Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 15hI have modernized and enhanced the NSF COA generator tool. Results now update dynamically • Published under more than one name? Covered! • Other people share your name? No problem! • You prefer searching by ORCID? Go ahead! Give it a try. Feedback, bug reports, feature requests are MOST welcome! 🧪 04724
Reposted by Gwênlyn Glusman (she/her) ☸️Rupa Immanuel @rupaimmanuel.bsky.social · 17/09/2026Happy to share our latest #preprint that reveals the #new role of how Mtb's adenylate cyclase switch acts as the foundation for its distinct physiology during conditional adaptation. Kudos to the team @nitinbaliga.bsky.social and @isbscience.org 🎉 011
Reposted by Gwênlyn Glusman (she/her) ☸️ISB @isbscience.org · 23/04/2026If you missed this week’s Research Roundtable, the recording is now available. ISB’s @alicekane.bsky.social explores the biology of aging — including frailty, menopause, and what shapes long-term health. Watch here: isbscience.org/news/isb-eve...isbscience.orgHow the Body Ages: Exploring Frailty, Menopause, and the Biology of HealthspanAlice Kane on aging, frailty, and healthspan, highlighting new biomarkers, sex differences, and insights into menopause and women’s health. 033
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 18/12/2025Our recent #CTSjournal paper on the initial public release of the Biomedical Data Translator was selected as Paper of the Month by @ascptclinpharm.bsky.social An open-source, knowledge graph–based reasoning system. www.linkedin.com/feed/update/... ascpt.onlinelibrary.wiley.com/doi/10.1111/... 🧪ascpt.onlinelibrary.wiley.comAnnouncing the Biomedical Data Translator: Initial Public ReleaseThe growing availability of biomedical data offers vast potential to improve human health, but the complexity and lack of integration of these datasets often limit their utility. To address this, the... 151
Reposted by Gwênlyn Glusman (she/her) ☸️Lucia Peixoto @sciencenlucia.bsky.social · 15/11/2025Today I am starting a weekly post titled "Autism: The Evidence". I hope it helps someone fight the colossal wave of misinformation that is drowning us. Part 1: I heard Autism prevalence has gone up. Is that true? If so why? 23316
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 27/10/2025Our MicrobiomeKG paper is finally fully published! A knowledge graph connecting microbes with host health. It's been a joy to mentor and work with Skye Goetz. This is her first paper as first author! Likewise, always great working with Amy Glen. 🧪 www.frontiersin.org/journals/sys... 020
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 07/10/2025We had a lovely celebration today at ISB, for Mary. Beyond the work and the prize, it is worth highlighting that Mary is always friendly, collected, thoughtful, and very humble. Such a delight to see her recognized!! 111
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 12/07/2025"Announcing the Biomedical Data Translator: Initial Public Release" pubmed.ncbi.nlm.nih.gov/40635371/ Translator is the knowledge-graph integration system we're developing to support hypothesis generation by scientists. Funded by NCATS. As I said in the past, best consortium ever. Awesome people. 🧪pubmed.ncbi.nlm.nih.govAnnouncing the Biomedical Data Translator: Initial Public Release - PubMedThe growing availability of biomedical data offers vast potential to improve human health, but the complexity and lack of integration of these datasets often limit their utility. To address this, the ... 075
Reposted by Gwênlyn Glusman (she/her) ☸️euanashley @euanashley.bsky.social · 14/06/2025Atul Butte died yesterday. The world lost a giant. A big bear of a man. With a huge smile. With love for everyone. With energy that could power a room. I loved everything about Atul. I loved how he was always happy. I loved how excited he was about science and helping people. 1419458
Reposted by Gwênlyn Glusman (she/her) ☸️Sean Gibbons 🦠💩 @gibbological.bsky.social · 13/06/2025Interesting new study on emergence and disruption of cooperativity in a denitrifying microbial community, by postdoc in the lab Alex Carr (from his PhD work with Nitin Baliga). academic.oup.com/ismej/articl...academic.oup.comEmergence and disruption of cooperativity in a denitrifying microbial communityAbstract. Anthropogenic perturbations to the nitrogen cycle, primarily through use of synthetic fertilizers, is driving an unprecedented increase in the em 13112
