Sign in

Linda Kachuri

@lindakachuri.bsky.social
689 followers 513 following 24 posts

Assistant Professor @ Stanford Genetic & cancer epidemiology Views my own 🇺🇦🇽🇰🇨🇦

PostsRepliesMedia
Reposted by Linda Kachuri
Science Magazine @science.org · 29/09/2026
On 28 September, a jet-powered drone slammed into the headquarters of the National Academy of Sciences of Ukraine in Kyiv, killing at least two people and destroying a section of the historic building. scim.ag/3TsMg5M
scim.ag
Russian drone kills at least two in Ukraine science academy attack
New underground labs are being built as war rages on
13315
Reposted by Linda Kachuri
Dmitri Petrov @petrovadmitri.bsky.social · 17/09/2026
We are searching for an Assistant Professor in Evolutionary Biology! Looking for colleagues asking fundamental questions relating to evolutionary processes and drivers of evolutionary patterns. If you think it is you, please do apply! And please repost. facultypositions.stanford.edu/jobs/assista...
facultypositions.stanford.edu
Assistant Professor in Evolutionary Biology - Stanford University, California, United States
The Department of Biology at Stanford University seeks applicants for a tenure-track Assistant Professor in Evolutionary Biology. A successful candidate will conduct research that asks fundamental que...
5151191
Reposted by Linda Kachuri
Andrea Ganna @andganna.bsky.social · 17/07/2026
Can we quantify the impact of individual DNA mutations on healthcare costs? In our new preprint we ran the largest GWAS of healthcare costs to date: 1,429,889 individuals, 11 cohorts, 7 countries, across inpatient, outpatient, primary care, and prescription expenditure 💰🧬
172
Reposted by Linda Kachuri
Alicia Martin @genetisaur.bsky.social · 08/07/2026
So excited to see this published! This method was a long time in the making and is now being widely used to balance scale with depth, especially for participants where unbiased sequencing approaches are so much more useful than arrays
21710
Linda Kachuri @lindakachuri.bsky.social · 16/07/2026
📢 #TOPMed e/sQTL atlas is out in @science.org today! Happy to contribute to this amazing team effort and rich resource for the genomics community: 69k cis-eQTL + 35k cis-sQTL across 6 tissues/cell types and diverse ancestries. Still more to discover 😉🧬 www.science.org/doi/10.1126/...
science.org
Cross-cohort analysis of expression and splicing quantitative trait loci in TOPMed
Most genetic variants associated with complex traits are hypothesized to regulate gene expression. To understand the genetics underlying gene expression variability, we characterized 14,324 RNA-sequen...
23515
Reposted by Linda Kachuri
The American Journal of Human Genetics @ajhgnews.bsky.social · 01/07/2026
🧬Online now! 📄 #GWAS and predictors of neonatal blood cell traits in Hispanic newborns 🧑‍🤝‍🧑 @adamdesmith.bsky.social @lindakachuri.bsky.social & co
cell.com
Genome-wide association study and predictors of neonatal blood cell traits in Hispanic newborns
We identified six genetic loci associated with neonatal lymphocyte-related traits through GWAS in 382 Hispanic cord blood samples and found that delivery mode and biological sex shaped immune cell com...
032
Reposted by Linda Kachuri
Jeff Spence @jeffspence.github.io · 22/06/2026
Excited to see @jonj-udd.bsky.social's fantastic work out @genetics-gsa.bsky.social. Selection in _heterozygotes_ is the primary force shaping allele frequencies of loss-of-function mutations in humans, even in genes only associated with purely recessive diseases. 🧪🧬 doi.org/10.1093/gene...
doi.org
Allele Frequencies at Recessive Disease Genes are Mainly Determined by Pleiotropic Effects in Heterozygotes
Abstract. The classic theory of mutation-selection balance predicts the equilibrium frequency of genetic variation under negative selection. The model pred
26744
Reposted by Linda Kachuri
Mykhaylo M. Malakhov @mykmal.xyz · 15/06/2026
I'm excited to share that I have been awarded a postdoctoral fellowship from the @stanford.edu Center for Computational, Evolutionary and Human Genomics (CEHG)! stanfordcehg.wordpress.com/2026/05/29/a...
stanfordcehg.wordpress.com
Announcing the 2026-27 CEHG Fellows
CEHG received a stunning amount of qualified applicants to this year’s fellowship cycle! We will be supporting six PhD students and three postdoctoral scholars across various disciplines this…
141
Reposted by Linda Kachuri
Mike Inouye @mikeinouye.bsky.social · 07/06/2026
Contextualizing the Utility of Polygenic Risk Scores using Absolute Risk Models in Diverse Ancestry Populations www.medrxiv.org/content/10.6... I don't think Nilanjan is on bluesky so cross-posting his preprint (and linkedin summary) here: www.linkedin.com/posts/nilanj...
