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Salah Elias

@theeliaslab.bsky.social
1.6K followers 1K following 41 posts

🇩🇿 🇫🇷 cell & developmental biologist associate professor at @unisouthampton.bsky.social stem cells, cell division, cell polarity, centrosomes, mammary organogenesis, breast cancer and microscopy

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Reposted by Salah Elias
Biological Sciences @sotonbiosciences.bsky.social · 24/09/2026
Dr Tomislav Cernava is part of IMPULSA, a new £2.5m ARIA-funded project exploring how plant immunity and the microbiome can help produce more disease-resistant oak trees in increasingly challenging environmental conditions. www.southampton.ac.uk/research/gro...
Acorns on an oak tree
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Biological Sciences @sotonbiosciences.bsky.social · 14/09/2026
AI is transforming understanding of hidden diseases, helping detect illnesses such as cancer. Join researchers & artists at our hands-on #BSF26 event to explore the invisible inner workings of our bodies. 📍19 Sept, 11am-5pm, Sir James Matthews Building. britishsciencefestival.org/event/invisi...
britishsciencefestival.org
Invisible illness through AI eyes | British Science Festival
This drop in event runs from 11.00 – 17.00 AI has the potential to transform our understanding of hidden diseases. Doctors use specialist medical imaging to uncover what’s beneath the skin – think X…
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Reposted by Salah Elias
Biological Sciences @sotonbiosciences.bsky.social · 26/08/2026
We're offering three full tuition fee scholarships for UK students from racially minoritised ethnic backgrounds studying eligible MSc or MRes courses across Environmental and Life Sciences. Find out more and apply by 14 September 2026: www.southampton.ac.uk/study/fees-f...
Three students in the library
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Reposted by Salah Elias
University of Southampton @unisouthampton.bsky.social · 18/08/2026
Our researchers have developed a powerful AI tool that reveals previously invisible patterns inside breast cancers. It could help identify high-risk patients, predict how breast cancer progresses, and lead to more targeted treatments. Read more 👉 tr.pulse.ly/swvsgqec4c
Microscopic view of a tissue microarray core stained with immunohistochemistry against a white background. The circular tissue section shows a dense sheet of small, round cells stained light blue. Within the tissue core, thin, elongated blood vessels are highlighted with dark brown staining. Very sparse, tiny, dot-like reddish-brown signals are visible within the cytoplasm of some cells.A circular fluorescence microscopy tissue section on a black background, displaying a dense cellular structure stained in vibrant magenta, bright yellow, white, and sparse cyan. A prominent oval glandular duct-like structure stands out near the lower center, outlined in magenta with a yellow and white interior. Magenta-stained cells form dense, swirling clusters throughout the tissue, interspersed with scattered yellow and white-labeled cells.
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Sophien Kamoun @kamounlab.bsky.social · 27/07/2026
Preprint Review @TheSainsburyLab FTW I said it and I say it again: high-profile papers that don't get preprinted are suspicious. BAD ACTORS DON’T PREPRINT. www.tsl.ac.uk/science-comm...
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Reposted by Salah Elias
Salah Elias @theeliaslab.bsky.social · 17/07/2026
I am delighted to share the final version of our latest study, led by the extraordinary PhD student Jiaoqi Cheng. We developed CenSegNet, a generalist AI framework for large-scale mapping of centrosome phenotypes at both spatial and single-cell resolution. (1/6) www.nature.com/articles/s41...
nature.com
CenSegNet: a generalist high-throughput deep learning framework for centrosome phenotyping at spatial and single-cell resolution in heterogeneous tissues - Nature Communications
Cheng, Fan, and colleagues develop CenSegNet, a generalist AI framework for large-scale mapping of centrosome phenotypes, uncovering distinct patterns associated with breast tumour heterogeneity, dise...
