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pm-lab

@pm-lab.bsky.social
1.2K followers 1.1K following 107 posts

#Mitochondria, #MitochondrialDisease, #BrainMetabolism, Stroke, and #CellDeath researcher, Translational Neurologist, Clinician Scientist, Einstein Junior Fellow 🔬🧠🧪👨‍⚕️

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pm-lab @pm-lab.bsky.social · 28/07/2026
At long last... A huge collaborative effort! 🦠🧠🫀🫁🧪🧫🔬 @bihatcharite.bsky.social
thelancet.com
Low reporting quality limits the contribution of human organ models to COVID-19 research: a systematic review
Strengthening community-driven reporting standards and methodological transparency is essential to enable robust evidence synthesis and to fully realise the potential of human organ models in future p...
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pm-lab @pm-lab.bsky.social · 13/07/2026
Excited to share our new paper! We analyzed LRP4-Ab-associated #MyastheniaGravis, revealing a distinct phenotype with a high disease burden & treatment needs. #MGStrong #MGWarrior #LivingWithMG #MyastheniaGravisNews #RareDisease #neuromuscular
doi.org
Phenotype, Severity, and Therapy of Patients With LRP4 Antibody-Associated Myasthenia Gravis in the German Myasthenia Gravis Registry | Neurology
ObjectivesLipoprotein receptor-related protein 4 antibody-positive myasthenia gravis (LRP4-Ab-positive MG) is a rare serologic subgroup with poorly defined clinical phenotype. This study investigated ...
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Steffen Rulands @rulands.bsky.social · 29/04/2026
New paper out in Nature Physics: we show that the embryonic epigenome forms according to universal physical rules. www.nature.com/articles/s41...
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Devine lab @devinelab.bsky.social · 13/03/2026
⚡️We are excited to share a new paper from the lab by @drkhole.bsky.social in @cp-cellrepmethods.bsky.social - suggesting MitoTracker dyes are not a reliable tool for detecting intercellular mitochondrial transfer❗️ www.cell.com/cell-reports...
cell.com
MitoTracker transfers from astrocytes to neurons independently of mitochondria
The mitochondrial dye MitoTracker is commonly used to investigate intercellular mitochondrial transfer (IMT), particularly between astrocytes and neurons. Hole et al. compare MitoTracker with a geneti...
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Ask Erin / Dear Beth @askerindearbeth.bsky.social · 17/02/2026
Ep 25 - from our new AE/DB Bsky account! It's a great one from @erinweisbart.bsky.social - once we've done Cell Painting and gotten our data, how do we interpret the measurements into biology? She and @bethcimini.bsky.social walk you through it. PLUS, in honor of our silver episode, bonuses (1/2)
youtu.be
Interpreting Cell Painting Features: Classic Cell Profiler Features - AskErinDearBeth Episode 25
YouTube video by Ask Erin, Dear Beth
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pm-lab @pm-lab.bsky.social · 27/03/2026
🔬🧪🧠⚡Now also out as a detailed protocol. #brain glucose #metabolism #MRI #NeuroSky ⏬⏬ journals.plos.org/plosone/arti...
journals.plos.org
Measuring cerebral glucose metabolism by chemical exchange-sensitive spin-lock (CESL) MRI of 2-deoxy-D-glucose in rodents
Magnetic resonance imaging (MRI) of glucose metabolism shows significant potential for identifying disease biomarkers and monitoring therapeutic responses in neurological conditions. Here, we present ...
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Steffen Rulands @rulands.bsky.social · 11/02/2026
There is a strange phenomenon in epigenetics where cells use energy to cycle chemical DNA modifications.Nobody knows what such oscillations are good for. We show that chromatin-mediated interactions lead to complex genomic patterns in DNA methylation oscillations.@prxlife.bsky.social bit.ly/4tBS1LJ
bit.ly
Spatiotemporal Patterns of Active Epigenetic Turnover
Chromatin-mediated coupling between cycles of DNA methylation and demethylation can lead to the emergence of phase-locked domains --- regions of locally synchronized turnover activity whose coarsening...