0144
Reposted by Linda Kachuri
Wajahat Ali @wajali.bsky.social · 19/05/2026
This security guard died protecting children at the Islamic Center of San Diego. If you can help support his family, it would go a long way. www.launchgood.com/v4/campaign/...
launchgood.com
Support family of Amin Abdullah, Islamic Center of San Diego Martyr | LaunchGood | LaunchGood
Amin was the security guard at the Islamic Center of San Diego. Police say his actions kept Monday's attack from being far worse. Remember his legacy with us!
352175975
Reposted by Linda Kachuri
The American Journal of Human Genetics @ajhgnews.bsky.social · 10/03/2026
🧬New today! 📄Inclusion bias affects common variant discovery and replication in a health-system linked biobank 🧑‍🤝‍🧑 @loldeloo.bsky.social @apimplaskar.bsky.social @bpasaniuc.bsky.social & colleagues
cell.com
Inclusion bias affects common variant discovery and replication in a health-system linked biobank
We quantify inclusion bias in a health-system-linked biobank using classification models to distinguish enrolled individuals from the background population. To evaluate its impact on genetic findings ...
0116
Linda Kachuri @lindakachuri.bsky.social · 26/03/2026
An inspiring message of hope and resilience in these dark times. I am so proud to call Karl my friend. He is a true leader and his work and outlook make me feel optimistic about the future of cancer research. @karlsmithbyrne.bsky.social @oxpop.bsky.social
040
Reposted by Linda Kachuri
George Davey Smith @mendelrandom.bsky.social · 17/03/2026
Failure to understand that the fundamental principle of Mendelian randomization (MR) is of gene-environment equivalence contributes to the flood of nonsense MR papers that are appearing; Shah Ebrahim, Gib Hemani and I explain why in this short commentary. journals.plos.org/plosmedicine...
journals.plos.org
Gene-environment equivalence: The fundamental principle of Mendelian randomization
In this Perspective, George Davey Smith and colleagues outline how and why gene-environment equivalence, the fundamental principle of Mendelian Randomization (MR), must be properly applied and critica...
13928
Linda Kachuri @lindakachuri.bsky.social · 18/03/2026
I’m honored and excited to join the Board of Directors! IGES is home to such a vibrant and welcoming scientific community, I look forward to helping it continue to thrive! 💟🧬 Join us for IGES 2026 in beautiful Estérel, QC 🍁 Abstract submission is open until May 30 www.geneticepi.org/2026-annual-...
geneticepi.org
2026 Annual Meeting
0124
Reposted by Linda Kachuri
Daniela Robles-Espinoza @daniela-oaks.bsky.social · 18/02/2026
We are very happy to see our study finally appear online @nature.com! This has been work of nearly 10 years in collaboration with the National Institute of Genome Medicine 🇲🇽, the National Cancer Institute 🇲🇽, the @sangerinstitute.bsky.social and others ⬇️ www.nature.com/articles/s41...
nature.com
Ancestry and somatic profile indicate acral melanoma origin and prognosis - Nature
Analysis of the somatic and transcriptomic profile of 123 acral melanoma samples from Mexican patients helps understand tumour origins and prognosis, and highlights the importance of including samples...
149141
Reposted by Linda Kachuri
UK Biobank @ukbiobank.ac.uk · 10/02/2026
✅ The UK Government has today granted access to half a million UK Biobank participants' coded GP data for health research. This change will dramatically increase the power of UK Biobank's dataset to advance the diagnosis, treatment and management of conditions handled by GPs.
12916
Reposted by Linda Kachuri
Princeton University Press @princetonupress.bsky.social · 03/02/2026
In What We Inherit, Sam Trejo and @daphmarts.bsky.social debate the use of genomic tools and their societal impact. Now available (31 March UK pub). Learn more about this fascinating book: press.princeton.edu/books/hardco... #Biology #ReadUP
What We Inherit: How New Technologies and Old Myths Are Shaping Our Genomic Future by Sam Trejo and Daphne O. Martschenko
096
Reposted by Linda Kachuri
Open Targets @opentargets.org · 27/01/2026
The Perturbation Catalogue is live! 🧬🔎🖥️ It aims to bring genetic perturbation data into one curated, harmonised, and discoverable platform. Take a look! www.ebi.ac.uk/perturbation...
