Sign in

Alex Palazzo

@ribonucleicacids.bsky.social
908 followers 644 following 288 posts

Professor of Biochemistry at the University of Toronto. Studies mRNA processing, mRNA nuclear export, mRNA translation, genomic evolution, junk DNA, junk RNA. www.palazzolab.com

PostsRepliesMedia
Reposted by Alex Palazzo
Will Ratcliff @wcratcliff.bsky.social · 28/09/2026
New paper out with @kaylastoy.bsky.social: academic.oup.com/evlett/advan...
812256
Reposted by Alex Palazzo
Epigenetics Podcast @epigeneticspod.bsky.social · 28/09/2026
In the most recent episode we speak with @robklose.bsky.social, Professor of Genetics at the University of Oxford, about how CpG islands help control gene expression and chromatin regulation during development. #podcast #epigenetics Listen here: activemotif.com/podcasts-rob...
1156
Reposted by Alex Palazzo
Carl Zimmer @carlzimmer.com · 27/09/2026
Four days ago, a scientist was surprised by the news that Anthropic discovered new virus genes for making DNA. He says he’s been studying them for years—and feeding his data to Anthropic’s AI as part of his own research. Coincidence? Here’s my story. nyti.ms/3VSWayc
nyti.ms
Did Anthropic’s A.I. Really Make a Scientific Discovery on Its Own? (Gift Article)
An expert at the University of Copenhagen said his team had been sharing its research with the company’s A.I. model, Claude, and that its new finding matched their work.
892117865
Alex Palazzo @ribonucleicacids.bsky.social · 25/09/2026
Great thread. Mosquitos, plasmodium, isoleucine and globin genes.
020
Reposted by Alex Palazzo
Rasmus Jensen @rasmusjensen.bsky.social · 25/09/2026
🎉 Out today in Cell: the paper I've been looking forward to sharing for a long time 🎉 We used cryo-ET to find a molecular machine nobody knew existed on the surface of a minimal bacterium, and worked out what it does. 🧵(1/7) #TeamTomo #cryoET
1023192
Reposted by Alex Palazzo
Ricard Solé @ricardsole.bsky.social · 24/09/2026
What if the origin of life was not a single transition, but a cascade of them? This paper by J. Aguirre & co offers a systems view of how complexity may have emerged across chemical, informational & ecological levels. @manlius.bsky.social @brionesci.bsky.social www.sciencedirect.com/science/arti...
1285
Alex Palazzo @ribonucleicacids.bsky.social · 24/09/2026
You gotta love this guy!
000
Reposted by Alex Palazzo
Joachim Goedhart @joachimgoedhart.bsky.social · 24/09/2026
Thanks for sharing this version, to me the most stunning part is the region where the cilia seem to appear (out of nowhere?)
2164
Reposted by Alex Palazzo
Simon Cleary @simoncleary.bsky.social · 24/09/2026
Even if it were ok to add AI-generated details in the lower half of the movie, what we are now told is a section of one ciliated cell is way too wide to be based on real images of one cell.
4188
Reposted by Alex Palazzo
Nature @nature.com · 23/09/2026
Nature research paper: The gene-regulatory evolution of the human skeleton go.nature.com/46GUxG8
go.nature.com
The gene-regulatory evolution of the human skeleton - Nature
Massively parallel reporter assays and human–ape hybrid skeletal cells are used to study the evolution of human cis-regulatory elements (CREs), revealing how differences in CREs have shaped the composition of human skeletal tissue.
0198
Reposted by Alex Palazzo
Maksim Kalutskii @maksimkalutskii.bsky.social · 23/09/2026
Excited to share our new preprint! 📜 Here, we used CALVADOS and ultra-CG models to show how the kinetochore establishes a robust attachment to the dynamic microtubule end. Spoiler: IDRs 🧵 1/n www.biorxiv.org/content/10.6...
17031
Reposted by Alex Palazzo
Christophe 🔬 Leterrier @christlet.bsky.social · 22/09/2026
This is the updated part. Looks like the movie is an AI-generated fluorescence image from a non-labeled acquisition technique. No indication that the Small World jury and organizers have requested and verified the raw data (as mentioned as a possibility in the competition rules)
155023
Reposted by Alex Palazzo
Mark Peifer (He, him) @peiferlabunc.bsky.social · 22/09/2026
Nikon's response to me on Linked in: "We’ve updated our detailed article with insights from the winner, which may answer some of your questions. We encourage you to check out the link to dive deeper into the technical details" 1/n www.nikonsmallworld.com/masters-of-m...
nikonsmallworld.com
Ning Xu: Studying Disease through Motion
Updated: September 22, 2026Welcome to Masters of Microscopy: The People Behind the Lens, where we showcase and celebrate the individuals at the heart of the Nikon Small World competitions. They are sc...