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Fabian Theis @fabiantheis.bsky.social · 05/02/2026
CellRank protocol now in @NatureProtocols! 🎉 @PhilippWeiler's detailed guide shows how to: - Integrate velocity, pseudotime & time points - Infer cell fate probabilities - Analyze lineage priming at scale Great complement to our CellRank 2 paper! 📖 www.nature.com/articles/s41...
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Steffen Rulands @rulands.bsky.social · 05/12/2025
Check out our workshop on mechanisms by which 1D and 3D processes are integrated in the genome: pks.mpg.de/neg26. I am organizing this with Buddhapriya Chakrabarti, Srinjan Basu and Angelo Rosa. #epigenetics #genomics #physics #chromatin #genomeorganization
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pm-lab @pm-lab.bsky.social · 09/07/2025
🔬🧪🧠⚡ I am extremely happy to announce that our paper on imaging #brain glucose #metabolism using metabolic #MRI in a 🐀 rat model of ischemic stroke is now published in #JCBFM (journals.sagepub.com/doi/10.1177/...). #OpenAccess #OpenData Check the🧵 🤓 #NeuroSky ⏬⏬
2DG CESL MRI in rat brain after stroke.
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Dave Barry @david-j-barry.bsky.social · 17/04/2025
"This symposium explores the power of microscopy imaging as a data-rich resource for quantifying cellular phenotypes, with a strong focus on high-content imaging techniques such as Cell Painting and their applications in drug discovery and basic cell biology" cytodata25.eu-openscreen.eu
CytoData 2025 Event Poster
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Steffen Rulands @rulands.bsky.social · 19/03/2025
New preprint: How do cells measure time? In human development, pluripotent epiblast cells pause for about two weeks before differentiating into more specialised cell types. We show that this timing is controlled by a transcriptional clock that works like an hourglass. www.biorxiv.org/content/10.1...
biorxiv.org
A transcriptional clock of the human pluripotency transition
Developmental timing differs strikingly between mammals. All embryonic and some placental lineages emerge from the pluripotent epiblast in a temporally defined sequence, lasting about two weeks in the...
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Nikhil Garg @nkgarg.bsky.social · 10/03/2025
*Please repost* @sjgreenwood.bsky.social and I just launched a new personalized feed (*please pin*) that we hope will become a "must use" for #academicsky. The feed shows posts about papers filtered by *your* follower network. It's become my default Bluesky experience bsky.app/profile/pape...
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pm-lab @pm-lab.bsky.social · 11/03/2025
I am very pleased to have contributed to this work. Hopefully, it finds wide recognition. @fmp-berlin.de pubs.acs.org/doi/full/10....
pubs.acs.org
Highly Specific Miniaturized Fluorescent Monoacylglycerol Lipase Probes Enable Translational Research
Monoacylglycerol lipase (MAGL) is the pivotal catabolic enzyme responsible for signal termination in the endocannabinoid system. Inhibition of MAGL offers unique advantages over the direct activation of cannabinoid receptors in treating cancer, metabolic disorders, and inflammatory diseases. Although specific fluorescent molecular imaging probes are commonly used for the real-time analysis of the localization and distribution of drug targets in cells, they are almost invariably composed of a linker connecting the pharmacophore with a large fluorophore. In this study, we have developed miniaturized fluorescent probes targeting MAGL by incorporating a highly fluorescent boron-dipyrromethene (BODIPY) moiety into the inhibitor structure that interacts with the MAGL active site. These miniaturized fluorescent probes exhibit favorable drug-like properties such as high solubility and permeability, picomolar potency for MAGL across various species, and high cell selectivity and specificity. A range of translational investigations were conducted, including cell-free fluorescence polarization assays, fluorescence-activated cell sorting analysis, and confocal fluorescence microscopy of live cancer cells, live primary neurons, and human-induced pluripotent stem cell-derived brain organoids. Furthermore, the application of red-shifted analogs or 18F positron emission labeling illustrated the significant versatility and adaptability of the fluorescent ligands in various experimental contexts.
