images with duplications or painting 🖨️ Hundreds of blots that all share the same background (behold slideshow below)
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Reposted by Joe Grove
Mahan Ghafari @mghafari.bsky.social · 21/05/2026
Our two-part analysis of the current MV Hondius Andes virus outbreak is now live, including reconstruction of the outbreak molecular clock dating of the closest known ancestors of the outbreak lineage. Part 1: outbreak sequence reconstruction and rooting virological.org/t/molecular-...
virological.org
Molecular evolutionary analysis of the current MV Hondius Andes virus outbreak
Preliminary reconstruction of the current MV Hondius Andes virus outbreak sequences Note on data use This is an informal analysis of currently available consensus sequences and is not intended as a fo...
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Reposted by Joe Grove
Mart Krupovic @mkrupovic.bsky.social · 11/05/2026
With Eugene Koonin, we wrote a rather comprehensive review on the origin, evolution and organization of the #virosphere. We describe all 10 viral realms and the logic behind them, and so much more. Check it out! comptes-rendus.academie-sciences.fr/biologies/ar...
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Reposted by Joe Grove
Jolly Lab @jollylab.bsky.social · 06/05/2026
We are incredibly excited to see our most recent story out @nature.com today:HIV triggers CD4-signaling to remodel nuclear pores and license infection!A heroic effort led by our very own @d-mesner.bsky.social & @mattvxwhelan.bsky.social! @blizardinstitute.bsky.social Link: tinyurl.com/HIVNup 1/11
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Reposted by Joe Grove
Mart Krupovic @mkrupovic.bsky.social · 24/04/2026
A new family of rolling-circle replication endonucleases widespread in archaeal viruses and plasmids. This family is unrelated to the HUH superfamily Reps, but distantly related to the bacterial Rep_trans enzymes. @narjournal.bsky.social academic.oup.com/nar/article/...
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Reposted by Joe Grove
Dalan Bailey @dalan-bailey.bsky.social · 23/04/2026
Took a long time to get this done, 2-3 years on Figure 1 alone but glad it's finally out!! www.nature.com/articles/s41...
nature.com
Heart-nosed bat alphacoronaviruses use human CEACAM6 to enter cells - Nature
Human CEACAM6, which is widely expressed in the lung, is identified as a receptor used by the spike proteins of Cardioderma cor (heart-nosed bat) alphacoronaviruses to enter cells.
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Reposted by Joe Grove
Stephen Graham's Lab @atomicvirology.bsky.social · 22/04/2026
We did a thing: Scientists find a new way coronaviruses can get into human cells www.cam.ac.uk/research/new...
cam.ac.uk
Scientists find a new way coronaviruses can get into human cells
An international team of researchers has identified an East African bat coronavirus capable of entering human cells.
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Joe Grove @grovearmada.bsky.social · 16/04/2026
Excellent job Sarah. Well done!
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Reposted by Joe Grove
Joseph Hughes @bljog.bsky.social · 16/04/2026
Great delivery by Sarah Little from @grovearmada.bsky.social team @microbiologysociety.org : Scalable Screening of AI Designed Binders that Prevent Virus Entry
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Reposted by Joe Grove
Daniel Hurdiss @danielhurdiss.bsky.social · 11/03/2026
Structures of Marburgvirus glycoprotein and its complex with NPC1 receptor doi.org/10.1038/s415...
doi.org
Structures of Marburgvirus glycoprotein and its complex with NPC1 receptor - Nature
Marburgvirus glycoprotein binds to the endosomal receptor NPC1 in a distinct orientation with higher affinity compared with Ebola virus glycoprotein, accompanied by fusion-relevant rearrangements...
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Reposted by Joe Grove
Ed Hutchinson @socialinfluenza.bsky.social · 25/02/2026
I know I am late to the party on this one, but @thrasherxy.bsky.social's The Viral Underclass is *so* good in analysing why the people most excluded from society are also the people in it who are most likely to experience disease. It's incisive, readable, and defiantly hopeful. And also...