Reposted by Gwênlyn Glusman (she/her) ☸️The Guardian @theguardian.com · 05/06/2025Breakthrough in search for HIV cure leaves researchers ‘overwhelmed’theguardian.comBreakthrough in search for HIV cure leaves researchers ‘overwhelmed’Exclusive: Melbourne team demonstrates way to make the virus visible within white blood cells, paving the way to fully clear it from the body A cure for HIV could be a step closer after researchers found a new way to force the virus out of hiding inside human cells. The virus’s ability to conceal itself inside certain white blood cells has been one of the main challenges for scientists looking for a cure. It means there is a reservoir of the HIV in the body, capable of reactivation, that neither the immune system nor drugs can tackle. Continue reading... 351510545
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 19/05/2025This is superbly interesting. Quite clear evidence of theory of mind at work. 041
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 18/05/2025Youtube offered this to me today, likely because of my love for Hania Rani's music. Büşra Kayıkçı's music is delightful! 010
Reposted by Gwênlyn Glusman (she/her) ☸️Stand Up for Science! @standupforscience.net · 10/05/2025HAPPY 75th, NSF! We’re celebrating this milestone by highlighting some of NSF’s most transformative accomplishments—innovations that have shaped our world and continue to drive progress in health, technology, the environment, and beyond. Read on 🧵(1/11): 8803408
Reposted by Gwênlyn Glusman (she/her) ☸️ISB @isbscience.org · 22/04/2025We are saddened to share the passing of Valerie Logan Hood, beloved wife of ISB Co-founder Dr. Lee Hood. Valerie’s dedication to K-12 education shaped ISB’s education programs & and her influence continues to be felt by students and educators in WA state and beyond. isbscience.org/news/philant...isbscience.orgCelebrating the Life and Legacy of Valerie Logan HoodISB is saddened to share the passing of Valerie Logan Hood, whose lifelong dedication to K-12 education shaped ISB’s education programs. 002
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 23/03/2025Fascinating and important read indeed. I'm sure there are plenty of cultural differences on this topic, too. 010
Reposted by Gwênlyn Glusman (she/her) ☸️Richard Sever @richardsever.bsky.social · 11/03/2025Big news: we are setting up a new non-profit organization to run bioRxiv and medRxiv. It's called openRxiv [no it's not a new preprint server; it's dedicated organization to oversee the servers] openrxiv.org 1/nopenrxiv.orgHomepage - openRxivopenRxiv is an independent non-profit, the new organizational home for bioRxiv and medRxiv, enabling researchers to instantly share groundbreaking findings with the global scientific community. 552558846
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 08/03/2025www.geekwire.com/2025/researc...geekwire.comResearchers, politicians rally for science in Seattle as part of national protest against Trump cutsThe Stand Up for Science rally in Seattle, part of a nationwide effort, filled the mural amphitheater at the Seattle Center. (Photo courtesy of Bryn 010
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 03/03/2025This is indeed a beautiful graphic! 000
Reposted by Gwênlyn Glusman (she/her) ☸️John Skiles Skinner @skiles.blue · 01/03/2025I got laid off today, with the rest of 18F. 18F was an elite federal software shop. We made gov't websites work better, more efficiently for the American people. We saved taxpayers from getting screwed over by contractors. And were fired for it. We made this website to tell our story: 18f.org18f.orgWe're not done yet | 18F 31689271030854
Reposted by Gwênlyn Glusman (she/her) ☸️Alice Kane @alicekane.bsky.social · 28/02/2025Data request! Do you assess frailty index in your aging C57 mouse studies? @dantong-zhu.bsky.social is making new and improved clocks to predict age and lifespan based on frailty data & we aim to validate widely! Reach out if you want to collaborate 🐀👵⏰ Especially if you have female data + lifespan! 013