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pm-lab @pm-lab.bsky.social · 10/03/2025
Still time to apply for this PostDoc opportunity 👇👇👇
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mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · 20/01/2025
The next-generation open-source "Benchtop" #mesoSPIM light-sheet microscope, with open access to everyone. Find the detailed blueprints on how to build your own, and examples of applications, from neuroscience to astrophysics! link.springer.com/article/10.1...
link.springer.com
Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for cleared samples - Nature Communications
In 2015, we launched the mesoSPIM initiative, an open-source project for making light-sheet microscopy of large cleared tissues more accessible. Meanwhile, the demand for imaging larger samples at hig...
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pm-lab @pm-lab.bsky.social · 07/02/2025
🚨 Job Alert 🚨🔬🧪👩‍💻🖥️ Are you interested in #BioimageAnalysis #ComputerVision #AI #ML methods for the #LifeSciences? Do you want to work on #DigitalPathology of tissues, cells, organelles? Check out this #PostDoc opportunity in a collaboration with Jens Rittscher from @oxengsci.bsky.social @ox.ac.uk
karriere.charite.de
Research assistant / Post-doctoral fellow image analysis - Center for Stroke Research DM.16.25
full-time | 21.02.2025 | Campus Charité Mitte
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Paolo Crosetto @paolocrosetto.bsky.social · 23/11/2024
The Economist covered our "Strain on scientific publishing" paper. What is this all about? We collectively churn out more & more papers *per scientist*, an increasing pace, in a rapidly changing publication landscape. Why? How? Want to make sense of this? 🧵 www.economist.com/science-and-...
economist.com
Scientific publishers are producing more papers than ever
Concerns about some of their business models are building
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pm-lab @pm-lab.bsky.social · 06/02/2025
🚨🚨🚨 #Preprint Alert 🚨🚨🚨 🔬🧪🧠⚡ I am thrilled to share our recent preprint on imaging #brain glucose #metabolism using metabolic #MRI in a rat model of ischemic stroke. Great collaboration with @pboehmsturm.bsky.social @docbeardface.bsky.social and many more sadly all not on here. A brief 🧵 #NeuroSky
doi.org
2-deoxy-D-glucose chemical exchange-sensitive spin-lock MRI of cerebral glucose metabolism after stroke in the rat
Rapid breakdown of cerebral glucose metabolism is a hallmark in stroke pathology. Metabolic activity delineates the penumbra from the infarct core, representing tissue that is potentially salvageable ...
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Razvan Borza @rborza.bsky.social · 17/11/2024
⚠️THREAD OF ALL SCIENCE-RELATED STARTER PACKS! ⚠️ 🔄Share to help people finding its topic/field - STRUCTURAL BIOLOGY Structural Biology 1: bsky.app/starter-pack... Structural Biology 2: bsky.app/starter-pack... Crystallography: bsky.app/starter-pack... Synchrotron&CryoEM: bsky.app/starter-pack...
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Steffen Rulands @rulands.bsky.social · 14/01/2025
New preprint: are deep neural networks just complicated curve fitters or can they show emergent behavior that is independent of the data? We show that training deep neural networks gives rise to emergent weight morphologies independent of the training data. arxiv.org/abs/2501.05550
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Antony Dodd @antdodd.bsky.social · 13/01/2025
Post-doc opportunity in my lab at JIC, on the Bacillus subtilis circadian clock and interactions with plants. Part of ERC Synergy programme "MicroClock", collaborating with @evolvedbiofilm.bsky.social and Martha Merrow #chronobiology @microclockerc.bsky.social www.jic.ac.uk/vacancies/po...