The paperback copy of The Viral Underclass by Steven W. Thrasher, subtitled 'The Human Toll When Inequality and Disease Collide'
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Viroscope @viroscope.bsky.social · 07/03/2026
The Trojan Horse is real, and it’s microscopic! 🐴🦠 Our paper is out today in @cellcellpress.bsky.social! We discovered that deltaviruses physically hide INSIDE helper viruses to sneak into new cells. And to prove it, we had to image them from every angle. 🧵👇 www.sciencedirect.com/science/arti...
sciencedirect.com
Deltaviruses spread through a viral Trojan Horse
Hepatitis D-like satellite viruses, known as deltaviruses, have been recently discovered in a wide range of animals. These viruses are thought to expr…
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Reposted by Joe Grove
Karim Majzoub @karimaj.bsky.social · 06/03/2026
We found a viral Trojan Horse: a virus can hide inside another virus.This one surprised us: deltaviruses don’t just borrow a helper virus. They can travel inside it. A literal Trojan Horse “virus-in-a-virus” route into cells. 🤯 Kudos to 1st author @viroscope.bsky.social and co-authors !
sciencedirect.com
Deltaviruses spread through a viral Trojan Horse
Hepatitis D-like satellite viruses, known as deltaviruses, have been recently discovered in a wide range of animals. These viruses are thought to expr…
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Reposted by Joe Grove
Nature @nature.com · 19/02/2026
“It’s a major advance, on the scale of an AlphaFold4. The problem, of course, is that we know nothing of the details.” Isomorphic Lab’s proprietary drug-discovery model is a major advance go.nature.com/3Mm2ZnQ
go.nature.com
‘An AlphaFold 4’ – scientists marvel at DeepMind drug spin-off’s exclusive new AI
Isomorphic Lab’s proprietary drug-discovery model is a major advance, but scientists developing open-source tools are left guessing how to achieve similar results.
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Reposted by Joe Grove
Philippe Le Mercier, ViralZone @viralzone.bsky.social · 18/02/2026
Exploring ICTV virus metadata just got easier on ViralZone — interactive table, instant CSV export, and full search. The new species names are displayed alongside virus names and acronyms. viralzone.expasy.org/resources/VM... (source: ictv.global/vmr)
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Reposted by Joe Grove
Ed Hutchinson @socialinfluenza.bsky.social · 18/02/2026
Chikungunya is on the march in Europe www.theguardian.com/science/2026...
theguardian.com
Excruciating tropical disease can now be transmitted in most of Europe, study finds
‘Shocking’ data shows the climate crisis and invasive mosquitos mean chikungunya could spread in 29 countries
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Joe Grove @grovearmada.bsky.social · 18/02/2026
It is almost five years since I first applied AlphaFold to a handful of viral proteins. Today, hundreds of thousands of predictions and many discoveries later, we are delighted to announce the integration of our Viro3D dataset into the @ebi.embl.org and Google DeepMind AlphaFold Database.
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Reposted by Joe Grove
Amit Meir @amitmhbh.bsky.social · 15/02/2026
Very excited to share our work, a fish herpesvirus' cryo EM structure. It features a long PVAT tail, with new and host-like proteins discovered using modelAngelo, Dali, and Viro3D, including a host-like macrodomain doi.org/10.64898/202... @dbhella.bsky.social @grovearmada.bsky.social
doi.org
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cryoEM papers @cryoempapers.bsky.social · 14/02/2026
Cryo-EM of a Divergent Herpesvirus Reveals Structural Conservation and Novelty Including a Portal-Vertex Tegument Protein with Multiple Macrodomain-like Folds www.biorxiv.org/content/10.64898/2026.02.13.705735v1 #cryoEM
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Kresten Lindorff-Larsen @lindorfflarsen.bsky.social · 07/02/2026
A near-complete map of human cytosolic degrons and their relevance for disease We measured degron potency of >200,000 30-residue tiles from >5,000 human proteins, and trained a model to predict degrons from sequence Led by @vvouts.bsky.social in @rhp-lab.bsky.social doi.org/10.1126/scia...
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Reposted by Joe Grove
Stuart Neil @tetherin.bsky.social · 02/02/2026
This is finally out. Very short take home. All the variation in spike that produced the immune escape characteristics of Omicron can occur in one single persistently infected individual over the period of a year. This is why persistent infections matter www.cell.com/cell-reports...
cell.com
Antibody escape drives emergence of diverse spike haplotypes resembling variants of concern in persistent SARS-CoV-2 infections
Snell et al. develop sequencing methodology to identify full-length spike haplotypes and show that persistent SARS-CoV-2 infections drive divergent haplotype emergence, accelerating viral evolution an...