Reposted by Gwênlyn Glusman (she/her) ☸️Be Kind @bekindman.bsky.social · 24/02/2025As a great darkness falls over the US it becomes more and more important to be the light. Know the bad, but stick to the good Everything changes #metta 021
Reposted by Gwênlyn Glusman (she/her) ☸️ISB @isbscience.org · 15/02/2025🚀 We're Hiring: Contracts Specialist! 🚀 Join @isbscience.org's Legal & Innovation team (Seattle, Hybrid) to manage contracts, NDAs, & licensing for cutting-edge research. 🔹 2+ yrs contracts/paralegal experience required 📌 Apply at isbscience.bamboohr.com/careers/42 Boost or tag a great candidate!isbscience.bamboohr.comContracts SpecialistThe Institute for Systems Biology (ISB) is creating the future of health. ISB scientists make breakthrough discoveries in cancer, health, chronic and infectious disease, and environmental issues. The ... 013
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 12/02/2025Another explainer, for those who prefer video animations. Please amplify, particularly to non-scientists. 🧪 1115
Reposted by Gwênlyn Glusman (she/her) ☸️Stephen Floor @snf.bsky.social · 09/02/2025not paying indirect costs for research is like only paying the players in the Super Bowl. can't have a Super Bowl without coaches, referees, security, janitors, announcers, stadium staff, and a stadium - and you can't have research without supporting people and facilities 171181382
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 09/02/2025A visual for the more visually oriented! What overhead/indirect costs actually pay for. 🧪 0133
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 09/02/2025Great explainer for those not familiar with what indirect costs actually mean and do, in scientific research. 🧪 02915
Reposted by Gwênlyn Glusman (she/her) ☸️ISB @isbscience.org · 03/02/2025🚨 We're Hiring! @isbscience.org is looking for a Health & Safety Specialist to lead lab services operations & oversee health & safety programs in a dynamic research environment. Join us & make an impact! Apply here: isbscience.bamboohr.com/careers/41?s... #Hiring #HealthAndSafety #LabJobsisbscience.bamboohr.comHealth and Safety SpecialistISB is a non-profit biomedical research organization based in Seattle, and focuses on some of the most pressing issues in human health. The Health & Safety Specialist is a Lead role responsible fo... 022
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 04/02/2025Reproducibility of 🧪 scientific results strongly depends on data access. Centralizing content in gov-managed/mandated systems seemed to be the way to go, but now it is clearly a risky model. What are your strategies for preserving access to the crucial data you need to do and share your research? 280
Reposted by Gwênlyn Glusman (she/her) ☸️bioRxiv Bioinfo @biorxiv-bioinfo.bsky.social · 26/01/2025Benchmarking Data Leakage on Link Prediction in Biomedical Knowledge Graph Embeddings www.biorxiv.org/content/10.1101/202… 021
Reposted by Gwênlyn Glusman (she/her) ☸️ISB @isbscience.org · 24/01/2025We are heartbroken by the passing of Ginny Ruffner, a beloved artist and passionate advocate for ISB. Her art inspired us, her advocacy lifted us, and her legacy will live on. Read more: www.seattletimes.com/entertainmen.... Donations can be made to SOLA (Support Old Lady Artists): solaseattle.org. 053
Reposted by Gwênlyn Glusman (she/her) ☸️Quin Rey @quinreystudios.com · 22/01/2025Your self identity is valid. Negativity from voices of fear mongering & hate will never change your courage & authenticity. You are supported, respected & cared about by a community that loves you. Never forget that. I am so glad you are here. 🫶🏼🏳️⚧️🫂 44314
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 19/01/2025One could nitpick about meaning of 'freezing': If I cool water to 27 F, it doesn't actually freeze at 27 F, it does so at 32 F. It will already be frozen by the time it reaches 27 F. But the AI demonstrates its lack of understanding by explicitly stating that the water will still be liquid at 27 F. 010