Logo of MicroClock programme, with photos of Martha Merrow, Antony Dodd and Akos Kovacs
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Juan C. Landoni @jclandoni.bsky.social · 09/01/2025
New #mito peeps keep joining! Don't miss out on their awesome stuff! go.bsky.app/J6Bu5fL
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Cristina Muñoz Pinedo @crismunozp.bsky.social · 23/12/2024
Latest articles on cell death. Bcl-2 family proteins, death receptors, necroptosis, ferroptosis, pyroptosis, clearance of apoptotic cells, caspases and more! Apolist celldeath.wordpress.com/2024/12/23/a...
celldeath.wordpress.com
ApoList Nov-Dec 2024
Bcl-2 family proteins Inhibition of BAK-mediated apoptosis by the BH3-only protein BNIP5 – Sebastian Rühl, Zhenrui Li, Shagun Srivastava, Luigi Mari, Clifford S. Guy, Mao Yang, Tudor Moldovea…
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Max Gutierrez @maxgg.bsky.social · 25/12/2024
These studies are so important. Well done to the authors and the journal for publishing it. This certainly applies to so many antibodies. Companies selling antibodies should do and provide the right controls before commercialisation. www.nature.com/articles/s41...
nature.com
Why Bax detection in >1400 publications might be flawed - Cell Death & Disease
Cell Death & Disease - Why Bax detection in >1400 publications might be flawed
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Johan Duchêne @johanduchene.bsky.social · 25/12/2024
Why Bax detection in >1400 publications might be flawed? The culprit: a poorly validated antibody that went unchecked for years … until recently !!!
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Johan Duchêne @johanduchene.bsky.social · 25/12/2024
Why Bax detection in >1400 publications might be flawed? The culprit: a poorly validated antibody that went unchecked for years … until recently !!!
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Barak Rotblat @barakrotblat.bsky.social · 23/12/2024
crappy anti BAX antibodies www.nature.com/articles/s41...
nature.com
Why Bax detection in >1400 publications might be flawed - Cell Death & Disease
Cell Death & Disease - Why Bax detection in >1400 publications might be flawed
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pm-lab @pm-lab.bsky.social · 23/12/2024
Just stumbled on this 💎 of a paper at my end-of-the-year review of the #apoptosis #Bax #Bcl2 literature (i.e., trying to get that last paper out). Can't stress enough how glad I am that this gets reported and has a venue in a high profile journal! 🔬🧪👍👍👍 @natureportfolio.bsky.social
nature.com
Why Bax detection in >1400 publications might be flawed - Cell Death & Disease
Cell Death & Disease - Why Bax detection in >1400 publications might be flawed
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Altmetric @altmetric.com · 23/12/2024
REPORT For the last four years Austria has been measuring the online dissemination of both its open and closed publications, using the Altmetric Explorer to evaluate hundreds of thousands of items published nationally. Their report is now out, also translated into English.
zenodo.org
The visibility of open access publications – Results of sub-project 5 of Austrian Transition to Open Access 2 (AT2OA2)
Subproject 5 - Visibility of Open Access Publications of Austrian Transition to Open Access 2 (AT2OA2) was dedicated, among other things, to whether Open Access, in addition to improving the availabil...
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Braydon Dymm, MD @befast.bsky.social · 18/12/2024
🎁 As we wrap up 2024, let's review the most significant stroke research breakthroughs in each month, from practice changing updates to glimpses of the future. After discovering The Precarious Painter and "chopperlysis," stroke care will never be the same 👇
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Oliver Harschnitz @harschnitz.bsky.social · 15/12/2024
Created a second stem cell biology starter pack, as the first one was full. Let me know if you would like to be added! go.bsky.app/UG3eYwU
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pm-lab @pm-lab.bsky.social · 04/12/2024
Does anyone know of a #CircadianMedicine #StarterPack? #circadian #chronobiology #ChronoTherapy
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Guillaume Jacquemet @guijacquemet.bsky.social · 15/11/2024
My #BioimageTooloftheDay is an easy one: Cellpose by @computingnature.neuromatch.social.ap.brid.gy and colleagues An awesome DL-segmentation network to segment cells from microscopy images www.nature.com/articles/s41... When we do not use StarDist, we use Cellpose 😀
nature.com
Cellpose 2.0: how to train your own model - Nature Methods
Cellpose 2.0 improves cell segmentation by offering pretrained models that can be fine-tuned using a human-in-the-loop training pipeline and fewer than 1,000 user-annotated regions of interest.