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Reposted by Salah Elias
Biological Sciences @sotonbiosciences.bsky.social · 20/07/2026
On 19th Sept @britsciassoc.bsky.social festival join @theeliaslab.bsky.social @clarkinbonebiol.bsky.social @owenrackham.bsky.social & other researchers🔬, artists🎨poets schools 🎓 to explore how AI & 3D imaging are uncovering hidden diseases in our bones 🦴 and detecting cancer earlier 👇#bsf2026
britishsciencefestival.org
Invisible illness through AI eyes | British Science Festival
This drop in event runs from 11.00 – 17.00 AI has the potential to transform our understanding of hidden diseases. Doctors use specialist medical imaging to uncover what’s beneath the skin – think X…
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Salah Elias @theeliaslab.bsky.social · 17/07/2026
I am delighted to share the final version of our latest study, led by the extraordinary PhD student Jiaoqi Cheng. We developed CenSegNet, a generalist AI framework for large-scale mapping of centrosome phenotypes at both spatial and single-cell resolution. (1/6) www.nature.com/articles/s41...
nature.com
CenSegNet: a generalist high-throughput deep learning framework for centrosome phenotyping at spatial and single-cell resolution in heterogeneous tissues - Nature Communications
Cheng, Fan, and colleagues develop CenSegNet, a generalist AI framework for large-scale mapping of centrosome phenotypes, uncovering distinct patterns associated with breast tumour heterogeneity, dise...
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Salah Elias @theeliaslab.bsky.social · 15/04/2026
Proud of Jiaoqi Cheng who has successfully passed her PhD viva 🎉 🎓Many thanks to her examiners, Susana Godinho @susanagodinho.bsky.social and Charlie Birts @sotonbiosciences.bsky.social #theeliaslab
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canaztekin.bsky.social @canaztekin.bsky.social · 10/04/2026
🚨 Why can’t mammals regenerate limbs like frog tadpoles or salamanders? In our new paper in @science.org , we show that species-specific oxygen sensing acts as a gatekeeper for initiating limb regeneration 🐭🐸 🔗 www.science.org/doi/10.1126/... #EvoDevo
science.org
Species-specific oxygen sensing governs the initiation of vertebrate limb regeneration
Why mammals cannot regenerate limbs like amphibians do presents a long-standing puzzle in biology. To uncover the underlying differences, we compared amputation responses of embryonic mouse (Mus musculus) and Xenopus laevis tadpole limbs. Lowering ...
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Omaya Dudin 𓂆 ¦🍉¦🦠¦🔬¦ @dudinlab.bsky.social · 17/02/2026
A 🆕 #Ichthyosporea story Led by@margaridaaraujo.bsky.social, in Co. @gautamdey.bsky.social & @hiralshah.bsky.social+🔥team across @embl.org & @sciencesunige.bsky.social We finally have a look at what #microtubules are doing during #cellularization in #Sphaeroforma ▶️ tinyurl.com/MTSARC #ProtistsOnSky
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Michael Way @drmichaelway.bsky.social · 06/02/2026
2nd postdoc job alert in the Crick Institute in London. Project will examine the role of motors & the cytoskeleton (actin, septins and microtubules) during vaccinia virus egress using biochemical, structural & cellular approaches + live cell imaging. spread the word. crick.ac.uk/WayPostdoc20...
crick.ac.uk
Postdoctoral Fellow - Cellular signalling and cytoskeletal function lab
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The Company of Biologists @biologists.bsky.social · 29/01/2026
Throughout the year, our community has been sharing stories with us about how The Company of Biologists has supported you over time. Your stories were heartfelt, and we feel grateful and humbled that we have been able to be part of your journeys. bit.ly/4q7C0Ki
Message in a bottle

Stories on how The Company of Biologists supports the biological community
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Shaheen Sikandar @ssikandar.bsky.social · 23/01/2026
Excited to share our latest work exploring the link between aging, pregnancy, and breast cancer risk. 🧬 nature.com/articles/s41...
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GetGenome @getgenome.bsky.social · 07/01/2026
Last newsletter of 2025 highlighting a few of GetGenome’s recent activities.