4183
Alex Palazzo @ribonucleicacids.bsky.social · 22/09/2026
I'm looking for someone with a ".edu" email to access a database for us. Apparently, our Canadian university email addresses (which end with a ".ca") triggers an automatic flag stating "this is not an educational email". We emailed the database, but have not received a response.
001
Alex Palazzo @ribonucleicacids.bsky.social · 21/09/2026
We've used Bindcraft1 with great success. Looking forward to this update.
020
Reposted by Alex Palazzo
Terence Tao @teorth.bsky.social · 11/09/2026
A group of 25 Fields Medalists, including myself, have made a joint declaration on Math and AI: mathandai.org . We welcome additional signatories. See also this article in the Economist announcing the declaration: www.economist.com/science-and-...
mathandai.org
Declaration — Math and AI
Read the declaration and add your name.
422052926
Reposted by Alex Palazzo
James Talarico @jamestalarico.bsky.social · 11/09/2026
This is the interview Trump’s FCC doesn’t want you to see. We’re not just going up against the most corrupt politician in Texas. We’re going up against this entire corrupt system.
11748881841
Reposted by Alex Palazzo
Florian Mayer @florianmayer.bsky.social · 11/09/2026
Excited to share our preprint on Ignicoccus cell divison: only the inner membrane divides, progeny cells accumulate in cell clusters and pop-out! www.biorxiv.org/content/10.6... Great work with the labs: @buzzbaum.bsky.social @curiousdina.bsky.social @anja1.bsky.social @tbharat-lab.bsky.social
biorxiv.org
The life cycle of an archaeon with multiple membranes
Many prokaryotes are diderms. They divide using an FtsZ division ring to simultaneously constrict physically coupled inner and outer membranes to form daughter cells with two membranes. Currently, onl...
07433
Reposted by Alex Palazzo
Philippe Batut @philippebatut.bsky.social · 10/09/2026
🧬🔬 Why are enhancers transcribed and how does that impact gene regulation? I’m really excited to share our new paper in @science.org showing that noncoding RNAs control the timing of gene activation in embryos. With Mike Levine #ScienceResearch @columbiamed.bsky.social A few highlights below... 🧵👇
science.org
Noncoding transcription controls the developmental dynamics of long-range gene regulation
The genomic regions regulating gene expression are often themselves transcribed into a variety of noncoding RNAs (ncRNAs). However, the regulatory roles of this noncoding transcription remain largely ...
5233114
Reposted by Alex Palazzo
Anton Goloborodko @golobor.bsky.social · 03/09/2026
1/ out in @science.org! We found a new asymmetry in large-scale chromosome structure: sister chromatids are shifted by hundreds of kb in the 5′→3′ direction of their inherited strands! A close collaboration w/ @gerlichlab.bsky.social , led by @flaviacorsi.bsky.social www.science.org/doi/10.1126/...
215263
Reposted by Alex Palazzo
mareikejordan.bsky.social @mareikejordan.bsky.social · 04/09/2026
Check out our preprint on the structural mechanisms of how LEM2 and ESCRTs seal the nuclear envelope. Awesome collaboration with @karenpalacior.bsky.social who brought my structures to life 💃🔬❄️🌀 @hummerlab.bsky.social www.biorxiv.org/content/10.6...
212849
Reposted by Alex Palazzo
Gary Stevenson @garyseconomics.bsky.social · 04/09/2026
Why governments are poorer now
718170
Reposted by Alex Palazzo
Molecular Cell @cp-molcell.bsky.social · 03/09/2026
A conserved mechanism of membrane fusion in nuclear pore complex assembly
dlvr.it
A conserved mechanism of membrane fusion in nuclear pore complex assembly
Fischer et al. uncover a fundamental mechanism of membrane fusion during nuclear pore complex (NPC) assembly. Brl1 and Brr6 form ring-shaped, membrane-remodeling complexes that interact and bridge the nuclear envelope at NPC-assembly sites to mediate fusion. This pathway is conserved in humans via the metazoan fusogen CLCC1.