Perturbation Catalogue home page showing key metrics
1115
Reposted by Linda Kachuri
Nik Baya @nbaya.bsky.social · 06/01/2026
Why do some individuals defy their polygenic score? In the largest study of its kind (402k UKB individuals; 7 continuous traits + 3 diseases), we asked: If your phenotype deviates from common-variant polygenic score prediction, what's driving that difference? www.medrxiv.org/content/10.6...
25027
Reposted by Linda Kachuri
Eric Topol @erictopol.bsky.social · 05/12/2025
How do the metabolic waste products get cleared from our brain? And how does this process intersect with the brain's immune system? An exceptional review by @jonykipnis.bsky.social and colleagues cell.com/neuron/fullt...
cell.com
Resolving the mysteries of brain clearance and immune surveillance
This review by Kipnis et al. explores recent advances in brain fluid dynamics, emphasizing CSF flow’s role in waste clearance, the glymphatic and meningeal lymphatic systems, and neuroimmune interacti...
413842
Linda Kachuri @lindakachuri.bsky.social · 18/11/2025
Excited to welcome @nmancuso.bsky.social! Join us tomorrow to learn about cutting edge methods for investigating regulatory genetic effects in diverse cell types and populations! 🧬🤩 @dbdsstanford.bsky.social @stanfordeph.bsky.social
0101
Reposted by Linda Kachuri
Jeff Spence @jeffspence.github.io · 07/11/2025
How do GWAS and rare variant burden tests rank gene signals? In new work @nature.com with @hakha.bsky.social, @jkpritch.bsky.social, and our wonderful coauthors we find that the key factors are what we call Specificity, Length, and Luck! 🧬🧪🧵 www.nature.com/articles/s41...
nature.com
Specificity, length and luck drive gene rankings in association studies - Nature
Genetic association tests prioritize candidate genes based on different criteria.
517274
Reposted by Linda Kachuri
Dr Gareth Hawkes @drghawkes.bsky.social · 10/11/2025
Genomic superstar @chundru.bsky.social taking on fake-news genotypes in >900k individuals. He shows allele-level filtering is rarely suffifient, and makes the brave choice to properly tackle chrX! We’ll be providing our filtered AoU WGS plink pgens for all registered users: watch this space
074
Reposted by Linda Kachuri
Arjun Bhattacharya @arjunbhattac.bsky.social · 09/10/2025
A few programming notes for #ashg25 from trainees in my group @mdanderson.bsky.social + a thread of me being a proud PI. Please drop by these sessions and talk to @taylorhead.bsky.social, @seantbres.bsky.social , @ytchang11.bsky.social, and me in Boston @geneticssociety.bsky.social next week!
Presentations for Taylor Head (Room 205ABC Level 2 at 11:15 am on 10/15), Sean Bresnahan (Room 253ABC Level 2 at 8:45 am), and poster for Yung-Han Chang (Board 1108T, 2:30-4:30 pm on 10/16)
1144
Reposted by Linda Kachuri
Science Magazine @science.org · 21/09/2025
Samples of DNA collected from thousands of Ukrainians are part of a study probing the genetics of type 1 diabetes. scim.ag/4nabr6B
science.org
Amid war, a Ukrainian genomics research program blooms
Inaugural project for new center searches for genes involved in diabetes
16114
Linda Kachuri @lindakachuri.bsky.social · 20/09/2025
Can anyone recommend a good immigration lawyer?
030
Reposted by Linda Kachuri
Andrea Ganna @andganna.bsky.social · 22/08/2025
Happy to see this online! Having an extra sex chromosome really challenge the binary definition of sex based on XX and XY. So it is not only a medical, but also an important societal question.
1205
Reposted by Linda Kachuri
Vijay G. Sankaran @bloodgenes.bsky.social · 15/08/2025
Grateful for this terrific commentary by @tomonroe.bsky.social in @jclinical-invest.bsky.social on our paper that is out in final print format today: www.jci.org/articles/vie... Please check it out: www.jci.org/articles/vie...
2234
Reposted by Linda Kachuri
Michael Epstein @epsteinstatgen.bsky.social · 23/06/2025
Our new AJHG paper is online. We develop a new TWAS tool that uses local-ancestry information to improve power of gene mapping in admixed samples. Lead author Taylor Head (now at MD Anderson) did a phenomenal job spearheading this work!
