Reposted by Soham BasuEMBL @embl.org · 21/09/2026There is still time to apply for the EMBL International PhD Programme! 📢 Don’t miss this opportunity to receive dedicated mentoring while doing interdisciplinary research. Research groups across EMBL are recruiting now! bit.ly/4x9Edss 01432
Reposted by Soham BasuYanlan Mao @yanlanmao.bsky.social · 30/07/2026This epic paper, which has been a heroic 10 year journey for the lead author, Ricardo Barrientos, is finally out in Cell today! Many thanks to all co-authors, especially Billie Meadowcroft and Andela Saric for their beautiful MD simulations www.cell.com/cell/fulltex...cell.comBasement membrane turnover controls cell shapeBasement membranes are scaffolds of proteins, like collagen, that give organs shape. During development, basement membranes must adapt to the growing organ. We infer how fast the basement membrane ada... 112654
Reposted by Soham BasuScience Magazine @science.org · 24/07/2026A new analysis in Science of more than 116,000 bird songs has revealed that the astonishing variety of passerine birdsong is built from just eight basic acoustic motifs, like trills, whistles, and harmonic notes. scim.ag/4ft2KBFscim.agThe global biogeography of passerine songsAlthough bird songs are classic models for understanding the evolution of vocal communication, their global diversity has long made the development of a unifying framework challenging. By analyzing th... 09227
Reposted by Soham BasuHanh Vu @hanhtkvu.bsky.social · 01/07/2026Super excited that the first preprint from the lab is out! Led by an amazing student, Gaurav @gvaidya.bsky.social, jointly supervised with @mwdorr.bsky.social. 44711
Reposted by Soham BasuJoshua Sokol @joshuasokol.bsky.social · 04/06/2026What is the value of human beings studying the cosmos? For @michaelgreshko.bsky.social at Science, I dug into how practitioners of humanity's oldest exact science are metabolizing the latest developments in AI...and how it seems to be forcing them to wrestle with philosophical questions.science.orgAmid a flood of AI advances, astrophysicists are questioning the soul of their fieldResearchers see enormous power in new tools—but also the potential end of astrophysics as a human endeavor 23115
Reposted by Soham BasuLaura Rustarazo-Calvo @laura-rustarazo.bsky.social · 02/06/2026⚡ Our paper is now out in @natphys.nature.com ! This version now includes a detailed molecular characterisation of the optogenetic perturbations, new insights on the relevance of tricellular junctions for tissue morphology, and beautiful light-sheet timelapses. 🔬 www.nature.com/articles/s41...nature.comAdhesion-driven rigidity transition decoupled from density-driven jamming triggers epithelial organization in embryonic tissues - Nature PhysicsTissue phase transitions are key to morphogenesis. Now adhesion-driven rigidification is identified as key to epithelial organization but only if uncoupled from density-driven jamming. 15120
Reposted by Soham BasuHouse & Field Negro Quarterly @morethanmud.bsky.social · 23/05/2026the hungry observatory 300200042855
Reposted by Soham BasuVirtual Gastrulation Zoom Talks @vgzt2021.bsky.social · 19/05/2026Don’t miss this week’s VGZT session! 🤩 🗓️ Thursday, May 21st ⏰ 9:30 PDT / 12:30 EDT / 17:30 BST / 18:30 CEST Our speakers are 👉 Soham Basu (@sohambasu.bsky.social) 👉 Anestis Tsakiridis (@tsakiridis.bsky.social) See you there! 👋 075
Reposted by Soham BasuCamilla Autorino @cami-autorino.bsky.social · 11/06/2025🔔 Proud to share the preprint of my PhD work in the Petridou group @nicolettapetridou.bsky.social @embl.org ✨ “A closed feedback between tissue phase transitions and morphogen gradients drives patterning dynamics” 🐟 🔁 📶 🔗 www.biorxiv.org/content/10.1... #devbio #biophysics 🧵⤵️ 310935
Reposted by Soham Basupaveltomancak.bsky.social @paveltomancak.bsky.social · 05/05/2026Apply by May 20th to do research @mpi-cbg.de or @biohub.org. For example, my lab is open to your #ideas that loosely align with the theme of the #evolution of #morphogenesis. The name of the game is #freedom. Join us to develop an independent research line. I provide support, mentoring & technology 21913
Reposted by Soham BasuAissam Ikmi @aikmi.bsky.social · 18/04/2026Now published. Congrats to Soham and all co-authors! www.science.org/doi/10.1126/.... @embl.orgscience.orgScience | AAAS 25320
Reposted by Soham BasuAissam Ikmi @aikmi.bsky.social · 20/03/2026Our study on shape diversity in cnidarians is now published. The final version includes extensive new data that substantially extend the original bioRxiv preprint. Congrats to everyone who contributed to this work! www.cell.com/cell/fulltex... @embl.orgcell.comDeciphering mechanical determinants of morphological evolutionA comparative analysis of cnidarian larval morphogenesis combined with active surface theory identifies a set of mesoscale mechanical modules that predict species-specific shapes. Manipulating these m... 514164