053
Alex Palazzo @ribonucleicacids.bsky.social · 02/09/2026
Earlier in the week, our perspective (actually labelled an "Innovational Perspective") came out in FEBS Letters. At the time I had no time to piece together a thread, but I have some time today so here we go ... 1/n
153
Reposted by Alex Palazzo
Max Planck Institute of Biochemistry @mpibiochem.bsky.social · 02/09/2026
Ten years ago, our director, Stefan Jentsch, passed away. A memorial symposium will be held in his honour on October 23. Many of his former colleagues and friends will be in attendance. Would you like to join? Please register until October 1: ❕https://eveeno.com/256035281 #Ubiquitin #Symposium
01911
Alex Palazzo @ribonucleicacids.bsky.social · 31/08/2026
Very proud of our new perspective that was just published: From junk to function — How weak selection in eukaryotes builds new parts and drives genomic complexity In it, (I think) we give the most comprehensive account of how new genomic parts emerge. doi.org/10.1002/1873...
doi.org
FEBS Press
How do genomes gain new functional parts? In eukaryotes, which tend to evolve under weak selection, much of the genome is junk. Palazzo and Qiu borrow the logic of Markov chains to show how non-funct...
0114
Alex Palazzo @ribonucleicacids.bsky.social · 27/08/2026
Nice review by Bill Martin on the origins of metabolism from metal catalysts.
cell.com
Shiny metal catalysts at the origin of metabolism
Metabolism is the reaction network that converts inanimate matter into living cells. There is no life without it. The network of approximately 400 enzymatic reactions that synthesize amino acids, nucl...
000
Reposted by Alex Palazzo
Jamie Cate @jhdcate.bsky.social · 27/08/2026
Ribosomes have a strange protein modification in a universally-conserved protein uS11. This modification, isoaspartate, is also conserved in nearly all forms of life. We originally found this modification using cryo-EM, but had no idea how it was formed. 1/ elifesciences.org/articles/60482
elifesciences.org
Structure of the bacterial ribosome at 2 Å resolution
High-resolution maps and models of the bacterial ribosome provide new chemical insights into protein synthesis, and should enable the development of robust tools for cryo-EM structure modeling and ref...
26122
Reposted by Alex Palazzo
Jennifer Ouellette @jenlucpiquant.bsky.social · 25/08/2026
Our University Does Not Require Books, Paper, or Human Knowledge [SATIRE, for now at least] www.mcsweeneys.net/articles/our...
mcsweeneys.net
Our University Does Not Require Books, Paper, or Human Knowledge
“Such a radical shakeup in learning has never happened before, as far as I know. Is there even a way to learn about whether or not something has happened bef...
0247
Reposted by Alex Palazzo
Timothy Fuqua @timothyfuqua.bsky.social · 19/08/2026
@vakirlis.bsky.social and I are proposing a new term in the de-novo genes / molecular evolution cinematic universe. The term is: "Emergence Bias" and our perspective piece describing it was published in @genomebiolevol.bsky.social today! So, what is an emergence bias? (1/7)
academic.oup.com
Emergence Biases in Molecular Evolution
Abstract. Biases in molecular evolution can significantly influence evolutionary trajectories. They have been described in a variety of contexts, such as d
14518
Alex Palazzo @ribonucleicacids.bsky.social · 15/08/2026
Up on Sandwalk: a discussion of Bill Martin's paper on the idea that many catalytic steps in metabolic pathways were derived from metal catalysts and that some of these were present in LUCA and independently replace in bacteria & archea. sandwalk.blogspot.com/2026/08/the-...
sandwalk.blogspot.com
The evolution of metabolic enzymes in LUCA, Bacteria, and Archaea
240
Alex Palazzo @ribonucleicacids.bsky.social · 15/08/2026
"Indeed, the gap between Black and white mortality rates during [2000-2010] was 20 times greater in those counties compared with ones with no slavery recorded in the 1860 U.S. census." !!! www.science.org/content/arti...