0197
Reposted by Linda Kachuri
Sasha Gusev @sashagusevposts.bsky.social · 02/08/2025
A final point about trust. Herasight has apparently partnered with Heliospect Genomics, founded by self-described eugenicist Jonathan Anomaly (a member of both companies). Anomaly and Heliospect were profiled last year by Hope Not Hate: investigations.hopenothate.org.uk/superbaby-fa...
2308
Reposted by Linda Kachuri
Andrea Ganna @andganna.bsky.social · 01/06/2025
We have 2-3 group leader positions opening @fimm-uh.bsky.social !! We are looking for outstanding candidates in human genetics and precision medicine. This time we have a focus on population health data science. E.g. AI for EHR/health data        Generous starting package 💰 shorturl.at/FAk6n
jobs.helsinki.fi
FIMM-EMBL Group Leaders in Molecular Medicine
FIMM-EMBL Group Leaders in Molecular Medicine
03845
Reposted by Linda Kachuri
Nicholas Mancuso @nmancuso.bsky.social · 21/07/2025
Super excited to see this out. What started as some math in a grant in 2020, to a student deciding to take this on in 2022, to published in 2025. These things can take time and patience is key!
35717
Linda Kachuri @lindakachuri.bsky.social · 21/06/2025
IDH mutations are some of the most informative prognostic markers for #glioma. Our small, proof-of-concept study shows that #multimodal classifiers that include #polygenic risk scores can improve pre-operative molecular subtyping: www.nature.com/articles/s41... 🧠🧬 @stanford-cancer.bsky.social
nature.com
Integration of MRI radiomics and germline genetics to predict the IDH mutation status of gliomas - npj Precision Oncology
npj Precision Oncology - Integration of MRI radiomics and germline genetics to predict the IDH mutation status of gliomas
080
Reposted by Linda Kachuri
Nature Reviews Genetics @natrevgenet.nature.com · 16/06/2025
New online! Making sense of the polygenicity of complex traits
nature.com
Making sense of the polygenicity of complex traits
Nature Reviews Genetics, Published online: 16 June 2025; doi:10.1038/s41576-025-00866-7Hakhamanesh Mostafavi recalls a landmark paper by Boyle et al. on the omnigenic model, which proposed that complex traits are influenced by thousands of genes across the genome, including many that are only indirectly related to a trait through regulatory networks.
0107
Reposted by Linda Kachuri
Arslan Zaidi @aazaidi.bsky.social · 25/05/2025
Our paper on the theoretical properties of SNP heritability in admixed populations is out in Genetics: academic.oup.com/genetics/adv... with @jinguohuang.bsky.social, @nicole-kleman.bsky.social , Saonli Basu, and Mark Shriver
academic.oup.com
Interpreting SNP heritability in admixed populations
Abstract. SNP heritability (h2snp) is defined as the proportion of phenotypic variance explained by genotyped SNPs and is believed to be a lower bound of h
04023
Reposted by Linda Kachuri
Nicholas Mancuso @nmancuso.bsky.social · 15/05/2025
It's that time of the year again: ASHG Abstracts! ASHG has always provided an excellent avenue to present novel methods in StatGen and GenEpi, get early feedback, and meet your colleagues! Deadline is June 9th, so still plenty of time :D Link below 👇 www.ashg.org/meetings/202...
urldefense.com
Abstracts
Abstract submission for ASHG 2025. We encourage you to submit your latest research on human genetics and genomics for programming at the ASHG 2025 Annual Meeting.
052
Reposted by Linda Kachuri
Haky Im @hakyim.bsky.social · 14/05/2025
Check out our scPrediXcan paper www.cell.com/cell-genomic... Led by the talented @Charles_Zhou12 and supervised by @MengjieChen6 and me, with thanks to many contributors. scPrediXcan integrates deep learning and single cell expression data into a powerful cell type specific TWAS framework.
cell.com
scPrediXcan integrates deep learning methods and single-cell data into a cell-type-specific transcriptome-wide association study framework
Zhou et al. introduce scPrediXcan, a novel transcriptome-wide association study framework that integrates the deep learning-based model ctPred for cell-type-specific expression prediction. Applied to ...
