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pm-lab

@pm-lab.bsky.social
1.2K followers 1.1K following 107 posts

#Mitochondria, #MitochondrialDisease, #BrainMetabolism, Stroke, and #CellDeath researcher, Translational Neurologist, Clinician Scientist, Einstein Junior Fellow 🔬🧠🧪👨‍⚕️

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pm-lab @pm-lab.bsky.social · 28/07/2026
At long last... A huge collaborative effort! 🦠🧠🫀🫁🧪🧫🔬 @bihatcharite.bsky.social
thelancet.com
Low reporting quality limits the contribution of human organ models to COVID-19 research: a systematic review
Strengthening community-driven reporting standards and methodological transparency is essential to enable robust evidence synthesis and to fully realise the potential of human organ models in future p...
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pm-lab @pm-lab.bsky.social · 13/07/2026
Excited to share our new paper! We analyzed LRP4-Ab-associated #MyastheniaGravis, revealing a distinct phenotype with a high disease burden & treatment needs. #MGStrong #MGWarrior #LivingWithMG #MyastheniaGravisNews #RareDisease #neuromuscular
doi.org
Phenotype, Severity, and Therapy of Patients With LRP4 Antibody-Associated Myasthenia Gravis in the German Myasthenia Gravis Registry | Neurology
ObjectivesLipoprotein receptor-related protein 4 antibody-positive myasthenia gravis (LRP4-Ab-positive MG) is a rare serologic subgroup with poorly defined clinical phenotype. This study investigated ...
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Steffen Rulands @rulands.bsky.social · 29/04/2026
New paper out in Nature Physics: we show that the embryonic epigenome forms according to universal physical rules. www.nature.com/articles/s41...
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Devine lab @devinelab.bsky.social · 13/03/2026
⚡️We are excited to share a new paper from the lab by @drkhole.bsky.social in @cp-cellrepmethods.bsky.social - suggesting MitoTracker dyes are not a reliable tool for detecting intercellular mitochondrial transfer❗️ www.cell.com/cell-reports...
cell.com
MitoTracker transfers from astrocytes to neurons independently of mitochondria
The mitochondrial dye MitoTracker is commonly used to investigate intercellular mitochondrial transfer (IMT), particularly between astrocytes and neurons. Hole et al. compare MitoTracker with a geneti...
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Ask Erin / Dear Beth @askerindearbeth.bsky.social · 17/02/2026
Ep 25 - from our new AE/DB Bsky account! It's a great one from @erinweisbart.bsky.social - once we've done Cell Painting and gotten our data, how do we interpret the measurements into biology? She and @bethcimini.bsky.social walk you through it. PLUS, in honor of our silver episode, bonuses (1/2)
youtu.be
Interpreting Cell Painting Features: Classic Cell Profiler Features - AskErinDearBeth Episode 25
YouTube video by Ask Erin, Dear Beth
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pm-lab @pm-lab.bsky.social · 27/03/2026
🔬🧪🧠⚡Now also out as a detailed protocol. #brain glucose #metabolism #MRI #NeuroSky ⏬⏬ journals.plos.org/plosone/arti...
journals.plos.org
Measuring cerebral glucose metabolism by chemical exchange-sensitive spin-lock (CESL) MRI of 2-deoxy-D-glucose in rodents
Magnetic resonance imaging (MRI) of glucose metabolism shows significant potential for identifying disease biomarkers and monitoring therapeutic responses in neurological conditions. Here, we present ...
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Steffen Rulands @rulands.bsky.social · 11/02/2026
There is a strange phenomenon in epigenetics where cells use energy to cycle chemical DNA modifications.Nobody knows what such oscillations are good for. We show that chromatin-mediated interactions lead to complex genomic patterns in DNA methylation oscillations.@prxlife.bsky.social bit.ly/4tBS1LJ
bit.ly
Spatiotemporal Patterns of Active Epigenetic Turnover
Chromatin-mediated coupling between cycles of DNA methylation and demethylation can lead to the emergence of phase-locked domains --- regions of locally synchronized turnover activity whose coarsening...
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Fabian Theis @fabiantheis.bsky.social · 05/02/2026
CellRank protocol now in @NatureProtocols! 🎉 @PhilippWeiler's detailed guide shows how to: - Integrate velocity, pseudotime & time points - Infer cell fate probabilities - Analyze lineage priming at scale Great complement to our CellRank 2 paper! 📖 www.nature.com/articles/s41...
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Steffen Rulands @rulands.bsky.social · 05/12/2025
Check out our workshop on mechanisms by which 1D and 3D processes are integrated in the genome: pks.mpg.de/neg26. I am organizing this with Buddhapriya Chakrabarti, Srinjan Basu and Angelo Rosa. #epigenetics #genomics #physics #chromatin #genomeorganization
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pm-lab @pm-lab.bsky.social · 10/07/2025
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pm-lab @pm-lab.bsky.social · 10/07/2025
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pm-lab @pm-lab.bsky.social · 09/07/2025
Research and international collaboration made possible by funding from @einsteinberlin.bsky.social. Thanks to all other funders, particularly #Leducq Foundation, #BMBF, @dfg.de, @volkswagenstiftung.de, #Biowise Foundation.