science.org
Slavery linked to mortality gap between Black and white Americans today
New study is among the first to quantify and explain slavery’s influence in contemporary U.S. health disparities
072
Reposted by Alex Palazzo
Earth BioGenome Project 🌍 @ebpgenome.bsky.social · 13/08/2026
🧬 The VGP Phase I preprint is out! 🎉 The Vertebrate Genomes Project has completed Phase I, delivering 816 of the highest-quality vertebrate reference genomes ever produced. Explore this major new resource for vertebrate genomics: 📄 tinyurl.com/VGPphase1 @vertebrategenomes.bsky.social #Genomics
Graphic featuring a collage of diverse vertebrates, including a chameleon, sea turtle, frog, whale, bat, duck, axolotl, shark, echidna, salamander, bird, tropical fish, leopard, crocodile, cassowary, clownfish, Komodo dragon, snake and deep-sea fish. Text reads: “A New Milestone for Vertebrate Genomics.” The Vertebrate Genomes Project (VGP) has completed Phase I, delivering 816 high-quality reference genomes spanning 95% of vertebrate orders.Underwater photograph of a humpback whale swimming beneath the ocean surface. Text reads: “Why Vertebrates? More than 70,000 vertebrate species inhabit our planet.” High-quality reference genomes help researchers understand evolution, biodiversity, conservation and adaptation.
13325
Reposted by Alex Palazzo
Meg Mindlin @invertebabe.bsky.social · 29/07/2026
New research just dropped today that makes octopuses even weirder than they already are… let me explain🧵🧪🐙🐡🦑
OCTOPUSES JUST GOT WEIRDER
Featuring an illustration of a two spot octopus with a blue and purple ribosome behind it
7285121
Reposted by Alex Palazzo
Annalee Newitz @annaleen.bsky.social · 27/07/2026
FYI there is no "real" reason why Rome "fell." Its power waned for the usual, mundane reasons: widening gap between rich and poor, inability to maintain infrastructure, incompetent leadership, pointless wars, endless persecution of marginalized groups who performed vital labor, etc.
13063821413
Reposted by Alex Palazzo
Shujun Ou @sigmafacto.bsky.social · 27/07/2026
We reengineered the TIR-Learner for 60-100 times faster de novo search of Terminal Inverted Repeat transposons. We completed annotating 579 vertebrate genomes in 4 hours! Kenji Gerhardt did all the heavy lifting for this "side project".
01810
Reposted by Alex Palazzo
Florent Waltz @florentwaltz.bsky.social · 27/07/2026
This story is now published in @natplants.nature.com ! 🎉🎩 Check out the final article here: nature.com/articles/s41477-026-02361-1 Very similar to the original bioRxiv preprint, with the addition of some cool polysome analysis (in the supplementals)! Thanks and congrats to everyone involved! 🙏
nature.com
Chloroplast-encoded small subunit extensions reshape the Chlamydomonas chlororibosome - Nature Plants
Using in situ cryo-electron tomography, researchers found a unique ‘arm’ domain on the small subunit of Chlamydomonas chlororibosomes. This discovery suggests that chlororibosome structure is more evo...
29836
Reposted by Alex Palazzo
Molecular Cell @cp-molcell.bsky.social · 24/07/2026
Online Now: The +1 nucleosome functions in RNA Pol II transcription initiation and the transition to elongation Online now:
dlvr.it
The +1 nucleosome functions in RNA Pol II transcription initiation and the transition to elongation
By combining biochemical assays and electron cryo-microscopy, Zhan, Abril-Garrido, et al. elucidated key steps of transcription initiation and the transition to elongation in the presence of the +1 nucleosome. The authors demonstrated for the first time that the +1 nucleosome has an active role in the initiation-elongation transition.
0104
Reposted by Alex Palazzo
Derek Lowe @dereklowe.bsky.social · 23/07/2026
Thoughts on the various Trump administration proposals to revamp US science funding - and what they all have in common:
science.org
The Assault On Science Funding Continues
3309155
Reposted by Alex Palazzo
Pedro Beltrao @pedrobeltrao.bsky.social · 23/07/2026
Review/perspective article by Diederik Laman Trip on some of his and our lab's thinking on how we can study human genetics across different levels. In particular around cell-type specific protein interactions, tissue organization and organ morphology. (paywall, shareable link rdcu.be/fvnpz)
rdcu.be
Human genetics across levels of biological organization
Nature Reviews Genetics - Genetic variation influences biological processes across scales; however, deciphering how effects propagate from molecules to whole organisms remains a key challenge in...
0145
Reposted by Alex Palazzo
School of Cities @uoftcities.bsky.social · 01/10/2025
The distribution of public land in cities has serious implications for how we move, how safe we feel, and who can access opportunities. @lanrickbennett.bsky.social + our data viz team find that 80% of T.O. street space is dedicated to motor vehicles:
schoolofcities.github.io
Who are streets for?