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GetGenome @getgenome.bsky.social · 18/12/2025
I just published: GetGenome in 2025: onward and upward 2025 was a big year for @GetGenome. We doubled down on our mission to democratize genomics, connect early-career researchers, and amplify microbial voices from every corner of the planet. medium.com/p/getgenome-...
medium.com
GetGenome in 2025: onward and upward
2025 was a big year for GetGenome. We doubled down on our mission to democratize genomics, connect early-career researchers, and amplify…
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Reposted by Salah Elias
Omaya Dudin 𓂆 ¦🍉¦🦠¦🔬¦ @dudinlab.bsky.social · 17/12/2025
Humbled and honoured to join this club, alongside some of my scientific heroes and colleagues. Grateful to my team, collaborators, and mentors &, just as much, to my wife, family and friends.
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Life Sciences Switzerland (LS2) @lifesciswitzerland.bsky.social · 17/12/2025
Congratulations to Prof. Omaya Dudin for receiving the Friedrich Miescher Award 2026! Find out more: www.ls2.ch/awards/fried... Prof. Dudin will present his award lecture at the LS2 Annual Meeting 2026 in Zurich: annual-meeting.ls2.ch/2026 @dudinlab.bsky.social @fmiscience.bsky.social
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Omaya Dudin 𓂆 ¦🍉¦🦠¦🔬¦ @dudinlab.bsky.social · 19/11/2025
Quite a busy day on #Bluesky ! Been a while since we have been #preLight -ed ! Discover HAK-Actin if you haven't already ;)
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Omaya Dudin 𓂆 ¦🍉¦🦠¦🔬¦ @dudinlab.bsky.social · 31/10/2025
🚨Our collaboration with @centriolelab.bsky.social & @gautamdey.bsky.social is out today in @cp-cell.bsky.social We show that #Expansion #Microscopy is a broad-spectrum modality for Euks, enabling 3D phenotypic maps rooted to phylogeny. #ProtistsOnSky #SciComm #SciSky www.cell.com/cell/fulltex...
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Seema Grewal @seemagrewal.bsky.social · 07/10/2025
So sad to hear the news - John truly was an inspiration to so many, and one of a kind. www.cam.ac.uk/research/new...
cam.ac.uk
Nobel Laureate Professor Sir John Gurdon dies aged 92
It is with great sadness that the University shares the news of the death of Professor Sir John Gurdon, founder of the Gurdon Institute.
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Camila dos Santos @caoresco.bsky.social · 26/09/2025
Are you looking for a reliable strategy to quantify the architecture of mammary tissue using whole mount images?? Well, maybe you should check MaGNet, our new computational based and user friendly approach (and you probably can adapt it to other organs as well). link.springer.com/article/10.1...
link.springer.com
MaGNet: A Network-Based Method for Quantitative Analysis of the Mammary Ductal Tree in Developing Female Mice - Journal of Mammary Gland Biology and Neoplasia
The mammary gland is a uniquely dynamic organ with a branching architecture that develops entirely after birth in response to hormonal cues. A common approach in mammary gland biology is the evaluation of branching morphogenesis to characterize the role of developmental, physiological and molecular perturbations on branching tissue invasion, growth, and maintenance. Yet, the field still lacks a fully open-sourced, quantitative framework to analyze whole-mount mammary tissue images, as a commonly utilized methodology. Here, we present MaGNet (Mammary Gland Network analysis tool), a method that leverages network theory to characterize key features of ductal branching during mammary gland development. Applying this pipeline to mammary gland images captured at three pubertal timepoints, we achieved reproducible quantification of ductal tree expansion across development. In addition, this network analysis pipeline captures ductal expansion induced by pregnancy hormones. By providing open-source tools to the research community, this method may increase reproducibility and broad applicability across diverse organ systems, model organisms, and developmental stages.
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Salah Elias @theeliaslab.bsky.social · 15/09/2025
Excited to share our new preprint introducing CenSegNet, a deep learning framework for high-throughput, spatially resolved and single-cell centrosome profiling in heterogeneous tissues. A huge effort co-led by brilliant PhD students, Jiaoqi Cheng & Keqiang Fan. 1/3 www.biorxiv.org/content/10.1...
biorxiv.org
CenSegNet: a generalist high-throughput deep learning framework for centrosome phenotyping at spatial and single-cell resolution in heterogeneous tissues
Centrosome amplification (CA) is a hallmark of epithelial cancers, yet its spatial complexity and phenotypic heterogeneity remain poorly resolved due to limitations in conventional image analysis. We ...