Reposted by Soham BasuMax Planck Institute of Molecular Cell Biology and Genetics @mpi-cbg.de · 28/01/2026The spring call for the ELBE Postdoctoral Fellows Program is open now: www.csbdresden.de/join-us/as-a.... Join the @csbdresden.bsky.social for a fully funded fellowship. @mpi-cbg.de @mpipks.bsky.social 21712
Reposted by Soham BasuFlorian Jug @florianjug.bsky.social · 21/12/2025Funding a research institute of some hundred people for 10 years? 1.5 Billion. Funding continued defense of a small country in a war for 2 or so years? 90 Billion. Elon Musk’s personal wealth? Estimated 750 Billion. We are fine! Please move on, there is nothing to see here… 🙏 49426
Reposted by Soham Basupaveltomancak.bsky.social @paveltomancak.bsky.social · 13/12/2025#Mastodon, the Command Center for Large-Scale Lineage-Tracing Microscopy Datasets, is finally heading for publication (well, let's see). To #cite or not to cite shall no longer be the question 🙃, because the #preprint. Software is available in every #Fiji near you. www.biorxiv.org/content/10.6... 112452
Reposted by Soham BasuJain_Akanksha_ @akanksha-jain.bsky.social · 07/10/2025🧠 Join us @uzh-ch.bsky.social ! We are a new lab looking for PhDs, Postdocs & Master’s students interested in studying how human neural systems emerge & go awry using brain organoids, light-sheet imaging & genomics. 🚀 Deadline for LSZGS 1st Nov! www.lifescience-graduateschool.uzh.ch/en.html. 02412
Reposted by Soham Basupaveltomancak.bsky.social @paveltomancak.bsky.social · 07/09/2025Yesterday me and my lab celebrated #20years @mpi-cbg.de. There is a lot to say about that but the pictures from the event tell it better. Thanks city of #Dresden for the nice fireworks. That was unexpected. 10 more years or so? #LoPaTs 💕 711414
Reposted by Soham Basupaveltomancak.bsky.social @paveltomancak.bsky.social · 04/09/2025We are all super happy and proud to see our work on the function and evolution of the #cephalic #furrow published in @nature.com. Let me say a few things about the background and history of this work on the #Evolution_of_Morphogenesis (1/12) 16359122
Reposted by Soham BasuJan Rombouts @janrombouts.bsky.social · 29/08/2025Many years in the making but now finally online! What determines the temperature scaling and thermal limits of cell cycle duration in embryos? We tackled the question using a combination of dynamical systems analysis and experimental measurements in embryos and in cycling Xenopus extracts. 23311
Reposted by Soham BasuGautam Dey @gautamdey.bsky.social · 27/08/2025Final year PhD students, I know you’re desperately trying to finish experiments/revisions/submissions/write a thesis & just survive - but please spare a few minutes to apply to your dream postdoc labs. It easily takes A YEAR from first contact, even if everything goes to plan on both sides. 211553
Reposted by Soham BasuMax Planck Institute of Molecular Cell Biology and Genetics @mpi-cbg.de · 05/08/2025Stretching the immortal Hydra. Publication by @paveltomancak.bsky.social group with Carl Modes @mpi-cbg.de & @zechnerlab.bsky.social shows how cells can create a new organism from scratch by coordinating their mechanical properties. @anaisbailles.bsky.social @pnas.org www.mpi-cbg.de/news-outreac...mpi-cbg.deStretching the immortal HydraDresden researchers show how cells can create a new organism from scratch by coordinating their mechanical properties. 14616
Reposted by Soham BasuToby Andrews @tobyandrews.bsky.social · 06/08/2025Thrilled to bits to see our latest work online in Dev Cell! 🥳 We wanted to know how cells build functional organs with precision🫀🫁📏 Here we show how coupling of cell shape and organ function fine tunes the form and contractile power of the developing #zebrafish heart 1/n tinyurl.com/cell-stretchtinyurl.comMechanochemical coupling of cell shape and organ function optimizes heart size and contractile efficiency in zebrafishAndrews et al. demonstrate that multiscale feedback between mechanical and chemical cues builds a functional heart to support zebrafish embryonic life. Cell recruitment and organ-scale forces drive tr... 711036
Reposted by Soham BasuAnaïs Bailles @anaisbailles.bsky.social · 06/08/2025Very happy that the first article from my postdoc work in the Tomancak lab is now published @PNAS! www.pnas.org/doi/10.1073/.... We studied the self-organization of actin in aggregates made from Hydra cells. Thread below (1/9) 314841
Reposted by Soham BasuEMBL @embl.org · 29/11/2024EMBL scientists have used sea anemones to study how animals restore their shape following major injuries. The results show how, in regenerating animals, systemic molecular and cellular changes help in regaining the original shape. 🪄 www.embl.org/news/science... 🧪 #MolBiol 0295
Reposted by Soham BasuAissam Ikmi @aikmi.bsky.social · 28/05/2025We thought we were just studying mesoglea biogenesis…Turns out Nematostella has been hiding a sophisticated backup pressure valve! Work driven by the talented PhD student Soham Basu! @embl.org www.biorxiv.org/content/10.1... 16821