More than 80% of street space in Toronto is inequitably dedicated to motor vehicles. How can this be fairly re-designed?
1257
Alex Palazzo @ribonucleicacids.bsky.social · 19/07/2026
Tuesday I will be talking about our work on how non-adaptive evolution shapes the 5'ends of human protein-coding genes as part of the evol-mut-circle online seminar series (@evolarlin.bsky.social should be posting details in the next day or so)
221
Reposted by Alex Palazzo
Alejandro Montenegro @aemonten.bsky.social · 15/07/2026
Interesting. Full deletion of all introns in yeast was actually my project in the Staley lab, *20 years ago*. I actually found a bunch of phenotypes. We did this in collaboration with the Guthrie lab. www.cell.com/cell/abstrac...
cell.com
A spliceosome-independent eukaryote generated by complete intron removal
Elimination of all spliceosomal introns reveals a spliceosome-independent eukaryote.
26021
Reposted by Alex Palazzo
Cell Biology J-Club @cellclub.bsky.social · 14/07/2026
Cytoplasmic circular dsDNA is a key constituent of stress granules doi.org/10.7554/eLif...
doi.org
Cytoplasmic circular dsDNA is a key constituent of stress granules
Extrachromosomal circular DNA has been identified as a novel component of stress granule cores, indicating its essential involvement in eukaryotic stress response pathways at the level of protein synt...
083
Reposted by Alex Palazzo
Jason Tan @yjtan.bsky.social · 30/06/2026
Does every enhancer work with every promoter? With @jengreitz.bsky.social and Will Greenleaf, we revisit this long-debated question and resolve an outstanding contradiction in the field. A tour 🧵👇 www.biorxiv.org/content/10.6...
biorxiv.org
Intrinsic promoter responsiveness dictates sensitivity to transcriptional activation by enhancers
Enhancers activate specific target promoters, but whether intrinsic enhancer-promoter compatibility contributes to this specificity is debated. Recent studies using different reporter assays have reac...
37039
Alex Palazzo @ribonucleicacids.bsky.social · 29/06/2026
If you are at #SMBE2026 go see Fanny Pouyet's talk about our work on how TSS-associated mutations and gBGC impact the evolution of gene starts.
022
Reposted by Alex Palazzo
Jim Woodgett @jwoodgett.bsky.social · 26/06/2026
Our academic institutions salivate over proxies that purport to predict the future. Academic impact *can only* be accurately achieved post facto - at least 5-10 years. What implementation of prediction tools does do, is switch incentives to short term/low risk work. The antithesis of real impact.
3103
Reposted by Alex Palazzo
The New York Times @nytimes.com · 21/06/2026
In Opinion The system that turned Gila monster venom into GLP-1 drugs is being dismantled through research budget cuts, Jeff Coller writes in a guest essay. “Less support for scientists means strange questions no one will get to chase. Exploring those questions is how medicine advances.”
nyti.ms
Opinion | We Need to Keep Funding Weird Science
Science turned a serendipitous finding about lizard venom into one of the most important drugs of the century, but that type of research is getting harder to do.
22602203
Reposted by Alex Palazzo
Jeff Coller @jmcoller.bsky.social · 24/06/2026
Ten months ago I had never written an op-ed. I believed the work spoke for itself. It doesn't. When the government calls a lifesaving technology unsafe and scientists stay silent, the silence becomes the story. A new @jhu.edu profile on why I stopped staying quiet: hub.jhu.edu/2026/06/24/j...
hub.jhu.edu
A staunch voice in support of science
Jeff Coller, a pioneering RNA biologist, has spent the past year vehemently advocating for the lifesaving promise of research in the face of federal cuts
15829
Reposted by Alex Palazzo
Yasin Dagdas @plantophagy.bsky.social · 23/06/2026
The academic hiring system is simply not designed for candidates like me. It privileges a kind of performative intellectualism—the ability to stand at a whiteboard and extemporize about science as if you were some kind of 19th-century naturalist 😂 😂 😂 open.substack.com/pub/inprepar...
open.substack.com
Opinion: I Was Not Allowed To Type Prompts Into ChatGPT During My Chalk Talk And This Is Discrimination
By Dr. Rachel Simmons, Postdoctoral Fellow, Stanford University
45115