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Laura Breimann

@laurabreimann.bsky.social
1.3K followers 1.2K following 37 posts

Genome Organization & Imaging Researcher | Postdoctoral Fellow at Harvard Medical School | Expert in Advanced Imaging, Image Analysis & Chromatin Biology laurabreimann.github.io

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Reposted by Laura Breimann
Florian Jug @florianjug.bsky.social · 08/10/2026
Just in case anyone here vibes with this: docs.google.com/forms/d/e/1F...
docs.google.com
Sign the open letter to Nikon Small World in Motion
The winning video in Nikon's 2026 Small World in Motion competition is captioned 'abnormal beating of airway cilia from a child with primary ciliary dyskinesia'. It has been seen worldwide, including ...
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Stacey Ogden 🦔 @labogden.bsky.social · 07/10/2026
My lab started a monthly Vintage Journal Club where we read and discuss seminal papers in the field that are related to ongoing projects. It's turning out to be really fun to discuss "vintage" work in the context of what we know today. The lab seems to enjoy it too. 🧪 🤓
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Jean-Yves Tinevez @jytinevez.bsky.social · 05/10/2026
We have a position open in our core facility in the @pasteur.fr . Please share it and / or apply! forum.image.sc/t/research-e...
forum.image.sc
Research engineer in Bioimage Analysis. Institut Pasteur, Image Analysis Hub - 2026
Dear all Below is an announcement for a permanent position as a Research Engineer in the Institut Pasteur, Paris. There is a flyer attached at the bottom. We are looking ideally for a Bioimage An...
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Anna-Karin Gustavsson @gustavssonlab.bsky.social · 02/10/2026
Excited that our work on Microfluidics-Enhanced 3D DNA-Based Points Accumulation for Imaging in Nanoscale Topography has been published in ACS Applied Materials & Interfaces. doi.org/10.1021/acsa... @pubs.acs.org #microscopy #nanoscale
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Rob Klose @robklose.bsky.social · 30/09/2026
Come join us April 2027 for the next instalment of the EMBL Chromatin and Epigenetics meeting. Great invited speakers and lots of talks selected from abstracts! It will be a fantastic meeting (despite the egregious nucleosome images...)
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Sholto David @sholtodavid.bsky.social · 27/09/2026
Today I'm posting a new video about a team of ophthalmology researchers in Germany who scribbled on their figures! t.co/X2U6zCw9pn
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taenia @taenia.bsky.social · 25/09/2026
Goooooood morning, pika fans It's September, and you know what that means! That's right, we are Making Hay, we are Perching On Rocks, we are Squeaking
An American Pika carrying a branch across rocky terrain

This is a small brown mammal that looks like an extremely cute cross between a rabbit and a mouse. It has short, round ears, large dark eyes and long whiskers.Am American Pika crouched on a rock at a 3/4 view towards the camera

This is a small brown mammal that looks like an extremely cute cross between a rabbit and a mouse. It has short, round ears, large dark eyes and long whiskers.An American Pika with a mouth full of dried vegetation sitting on a rock

This is a small brown mammal that looks like an extremely cute cross between a rabbit and a mouse. It has short, round ears, large dark eyes and long whiskers.An American Pika perched on a rock and calling