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pm-lab @pm-lab.bsky.social · 27/11/2024
#NeuroJobs
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pm-lab @pm-lab.bsky.social · 27/11/2024
🚨 We're hiring! 🔬 Join our team to explore the fascinating intersection of #stroke, #circadian rhythms, #metabolism, #celldeath, and #brain #organoids. Be part of groundbreaking research!  #NeuroScienceJobs #PhDposition  karriere.charite.de/stellenangeb...
karriere.charite.de
Wissenschaftliche Mitarbeiterin / Wissenschaftlicher Mitarbeiter (d/w/m) Centrum für Schlaganfallforschung Berlin DM.232.24
Teilzeit | 25.12.2024 | Campus Charité Mitte
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BioImaging North America @bioimagingna.bsky.social · 25/11/2024
Happy #MicroscopyMonday! The recordings of the #Virtual #I2K2024 workshops are available now tinyurl.com/VirtualI2K20... Thanks to all who presented! Please re-share! 2022 and 2023 content available too: www.youtube.com/@I2KConference
Virtual I2K Flyer notifying that the Recordings are available on the I2K YouTube channel: https://www.youtube.com/@I2KConference
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Antony Dodd @antdodd.bsky.social · 06/11/2024
Delighted to announce #ERCSyG MicroClock, EUR8.3M programme focused on the B. subtilis #circadian clock - with @evolvedbiofilm.bsky.social @marthamerrow.bsky.social @microclockerc.bsky.social at LMU Munchen, Leiden University and John Innes Centre #chronobiology
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pm-lab @pm-lab.bsky.social · 22/11/2024
I am very pleased that our paper on classifying the risk for myasthenic crisis in #patients with #MyastheniaGravis using #MachineLearning is finally out and published. #Ihaveheardofmyasthenia #MGStrong #LivingWithMG #RareDisease. #openaccess. www.sciencedirect.com/science/arti...
sciencedirect.com
Data-driven explainable machine learning for personalized risk classification of myasthenic crisis
Myasthenic crisis (MC) is a critical progression of Myasthenia gravis (MG), requiring intensive care treatment and invasive therapies. Classifying pat…
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Einstein Foundation Berlin @einsteinberlin.bsky.social · 31/01/2024
Berliner Forschende nutzen Miniaturorgane aus menschlichen Zellen als innovative Alternative zu #Tierversuchen - und ermöglichen so bahnbrechende Einblicke in Krankheitsprozesse & Therapien. Im #JournalALBERT haben wir uns 5 Projekte genauer angesehen: www.einsteinfoundation.de/albert/alber...
Bild: Pablo Castagnola
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pm-lab @pm-lab.bsky.social · 22/11/2024
Another repost from Twitter: Have you wondered how #circadian mechanisms and the time of day affects #stroke risk, outcome, therapy? Is #chronotherapy possible in stroke? I am very excited to share our review on "Stroke in the time of Circadian Medicine" www.ahajournals.org/doi/10.1161/...
ahajournals.org
Stroke in the Time of Circadian Medicine | Circulation Research
Time-of-day significantly influences the severity and incidence of stroke. Evidence has emerged not only for circadian governance over stroke risk factors, but also for important determinants of clini...
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Loan Vulliard @lvulliard.bsky.social · 20/11/2024
One full year to get ready: join us next year in Berlin-Buch if you're into spatial biology, morphology and/or high-content perturbation screens! 🔬💻 #CytoData #Microscopy #ImageBasedProfiling
Poster for the CytoData 2025 event on image-based profiling: Hackathon November 17-19, 2025 and Symposium November 20-21, 2025.
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pm-lab @pm-lab.bsky.social · 22/11/2024
As my first post, I am reposting from Twitter our Phindr3D (slightly rewritten). #BioimageTooloftheDay. Phindr3D is a comprehensive #ShallowLearning framework for automated quantitative phenotyping of #3D #HighContentScreening images. Still valuable in the age of (un)explainable #deeplearning.😉
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