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Salah Elias @theeliaslab.bsky.social · 15/09/2025
Excited to share our new preprint introducing CenSegNet, a deep learning framework for high-throughput, spatially resolved and single-cell centrosome profiling in heterogeneous tissues. A huge effort co-led by brilliant PhD students, Jiaoqi Cheng & Keqiang Fan. 1/3 www.biorxiv.org/content/10.1...
biorxiv.org
CenSegNet: a generalist high-throughput deep learning framework for centrosome phenotyping at spatial and single-cell resolution in heterogeneous tissues
Centrosome amplification (CA) is a hallmark of epithelial cancers, yet its spatial complexity and phenotypic heterogeneity remain poorly resolved due to limitations in conventional image analysis. We ...
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Reposted by Salah Elias
Kate Miroshnikova @katemiro.bsky.social · 15/08/2025
Pathologists have used nuclear & tissue shapes to diagnose #cancer for decades, but what is the molecular basis for this? In our latest work, we develop a computational pipeline to figure this out in #colorectalcancer! Check out 🧵& preprint #mechanobiology #stemcells www.biorxiv.org/content/10.1...
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PLOS Biology @plosbiology.org · 01/08/2025
The #PrimaryCilium dynamically assembles & disassembles, but how is this controlled? @cytolabkoc.bsky.social shows that #ciliopathy linked protein Ccdc66 regulates both #cilium stability & length in epithelial cells via microtubules, actin & vesicular trafficking @plosbiology.org 🧪 plos.io/4mdTS4A
Model for cellular functions and mechanisms of CCDC66. CCDC66 is a microtubule-stabilizing protein that maintains cilium integrity and size and facilitates vesicular transport at the ciliary base. Depletion of CCDC66 results in variations in cilia size due to compromised axonemal integrity, intraflagellar transport, and increased ectocytosis events involving the release of vesicles and fragments. CCDC66 may also support ciliary ectocytosis and length stability by regulating the actin cytoskeleton. Furthermore, disruptions in both microtubule stability and the actin cytoskeleton impair RAB11 and RAB5-mediated endocytosis and membrane recycling, affecting cell adhesion and the targeting of ciliary receptors. This disruption subsequently activates protein degradation pathways through RAB7-regulated late endocytosis, potentially involving RAB7 translocation to cilia to support ectocytosis. Collectively, these defects in protein transport, cilia function, and cell contacts contribute to compromised epithelial tissue integrity and multilumen formation in kidney tubules.
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Franklin Nobrega @fnobrega.bsky.social · 28/07/2025
Thrilled to see our Kiwa story out today! A membrane-associated supercomplex that senses infection and blocks replication and transcription. www.cell.com/cell/fulltex... Huge congratulations to Yi and Zhiying for bringing it home, to Thomas for starting us off, and to all the collaborators.
cell.com
Kiwa is a membrane-embedded defense supercomplex activated at phage attachment sites
Zhang, Todeschini, and Wu et al. show that the bacterial defense system Kiwa senses phage attachment at the membrane and assembles a transmembrane complex that halts infection by blocking phage DNA re...
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Salah Elias @theeliaslab.bsky.social · 25/07/2025
A short break from paper writing, with family
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Vicki Metzis @vmetzis.bsky.social · 14/07/2025
Interested in developmental epigenetics? So are we! Apply now to join us for your postdoc! Multiple positions across multiple groups @mrc-lms.bsky.social Projects spanning germline demethylation, gene regulation, genome architecture in development & disease 👇👇 lms.mrc.ac.uk/work/vacanci...
lms.mrc.ac.uk
MRC Postdoctoral Research Scientists x 5 - MRC Laboratory of Medical Sciences
Applications are now open for up to five postdoctoral positions in the area of developmental epigenetics.
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KatajistoLab @katajistolab.bsky.social · 14/07/2025
Proudly presenting Simon’s @simonsterson.bsky.social‬ paper on asymmetric apportioning of old mitochondria biasing intestinal stem cells for the Paneth cell linage through aKG-dependent metabolism @naturemetabolism.bsky.social www.nature.com/articles/s42... @helsinki.fi @metastem.bsky.social 🧵1/8
nature.com
Old mitochondria regulate niche renewal via α-ketoglutarate metabolism in stem cells - Nature Metabolism
Andersson et al. show that intestinal stem cells enriched for old mitochondria are metabolically distinct and have enhanced ability to regenerate the epithelial niche.