0156
Reposted by Linda Kachuri
Mykhaylo M. Malakhov @mykmal.xyz · 07/05/2025
I'm excited to share our latest work, now out in #PLOSGenetics! If you feel limited by linear models in TWAS or PWAS but don't think you can switch to nonlinear methods due to a lack of individual-level phenotype data, this paper is for you. 🔗 journals.plos.org/plosgenetics... Thread below 👇 (1/6)
195
Reposted by Linda Kachuri
Dr Kat, Epidemiologist @epidemiologistkat.bsky.social · 30/04/2025
Hating on “Big Pharma”? Cool, it’s a $1.6 trillion regulated industry. But hang on…the $6.3 trillion wellness industry sells you mushroom tea, dewormers, crash diets, and alkaline water—no regulations, no oversight. But hey, it’s ‘natural,’ right?
23688262
Reposted by Linda Kachuri
Aoxing Liu @aoxing2.bsky.social · 28/04/2025
3/n Genetic correlation is straightforward but remember HLA - largely impacting T1D & other AIDs - is excluded by LDSC. If genetic correlation is a genome-wide non-HLA measurement, how can we get HLA back into the game? We built a within-sample HLA PGS with weighted ridge classifiers in FinnGen.
161
Reposted by Linda Kachuri
Andrea Ganna @andganna.bsky.social · 18/04/2025
🚨 New paper 🚨 Do known genetic factors for obesity and type 2 diabetes affect weight loss from GLP1-RA (Ozempic) or bariatric surgery? 🔍 10,960 people, 9 biobanks, 6 countries 🧬 Minimal genetic impact on GLP1-RA response 📉 Modest effect after surgery www.nature.com/articles/s41...
nature.com
Association between plausible genetic factors and weight loss from GLP1-RA and bariatric surgery - Nature Medicine
The authors found, after analyzing 10,960 individuals from 9 multiancestry biobanks across 6 countries, that genetic factors previously associated with BMI have limited impact on GLP-1 receptor agonis...
0177
Reposted by Linda Kachuri
Data Bear 🏳️‍🌈 @dataandpolitics.net · 12/04/2025
I started a newsletter. My first post is going to be a deeper dive into insider trading on Wednesday. I’ll be writing about tech, San Francisco, politics, and AI. With kindness. I’d be grateful for any boosts as I’m excited and nervous for this. data-and-politics.ghost.io
data-and-politics.ghost.io
Data and Politics
Data + Politics. San Francisco, Tech, Politics. With Kindness.
410020
Reposted by Linda Kachuri
Chris Buckley @chrisbuckley.bsky.social · 25/03/2025
Accurately describes the phenomenon of Bureaucratic Capture, where a bureaucracy is set up to serve an organization, but everyone ends up serving the bureaucracy instead (not confined to universities, of course)
053
Reposted by Linda Kachuri
Maike Morrison @maikemorrison.bsky.social · 14/03/2025
1/ Hey y'all, I'm excited to share my latest paper, which is out now in PNAS! We introduce FAVA, a statistical framework to measure compositional variability across microbiome samples. If you want to measure variability across a stacked bar plot, FAVA is for you! Paper: doi.org/10.1073/pnas...
5 relative abundance plots arranged to have increasing compositional variability (variability across relative abundance samples, here vertical bars)
520872
Reposted by Linda Kachuri
Gurdeep Pandher of the Yukon @gurdeep.ca · 17/03/2025
Wishing a joyous St. Patrick's Day to everyone celebrating ☘️☘️☘️
461636203
Reposted by Linda Kachuri
Randall Munroe @xkcd.com · 26/02/2025
RNA xkcd.com/3056
154177422542
Reposted by Linda Kachuri
Shai Carmi @shaicarmi.bsky.social · 10/11/2024
Given several new followers here, I'm posting the link to our Slack group "genetic genealogy science". We post and discuss manuscripts on phasing/imputation, IBD, recombination, demographic inference, ancient DNA, ancestry/admixture, etc. All are welcome. join.slack.com/t/geneticgen...
join.slack.com
Slack
0177
Reposted by Linda Kachuri
The Polygenic Score Catalog @pgscatalog.bsky.social · 26/02/2025
Also out today is this multi-ancestry PGS for PSA! 🔗: www.pgscatalog.org/publication/...
063
Linda Kachuri @lindakachuri.bsky.social · 25/02/2025
📢 Thrilled to see this out, an atlas of e/sQTL across multiple tissues and diverse ancestries in 14,324 TOPMed participants: www.medrxiv.org/content/10.1... Grateful to the #TOPMed #Omics WG for giving me an opportunity to learn and contribute to this important work 🧬
medrxiv.org
Cross-cohort analysis of expression and splicing quantitative trait loci in TOPMed
Most genetic variants associated with complex traits and diseases occur in non-coding genomic regions and are hypothesized to regulate gene expression. To understand the genetics underlying gene expre...
13615