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Reposted by Joe Grove
Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 30/01/2026
FoldMason is out now in @science.org. It generates accurate multiple structure alignments for thousands of protein structures in seconds. Great work by Cameron L. M. Gilchrist and @milot.bsky.social. 📄 www.science.org/doi/10.1126/... 🌐 search.foldseek.com/foldmason 💾 github.com/steineggerla...
science.org
Multiple protein structure alignment at scale with FoldMason
Protein structure is conserved beyond sequence, making multiple structural alignment (MSTA) essential for analyzing distantly related proteins. Computational prediction methods have vastly extended ou...
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Reposted by Joe Grove
Alexis Verger 🧬🧫🧪 @alexis-verger.cpesr.fr · 28/01/2026
Let's try this #AcademicSky 1 fav, 1 funny, strange, or unexpected scientific anecdote about a paper, a scientist, a fact, hoping that some will be new to you.
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Prof Jenny Rohn @jennyrohn.bsky.social · 23/01/2026
Join the quest - especially historians of London science! 👇So far we have narrowed this down to some lab branded as "Mill Hill" in London E1 postcode in the 1960s (i.e. not actually in Mill Hill)
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Ed Hutchinson @socialinfluenza.bsky.social · 23/01/2026
Preparing for some introductory virology lecutures, which is of course a happy excuse for me to do some drawing again
A pen and ink drawing showing a sphere (labelled 'What is the simplest symmetrical way to build a box around this genome') and the same sphere enclosed in the 5 Platonic solids
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Milot Mirdita @milot.bsky.social · 20/01/2026
My time in @martinsteinegger.bsky.social's group is ending, but I’m staying in Korea to build a lab at Sungkyunkwan University School of Medicine. If you or someone you know is interested in molecular machine learning and open-source bioinformatics, please reach out. I am hiring! mirdita.org
mirdita.org
Mirdita Lab - Laboratory for Computational Biology & Molecular Machine Learning
Mirdita Lab builds scalable bioinformatics methods.
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Sullivan Lab at OSU @sullivan-lab.bsky.social · 12/01/2026
🚨vConTACT3 now in Nature Biotechnology: - >95% agreement with ICTV for known viruses - Classifies both prokaryotic and eukaryotic viruses - Extends beyond genus → subfamily, family & order - Systematically assigns taxonomy to tens of thousands of previously unclassified viruses
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Ed Hutchinson @socialinfluenza.bsky.social · 15/12/2025
Really enjoyed day one of the 2025 @influenzaupdate.bsky.social Meeting - looking forward to more flu talks and discussion tomorrow!
A poster reading Influenza Update Meeting, with conference delegates behind
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Ed Hutchinson @socialinfluenza.bsky.social · 01/12/2025
Feeling festive? Why not deck the halls with @cvrinfo.bsky.social's papercraft #VirusSnowflakes and celebrate the science of viruses and the fight against viral diseases. Download for free: cvr-engagement.co.uk/virus-snowfl... #scicomm #sciart #decorations
A poster with branding for the MRC-University of Glasgow Centre fo Virus Research, labelled 'Virus Snowflakes.' The poster shows snowflake-like virus designs and song lyrics reading:
On the twelfth day of Christmas, a virus gave to me,
Twelve fights worth winning,
Eleven Christmas dinners,
Ten lunar landers,
Nine childhood vaccines,
Eight tools for teaching,
Seven dogs a-barking,
Six wasps a-laying,
FIIIIVE TIIINY RIIIIIIINGS,
Four vaccine platforms,
Three genome segments,
Two twinned capsids, and
A world that is too small to see
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Robert J. Gifford @robjgifford.bsky.social · 03/12/2025
Most viral workflows are fragile pipelines. GLUE turns them into structured, shareable projects: curated sequences, alignments, features, phylogenies, metadata & scripts all in one reproducible environment. gluetools.substack.com/p/glue-a-fle...
gluetools.substack.com
GLUE: A Flexible Software System for Virus Genomics
A General Solution to the Repeated Problems of Virus Genomics
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Sam J Wilson @samjwilsonphd.bsky.social · 27/11/2025
How does fever work? Our new Science paper shows how elevated body temperature can protect against severe influenza and that avian-origin viruses escape this defence. This is likely one reason why bird flus and some pandemic influenzas can be so severe.🧵 www.science.org/doi/10.1126/...
science.org
Avian-origin influenza A viruses tolerate elevated pyrexic temperatures in mammals
Host body temperature can define a virus’s replicative profile—influenza A viruses (IAVs) adapted to 40° to 42°C in birds are less temperature sensitive in vitro compared with human isolates adapted t...
