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Carsen Stringer (she/her)

@computingnature.neuromatch.social.ap.brid.gy
2.2K followers 1 following 10 posts

group leader @ HHMIJanelia, thinking about thinking, 🔬#suite2p #cellpose #facemap #rastermap | diversity and open-science for better science | Ⓥ | […] [bridged from neuromatch.social/@computingnature on the fediverse by fed.brid.gy ]

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Carsen Stringer (she/her) @computingnature.neuromatch.social.ap.brid.gy · 15/11/2024
We wrote a review on analysis methods for large-scale neural recordings www.science.org/stoken/author-token… @marius10p #neuroscience 🧠 Anything we missed? Reply w/ your fav method!
large-scale neural recording of 50,000 neurons, showing many diverse activity patterns, and also what the cells look like at various zooms of the maximum projection image of the recording FOV
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Reposted by Carsen Stringer (she/her)
Heidi Li Feldman @heidilifeldman.mastodon.social.ap.brid.gy · 08/11/2024
Today, I felt more ready to look systematically at what the handful of politicians and lawyers who are I deeply respect are saying. I’m sharing the best of what I have found. I don’t agree with every last word, but I agree with much and the rest is worth considering. These are people I would go […]
mastodon.social
Original post on mastodon.social
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Carsen Stringer (she/her) @computingnature.neuromatch.social.ap.brid.gy · 08/11/2024
Laura Grima et al provide new insights into the algorithms mice use when learning to forage in large environments with many potential resources! biorxiv.org/content/10.1101/2024.11…
Large arena with 6 lick ports and a tracking camera along with fiber photometry
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Reposted by Carsen Stringer (she/her)
Beth Cimini 🔬💻📊 @bethcimini.bsky.social · 06/11/2024
If women gave up every time we got evidence people hate us or just don't even consider us people, nothing would ever get done. So take a minute, feel/"honor" the awful feelings, because they're real, but then we're back to our regularly scheduled program of building the least-worst world we can.
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Reposted by Carsen Stringer (she/her)
Beth Cimini 🔬💻📊 @bethcimini.bsky.social · 21/10/2024
Have you ever analyzed a #microscope image before- even just a single one? Please take our survey on progress and places to still improve for image analysis software! #microscopy #imageanalysis #bioimageanalysis forum.image.sc/t/2024-image...
forum.image.sc
2024 Image Analysis Survey
The Center for Open Bioimage Analysis , Bioimaging North America , the Royal Microscopical Society, and the Global Bioimage Analysts’ Society have now released a new and improved edition of our biannu...
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Reposted by Carsen Stringer (she/her)
Beth Cimini 🔬💻📊 @bethcimini.bsky.social · 27/10/2024
Virtual I2K starts TOMORROW, Monday the 28th! 34 FREE sessions, 900+ registrants so far. Learn more about favorite #bioimageanalysis tools or find your next favorite! i2kconference.org/virtual Please also help our community improve by filling out our survey - forum.image.sc/t/2024-image...
A green and magenta fluorescence microscopy image of kelp blades, next to text saying "Virtual I2K2024: Online Tutorials on Image Analysis. October 28-30, 2024. Virtual Conference for beginners to developers. i2kconference.org for more info .
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Reposted by Carsen Stringer (she/her)
jonny (nonvenomous) @jonny.neuromatch.social.ap.brid.gy · 21/10/2024
Alright, #FetchAllReplies , backend edition is open as a PR against upstream masto: github.com/mastodon/mastodon/pull/3… Please roast me for my code and help me get it into a state where we can make this default behavior for masto instances and remove one of the biggest contributors […]
neuromatch.social
Original post on neuromatch.social
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Carsen Stringer (she/her) @computingnature.neuromatch.social.ap.brid.gy · 18/10/2024
Six tips for going public with your lab’s software: www.nature.com/articles/d41586-024-… 1) make time for maintenance 2) simplify installation 3) add a GUI or good CLI 4) good documentation 5) use github/git 6) automated testing Any other tips people have? #SoftwareEngineering
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Carsen Stringer (she/her) @computingnature.neuromatch.social.ap.brid.gy · 18/10/2024
🌟 Exciting news! Applications for HHMI’s #GilliamFellows Program are now open.🚀 The program empowers graduate students & their advisors committed to advancing equity & inclusion in science. Applications due 12/5/24, 2 PM ET. Learn more & apply now: hhmi.news/4dLSXUF #biology […]
neuromatch.social
Original post on neuromatch.social
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Carsen Stringer (she/her) @computingnature.neuromatch.social.ap.brid.gy · 16/10/2024
📢 #Rastermap paper out now, easily explore and visualize your neural recordings 🐭🐒🐟 and ANNs 🤖 nature.com/articles/s41593-024-0178…. Updates from preprint include analyses of primate data and IBL task data. Video tutorial: youtu.be/oQHq7yUWn2k #Neuroscience #MachineLearning
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Carsen Stringer (she/her) @computingnature.neuromatch.social.ap.brid.gy · 01/10/2024
Applications are open for Janelia's jr scientist workshop on mechanistic cognitive #neuroscience 🧠 🐭 🐠 🐒 🪱. Hotel, meals & travel fully covered! Apply by Oct. 8 @ janelia.news/CNW25
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Carsen Stringer (she/her) @computingnature.neuromatch.social.ap.brid.gy · 25/09/2024
Applications are now open for Janelia’s two joint graduate programs with Johns Hopkins: Neuroscience and Cross-Disciplinary Biology (XDBio)! Due Dec 1! 🧠 🔬 🐟 🐀 🤖 www.janelia.org/you-janelia/student…
Two graduate students at Janelia chatting
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Carsen Stringer (she/her) @computingnature.neuromatch.social.ap.brid.gy · 10/09/2024
Discovery of spiking network model parameters constrained by neural recordings, using simulation-based inference www.biorxiv.org/content/10.1101/202… #neuroscience
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