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Sophien Kamoun @kamounlab.bsky.social · 11/07/2025
I just published: Why I’m skipping the Congress this year (And why you should still publish your posters) Publishing your poster creates a citable record and protects you from bad actors. #ISMPMI2025 #OpenMPMI #AcademicChatter #PhDchat medium.com/p/why-im-ski...
medium.com
Why I’m skipping the Congress this year (And why you should still publish your posters)
Publishing your poster creates a verifiable and citable record of your work. It also protects you from bad actors — the evidence will be…
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Richard Sever @richardsever.bsky.social · 12/07/2025
“Want to know which papers are flawed…the ones that don’t get preprinted” Not the first time I’ve heard people say this.
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Tolga Bozkurt @tolgaboz.bsky.social · 07/07/2025
Plz RT. We are looking for a postdoc to join our collborative project on AI-guided bioengineering of plant immune receptors @tolgaboz.bsky.social and @jiorgoskourelis.bsky.social labs: www.jobs.ac.uk/job/DNV032/r...
jobs.ac.uk
Research Associate in Programmable Plant Immunity at Imperial College London
Apply for the Research Associate in Programmable Plant Immunity role on jobs.ac.uk, the top job board for academic positions in higher education. View details and apply now.
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Rashmi Priya @rashmi-priya.bsky.social · 07/07/2025
This was a fun exercise... reflecting on my accidental path into science, the questions that drive our lab @crick.ac.uk , and thoughts on building a more inclusive scientific community. Grateful for the opportunity @focalplane.bsky.social and Subhajit .
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Robin Journot 🔬| 🎾 @robinjournot.bsky.social · 01/07/2025
🧵Just out ! We reveal how 4 branched epithelia—mammary, lacrimal, salivary & prostate—use a conserved YAP–Notch–p63 circuit to self-organize during development & regeneration. Here’s the story👇 authors.elsevier.com/c/1lM285Sx5g... Work done in @frelab.bsky.social at ‪ ‪ @institutcurie.bsky.social
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Sophien Kamoun @kamounlab.bsky.social · 25/06/2025
I just published: Mountains can meet: farming the desert with microbes, not fertilizers In the harsh deserts of Southern Algeria, Nadjette Djemouai is uncovering the power of native microbes to support sustainable agriculture. @getgenome.bsky.social 🇩🇿 kamounlab.medium.com/mountains-ca...
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GetGenome @getgenome.bsky.social · 25/06/2025
June 2025 newsletter getgenome.net/network
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Sophien Kamoun @kamounlab.bsky.social · 21/06/2025
الباحث في التكنولوجيا الحيوية بجامعة ساوثهامبتون البروفيسور صالح إلياس للنصر: أفكر كل يوم في العودة إلى وطني وأعتبر نفسي ثمرة الجامعة الجزائرية www.annasronline.com/%D8%B1%D9%88...
annasronline.com
الباحث في التكنولوجيا الحيوية بجامعة ساوثهامبتون البروفيسور صالح إلياس للنصر: أفكر كل يوم في العودة إلى وطني وأعتبر نفسي ثمرة الجامعة الجزائرية
يكشف الباحث الجزائري في مجالات التكنولوجيات الحيوية بجامعة ساوثهامبتون بالمملكة المتحدة، البروفيسور صالح إلياس، في هذا الحوار مع النصر، عن رغبته في العودة إلى الوطن من أجل نقل الخبرات التي اكتسبها في ...