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Ed Hutchinson @socialinfluenza.bsky.social · 17/11/2025
If you'd like to celebrate the biology of viruses - or the fight against viral diseases - this winter, try out our free and updated #VirusSnowflake designs. Please share, and if you have any photos of Virus Snowflakes in your area it would be lovely to see them! cvr-engagement.co.uk/virus-snowfl...
A flurry of snowflakes with text reading 'Virus Snowflakes: a collection of paper art viruses by Ed Hutchinson - Download now!' along with the logo of the MRC-University of Glasgow Centre for Virus Research
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Joe Grove @grovearmada.bsky.social · 06/11/2025
🧬 Thrilled to share our latest paper in @natmicrobiol.nature.com 📄 A collaboration to give the Flaviviridae (home to Zika, Dengue & HCV) a much-needed taxonomic re-think. Our at-scale AI structure prediction gave a complementary perspective on viral evolution. www.nature.com/articles/s41...
nature.com
Taxonomic expansion and reorganization of Flaviviridae - Nature Microbiology
Analysis of RNA polymerase hallmark gene phylogenies supported by protein structure relationships of flaviviruses and ‘flavi-like’ viruses underpins the taxonomic expansion and reorganization of Flavi...
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Charlotte Houldcroft @virologyhouldcroft.bsky.social · 30/10/2025
Always fun when the word "unusually" turns up in a UKHSA doc: "influenza activity increased, particularly among children, and is now above baseline. This is an unusually early start of the influenza season." www.gov.uk/government/s...
gov.uk
National flu and COVID-19 surveillance report: 30 October 2025 (week 44)
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GfV - Gesellschaft für Virologie @gesvirologie.bsky.social · 01/10/2025
🔬 Upcoming Expert Insights Seminar by ACHIEVE Join us on October 7th, 2025, at 2:00 PM (CET) for an inspiring talk on “AlphaFold & HerpesFolds” by Dr. Timothy Soh. Register here to join via Zoom: achieve.g-f-v.org/seminar-seri...
Announcement of the “Expert insights” online seminar series by the ACHIEVE Academy. Talk by Dr. Timothy Soh from the Leibniz Institute of Virology on “AlphaFold & HerpesFolds.” Date: Tuesday, October 7, 2025, at 2:00 PM. The series takes place every first Tuesday of the month.
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Microbiology Society @microbiologysociety.org · 07/10/2025
Huge congratulations to Emma Davis, the winner of 2025's Early Career Microbiologist of the Year prize! We agree with Emma that all of the finalists' talks were brilliant and a massive well done to everyone involved!
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Roni Odai @rodai.bsky.social · 02/10/2025
Viral AlphaFold Database (VAD) is live in Science Advances ~27,000 predicted viral protein monomers & homodimers Conserved folds across bacteria, archaea & eukaryotic viruses New toxin–antitoxin system KreTA uncovered Vast “functional darkness” remains uncharted www.science.org/doi/10.1126/...
science.org
The Viral AlphaFold Database of monomers and homodimers reveals conserved protein folds in viruses of bacteria, archaea, and eukaryotes
VAD is a Viral AlphaFold Database of protein monomers and homodimers from viruses infecting hosts across the tree of life.
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Erin Doherty @erinedoherty.bsky.social · 02/10/2025
Now online at @nature.com we show how the Panoptes defense system protects against viruses that attempt immune evasion - and expands our understanding of the role of oligonucleotides in immunity. Check out this work co-led with @benadler.bsky.social here: www.nature.com/articles/s41...
nature.com
A miniature CRISPR–Cas10 enzyme confers immunity by inhibitory signalling - Nature
Panoptes, an anti-phage defence system against virus-mediated immune suppression, is revealed.
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Towers Lab @towerslab.bsky.social · 29/09/2025
New preprint from our lab, led by our postdocs Dara Annett and Kate Morling in collaboration with Selwood Lab! We developed a modified cyclosporine, BG147, which enhances lentivector gene therapy transduction, ex vivo in HSPC and in vivo in mouse photoreceptors, by degrading IFITM3. Check it out!
biorxiv.org
A modified cyclosporine enhances lentivector transduction ex vivo and in vivo by degrading IFITM3
Intrinsic innate immune barriers have evolved to suppress viral infection and can reduce effective gene delivery in gene therapy. We have developed BG147, a novel cyclosporine A analogue, optimised vi...
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