Reposted by Gwênlyn Glusman (she/her) ☸️Anna Kuchina @annabiosys.bsky.social · 16/01/2025How can single-cell transcriptomics profile phage infection in individual microbial cells? Check out our preprint with Anika Gupta, Norma Morella, Dmitry Sutormin & other authors, in collaboration with Georg Seelig (UW) and Neel Dey (Fred Hutch). www.biorxiv.org/content/10.1...biorxiv.orgCombinatorial phenotypic landscape enables bacterial resistance to phage infectionSuccess of phage therapies is limited by bacterial defenses against phages. While a large variety of anti-phage defense mechanisms has been characterized, how expression of these systems is distribute... 02820
Reposted by Gwênlyn Glusman (she/her) ☸️Alice Kane @alicekane.bsky.social · 02/01/2025Check out the first publication from the Kane lab @isbscience.org! RNAseq analysis of sex differences in aging across tissues - spoiler alert - there are lots of them! bsd.biomedcentral.com/articles/10.... Congratulations and thans to @dantong-zhu.bsky.social, @judywbio.bsky.social & other authors.bsd.biomedcentral.comSex dimorphism and tissue specificity of gene expression changes in aging mice - Biology of Sex DifferencesBackground Aging is a complex process that involves all tissues in an organism and shows sex dimorphism. While transcriptional changes in aging have been well characterized, the majority of studies ha... 22713
Reposted by Gwênlyn Glusman (she/her) ☸️Sean Gibbons 🦠💩 @gibbological.bsky.social · 08/01/2025In our latest preprint, led by Master's student Gechlang Tang, we put forth a modest proposal: why not just use host-derived reads as a normalization factor for estimating absolute bacterial biomass in stool metagenomes? 🦠💩📈 @isbscience.org www.biorxiv.org/content/10.1...biorxiv.orgMetagenomic estimation of absolute bacterial biomass in the mammalian gut through host-derived read normalization.Absolute bacterial biomass estimation in the human gut is crucial for understanding microbiome dynamics and host-microbe interactions. Current methods for quantifying bacterial biomass in stool, such ... 35821
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 05/12/2024Yet another awesome video by Jess of the Shire, this time about the #music on Middle Earth (including that of the Ainur, technically before Arda). All around #Tolkien goodness. I'll only quibble with the choice of caption on the videos, frequently not the main point. www.youtube.com/watch?v=EQl9...youtube.comThe Music of Middle Earth: An (Almost) Complete GuideYouTube video by Jess of the Shire 030
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 04/12/2024Saw this soon after getting off the bus. Made me wonder, again, at the Spanish expression "solo como un hongo"... literally "lonely like a mushroom". #fungifriends 1150
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 27/11/2024Today's cutest forest find. Guessing a chip cherry (Leratiomyces ceres). #fungifriends 0161
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 22/11/2024letting go means this - holding with an open hand still water, flowing #haiku #dhamma #dharma 052
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 22/11/2024glint on forest path windstorm debris all around stern owl greets the night #fungifriends #haiku 0100
Reposted by Gwênlyn Glusman (she/her) ☸️ISB @isbscience.org · 21/11/2024Read ISB's news release here: isbscience.org/news/2024/11...isbscience.orgISB Study Highlights AI’s Potential and Pitfalls in Analyzing Health DataNew peer-reviewed research out of ISB highlights the strengths of large language models in uncovering social determinants of health while underscoring the need for human oversight and improved de-iden... 022
Reposted by Gwênlyn Glusman (she/her) ☸️BWJones @bwjones.bsky.social · 20/11/2024This website worked incredibly well for my NSF COA doc prep. 3134
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 17/11/2024When applying to NSF for funding, each senior personnel has to provide a “Collaborators and Other Affiliations” (COA) form, which can be quite onerous. A couple of years ago I created a tool bit.ly/NSF_COA for automating this, and recently hardened it. I hope it is of use, and feedback is welcome! 🧪bit.lyNSF COA generator 2111243
Gwênlyn Glusman (she/her) ☸️ @gwenlyn.bsky.social · 16/11/2024Preprint is out! We created and integrated knowledge graphs from underlying data, including EHRs, multiomics, and registries on clinical trials and drug approvals. Query via smartAPI. Part of the larger effort for NCATS Biomedical Data Translator, which is BTW the most awesome consortium ever! 000