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pm-lab @pm-lab.bsky.social · 09/07/2025
Great collaboration with @pboehmsturm.bsky.social, @docbeardface.bsky.social, many more sadly all not on here, and with Oxford @ox.ac.uk, @rdm.ox.ac.uk. @neurocure.bsky.social, @berlinualliance.bsky.social
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pm-lab @pm-lab.bsky.social · 09/07/2025
bsky.app/profile/pm-l...
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pm-lab @pm-lab.bsky.social · 09/07/2025
🔬🧪🧠⚡ I am extremely happy to announce that our paper on imaging #brain glucose #metabolism using metabolic #MRI in a 🐀 rat model of ischemic stroke is now published in #JCBFM (journals.sagepub.com/doi/10.1177/...). #OpenAccess #OpenData Check the🧵 🤓 #NeuroSky ⏬⏬
2DG CESL MRI in rat brain after stroke.
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pm-lab @pm-lab.bsky.social · 26/06/2025
Fantastic keynote and great opening for #HIconference2025. Looking forward to two more great conference days. @helmholtzimaging.bsky.social
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pm-lab @pm-lab.bsky.social · 23/06/2025
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pm-lab @pm-lab.bsky.social · 09/06/2025
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pm-lab @pm-lab.bsky.social · 19/04/2025
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pm-lab @pm-lab.bsky.social · 19/04/2025
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Dave Barry @david-j-barry.bsky.social · 17/04/2025
"This symposium explores the power of microscopy imaging as a data-rich resource for quantifying cellular phenotypes, with a strong focus on high-content imaging techniques such as Cell Painting and their applications in drug discovery and basic cell biology" cytodata25.eu-openscreen.eu
CytoData 2025 Event Poster
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Steffen Rulands @rulands.bsky.social · 19/03/2025
New preprint: How do cells measure time? In human development, pluripotent epiblast cells pause for about two weeks before differentiating into more specialised cell types. We show that this timing is controlled by a transcriptional clock that works like an hourglass. www.biorxiv.org/content/10.1...
biorxiv.org
A transcriptional clock of the human pluripotency transition
Developmental timing differs strikingly between mammals. All embryonic and some placental lineages emerge from the pluripotent epiblast in a temporally defined sequence, lasting about two weeks in the...
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pm-lab @pm-lab.bsky.social · 04/04/2025
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pm-lab @pm-lab.bsky.social · 14/03/2025
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Nikhil Garg @nkgarg.bsky.social · 10/03/2025
*Please repost* @sjgreenwood.bsky.social and I just launched a new personalized feed (*please pin*) that we hope will become a "must use" for #academicsky. The feed shows posts about papers filtered by *your* follower network. It's become my default Bluesky experience bsky.app/profile/pape...
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pm-lab @pm-lab.bsky.social · 14/03/2025
Works like a charm. Very impressive. 🤩
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pm-lab @pm-lab.bsky.social · 11/03/2025
I am very pleased to have contributed to this work. Hopefully, it finds wide recognition. @fmp-berlin.de pubs.acs.org/doi/full/10....
pubs.acs.org
Highly Specific Miniaturized Fluorescent Monoacylglycerol Lipase Probes Enable Translational Research
Monoacylglycerol lipase (MAGL) is the pivotal catabolic enzyme responsible for signal termination in the endocannabinoid system. Inhibition of MAGL offers unique advantages over the direct activation of cannabinoid receptors in treating cancer, metabolic disorders, and inflammatory diseases. Although specific fluorescent molecular imaging probes are commonly used for the real-time analysis of the localization and distribution of drug targets in cells, they are almost invariably composed of a linker connecting the pharmacophore with a large fluorophore. In this study, we have developed miniaturized fluorescent probes targeting MAGL by incorporating a highly fluorescent boron-dipyrromethene (BODIPY) moiety into the inhibitor structure that interacts with the MAGL active site. These miniaturized fluorescent probes exhibit favorable drug-like properties such as high solubility and permeability, picomolar potency for MAGL across various species, and high cell selectivity and specificity. A range of translational investigations were conducted, including cell-free fluorescence polarization assays, fluorescence-activated cell sorting analysis, and confocal fluorescence microscopy of live cancer cells, live primary neurons, and human-induced pluripotent stem cell-derived brain organoids. Furthermore, the application of red-shifted analogs or 18F positron emission labeling illustrated the significant versatility and adaptability of the fluorescent ligands in various experimental contexts.