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GetGenome @getgenome.bsky.social · 18/06/2025
Thank you Fatma @Sakhri23 for your expert organisation and for being such a graceful host 🙏
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Sophien Kamoun @kamounlab.bsky.social · 18/06/2025
I’m in Constantine 🇩🇿 thanks to a connection made years ago on Twitter, when I met Salah Elias @theeliaslab @theeliaslab.bsky.social We quickly discovered a shared passion for science—and a strong sense of community. @science_CSB @GetGenome
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The Company of Biologists @biologists.bsky.social · 10/06/2025
We are highlighting Liz Robertson, @dev-journal.bsky.social Editor and the longest-standing Editor of @biologists.bsky.social journals, as an extraordinary biologist this week. #100biologists
The Company of Biologists 100 logo to the left and QR code to the right.
 
Portrait of Liz Robertson to the left, text to the right
 
100 extraordinary biologists

Liz Robertson

Having been a Development Editor since 2003, Liz Robertson is the longest-standing Editor of The Company of Biologists’ journals still in service. She has also been a prolific Development author since 1983. Liz’s lab at the University of Oxford, UK, studies signalling and gene expression in early mammalian development. 

#100biologists #biologists100
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Omaya Dudin 𓂆 ¦🍉¦🦠¦🔬¦ @dudinlab.bsky.social · 10/06/2025
90% of you probably don’t need to read this. But maybe some of you are curious & 10% will feel seen. Or a little less alone. This isn’t about seeking sympathy. It’s about sharing something hard to say out loud; partly to heal, partly in case someone needs to hear it too. (1/3) tinyurl.com/DudinO
cell.com
Omaya Dudin
Interview with Omaya Dudin, who uses Ichthyosporea as models to study how and why unicellular organisms evolved multicellularity at the University of Geneva.
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Salah Elias @theeliaslab.bsky.social · 25/05/2025
This is my land 🇩🇿
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Yaser Atlasi @yatlasi.bsky.social · 31/03/2025
We have a postdoc position in my group in collaboration with EMBL Rome; join us to make important discoveries in this exciting project. Please apply or share. hrwebapp.qub.ac.uk/tlive_webrec...
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Salah Elias @theeliaslab.bsky.social · 28/03/2025
Bigfoot is here 🎉
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Fatima Pereira @fatimacpereira.bsky.social · 27/03/2025
📣 Exciting opportunity! We're hiring a #postdoctoral fellow in #gutmicrobiome research to explore the activity and function of the gut microbiome in situ and its regulation by the immune system.🦠🔬 Post based at @sotonbiosciences.bsky.social Apply here 👇 jobs.soton.ac.uk/Vacancy.aspx...
jobs.soton.ac.uk
Job Opportunity at the University of Southampton: Research Fellow (Postdoctoral) in Microbiology/Microbiome
Applications are invited for a Postdoctoral Research Fellow position in the Gut Microbiome Group, School of Biological Sciences at the University of Southampton. The University of Southampton is a wor...
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Antonio Scialdone @antonio-scialdone.bsky.social · 27/03/2025
Here’s our latest study on human gastruloids: www.science.org/doi/10.1126/... With the Surani lab, we combine imaging, scRNA-seq and genetic perturbation to investigate the emergence of amnion-&PGC-like cells. Congrats to Jitesh Neupane, Gabriele Lubatti and all co-authors for their great work!
science.org
The emergence of human primordial germ cell–like cells in stem cell–derived gastruloids
3D human gastruloids mimic gastrulation and postgastrulation development, forming the three germ layer derivatives and hPGCLCs.
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Mill_lab @cilialab.bsky.social · 26/03/2025
Great pitch for why to submit, review & write for @jcellsci.bsky.social by @drmichaelway.bsky.social - for the cell biology community, by the cell biology community💪! And great to see on screen the ECR best paper award launched in the late and much missed David Stephens’ name! #WeNeedMoreDavids
Micheal Way Editor of Journal of Cell Science launching the ECR award for best paper named for the late and much missed David Stephens.
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Kif Liakath-Ali @kifla.bsky.social · 21/03/2025
Deeply honoured to be selected as a member of the prestigious UK Young Academy and join these trailblazing minds in creating positive change. Looking forward to collaborating with fellow academics and researchers as we tackle pressing challenges in science and society. @unisouthampton.bsky.social
ukyoungacademy.org
UK Young Academy appoints 42 new emerging leaders  | UK Young Academy
Introducing our newest members to the nationwide network of early career researchers and professionals, selected through the 2024 call for applications
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