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pm-lab @pm-lab.bsky.social · 10/03/2025
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pm-lab @pm-lab.bsky.social · 10/03/2025
Still time to apply for this PostDoc opportunity 👇👇👇
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pm-lab @pm-lab.bsky.social · 08/03/2025
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pm-lab @pm-lab.bsky.social · 08/03/2025
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pm-lab @pm-lab.bsky.social · 13/02/2025
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pm-lab @pm-lab.bsky.social · 12/02/2025
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pm-lab @pm-lab.bsky.social · 12/02/2025
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mesoSPIM: Clear Images. Big samples. Open source. @mesospim.bsky.social · 20/01/2025
The next-generation open-source "Benchtop" #mesoSPIM light-sheet microscope, with open access to everyone. Find the detailed blueprints on how to build your own, and examples of applications, from neuroscience to astrophysics! link.springer.com/article/10.1...
link.springer.com
Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for cleared samples - Nature Communications
In 2015, we launched the mesoSPIM initiative, an open-source project for making light-sheet microscopy of large cleared tissues more accessible. Meanwhile, the demand for imaging larger samples at hig...
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pm-lab @pm-lab.bsky.social · 07/02/2025
#MedSky Please spread the word or maybe you know someone…: @preibischs.bsky.social @herrsaalfeld.bsky.social @rulands.bsky.social @bifold.berlin @neurocure.bsky.social
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pm-lab @pm-lab.bsky.social · 07/02/2025
🚨 Job Alert 🚨🔬🧪👩‍💻🖥️ Are you interested in #BioimageAnalysis #ComputerVision #AI #ML methods for the #LifeSciences? Do you want to work on #DigitalPathology of tissues, cells, organelles? Check out this #PostDoc opportunity in a collaboration with Jens Rittscher from @oxengsci.bsky.social @ox.ac.uk
karriere.charite.de
Research assistant / Post-doctoral fellow image analysis - Center for Stroke Research DM.16.25
full-time | 21.02.2025 | Campus Charité Mitte
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Paolo Crosetto @paolocrosetto.bsky.social · 23/11/2024
The Economist covered our "Strain on scientific publishing" paper. What is this all about? We collectively churn out more & more papers *per scientist*, an increasing pace, in a rapidly changing publication landscape. Why? How? Want to make sense of this? 🧵 www.economist.com/science-and-...
economist.com
Scientific publishers are producing more papers than ever
Concerns about some of their business models are building
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pm-lab @pm-lab.bsky.social · 06/02/2025
bsky.app/profile/bior... 🤓
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pm-lab @pm-lab.bsky.social · 06/02/2025
Thanks to all the funders, particularly @einsteinberlin.bsky.social for supporting our international collaboration. #Leducq Foundation, #BMBF, @dfg.de @volkswagenstiftung.bsky.social, and more. @neurocure.bsky.social @rdmoxford.bsky.social @ox.ac.uk
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pm-lab @pm-lab.bsky.social · 06/02/2025
Code 👩‍💻 and image data are released alongside the preprint. #OpenData #OpenCode zenodo.org/records/1452...
zenodo.org
Open Data Repository - 2-deoxy-D-glucose chemical exchange-sensitive spin-lock MRI of cerebral metabolism after stroke in the rat
This dataset contains in vivo MRI data of rats after 90 min proximal MCAO
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pm-lab @pm-lab.bsky.social · 06/02/2025
We use Chemical Exchange-sensitive Spin-Lock (CESL)) #MRI of 2-deoxy-glucose to quantify glucose utilization in stroke. We find that the metabolic stroke core is smaller than when quantified based on blood flow imaging. This has been known from PET imaging, and it’s great to replicate this with MRI.
Metabolic MRI image
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pm-lab @pm-lab.bsky.social · 06/02/2025
🚨🚨🚨 #Preprint Alert 🚨🚨🚨 🔬🧪🧠⚡ I am thrilled to share our recent preprint on imaging #brain glucose #metabolism using metabolic #MRI in a rat model of ischemic stroke. Great collaboration with @pboehmsturm.bsky.social @docbeardface.bsky.social and many more sadly all not on here. A brief 🧵 #NeuroSky
doi.org
2-deoxy-D-glucose chemical exchange-sensitive spin-lock MRI of cerebral glucose metabolism after stroke in the rat
Rapid breakdown of cerebral glucose metabolism is a hallmark in stroke pathology. Metabolic activity delineates the penumbra from the infarct core, representing tissue that is potentially salvageable ...
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pm-lab @pm-lab.bsky.social · 06/02/2025
Very cool! 😎 📌
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pm-lab @pm-lab.bsky.social · 06/02/2025
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pm-lab @pm-lab.bsky.social · 05/02/2025
Please add me 👋 🔬 🧠 ⚡ Would love to be included. Thanks! 😎
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pm-lab @pm-lab.bsky.social · 24/01/2025
Please add. Would be great to be included!
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pm-lab @pm-lab.bsky.social · 24/01/2025
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pm-lab @pm-lab.bsky.social · 24/01/2025
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Razvan Borza @rborza.bsky.social · 17/11/2024
⚠️THREAD OF ALL SCIENCE-RELATED STARTER PACKS! ⚠️ 🔄Share to help people finding its topic/field - STRUCTURAL BIOLOGY Structural Biology 1: bsky.app/starter-pack... Structural Biology 2: bsky.app/starter-pack... Crystallography: bsky.app/starter-pack... Synchrotron&CryoEM: bsky.app/starter-pack...
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