This is a small brown mammal that looks like an extremely cute cross between a rabbit and a mouse. It has short, round ears, large dark eyes and long whiskers.
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Rob Klose @robklose.bsky.social · 25/09/2026
I really enjoyed chatting with Stefan at the recent EMBO transcription and chromatin meeting about some of my thoughts on CpG island biology!
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Laura Breimann @laurabreimann.bsky.social · 24/09/2026
Yes, I loved the talk and the model. I had so many questions and ideas afterward! It would be so cool to visualize the catenations.
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Laura Breimann @laurabreimann.bsky.social · 24/09/2026
Just went to a really cool talk by Madhu Srinivasan@oxfordbiochemistry.bsky.social where he discussed their recent finding that Cohesin alone isn't enough for proper sister segregation. He argues that catenation, protected by Cohesin, allows for proper spindle tension www.biorxiv.org/content/10.6...
A diagram from the paper shows that Cohesin alone is not enough to hold sister chromosomes, but that catenations (protected by Cohesin) allow for the correct spindle force.
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Bart⚓️ @bartgonnissen.bsky.social · 23/09/2026
The Facial Expressions of Tethys by artist Julius von Bismarck. A suspended high-sea buoy that moves in real time. Sensors on a twin buoy out in the Atlantic Ocean send live satellite data to motors inside the museum. This makes the indoor buoy copy the exact, real-time movements of the ocean waves.
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Laura Breimann @laurabreimann.bsky.social · 23/09/2026
How do you deal with that? Do you tell the candidate that you suspect AI or don reply at all? I’ve gotten applications from quite young students and I wonder if they just don’t know it’s not ok? Maybe telling them would be helpful for their career?
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Laura Breimann @laurabreimann.bsky.social · 22/09/2026
The might have also added a scale bar (not sure if that was there before?). This would make the blue structures very small.
A screenshot from the video (from the image competition) featuring a scale bar of 1 um)
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Molecular Cell @cp-molcell.bsky.social · 18/09/2026
HoT auto-blinking probes enable real-time, super-resolution chromatin imaging in live cells and tissues
dlvr.it
HoT auto-blinking probes enable real-time, super-resolution chromatin imaging in live cells and tissues
Wang et al. introduce HoTs, self-blinking DNA probes for live-cell super-resolution chromatin imaging. Compatible with both STORM and MINFLUX microscopy, HoTs capture chromatin organization across live cells, animal tissues, and clinical tumor samples, opening new opportunities for studying genome architecture in health and disease.
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Jeremy Reiter @reitergroup.bsky.social · 18/09/2026
What in the world am I looking at here? @Nikon? www.nikonsmallworld.com/galleries/20...
nikonsmallworld.com
Abnormal beating of airway cilia from a child with Primary Ciliary Dyskinesia (PCD) | 2026 Small World in Motion Competition
Ning Xu - Abnormal beating of airway cilia from a child with Primary Ciliary Dyskinesia (PCD), a genetic disorder affecting respiratory function.
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Sergey Ovchinnikov @sokrypton.org · 14/09/2026
Finally a more intuitaive way to learn pLDDT/pAE? 😎 sokrypton.github.io/protein_figh... (Character idea from @hannes-stark.bsky.social & Alex Waldherr)
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Hauke Hillen @haukehillen.bsky.social · 11/09/2026
Happy to share our new preprint on the structure of the human mitochondrial RNA degradosome, a central player in organellar RNA metabolism! Work led by graduate student @paulafprado.bsky.social in our group. www.biorxiv.org/content/10.6... 🧵 1/9
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Kazuhiro Maeshima @kazu-maeshima.bsky.social · 08/09/2026
Is euchromatin really “open”? 🧬 Using super-resolution imaging🔬 our new study @natgenet.nature.com reveals: Euchromatin forms condensed domains in live cells. Cohesin constrains them and prevents domain mixing for proper transcriptional insulation🚧 🔗 www.nature.com/articles/s41... (1/2)
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Tatjana Tchumatchenko @tatjanat.bsky.social · 10/01/2026
Please spread the word🔊My lab is looking to hire two international postdocs. If you want to do comp neuro, combine machine learning and awesome math to understand neural circuit activity, then come work with us! Bonn is such a cool place for neuroscience now, you don't want to miss out.
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Jennifer Ouellette @jenlucpiquant.bsky.social · 29/07/2026
College lab class ends with 32 people on antibiotics for deadly germ exposure arstechnica.com/health/2026/...
arstechnica.com
College lab class ends with 32 people on antibiotics for deadly germ exposure
Lab students were supposed to ID a mild germ. They all identified a deadly pathogen.
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nellykanata.bsky.social @nellykanata.bsky.social · 28/07/2026
I am very excited to share the work of my PhD with @eddaschulz.bsky.social, now on BioRxiv! 🎉 🧵⬇️ (1/9) How does the transcription↔️chromatin crosstalk ensure monoallelic expression?
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Luca Giorgetti lab @FMI @lucagiorgetti.bsky.social · 28/07/2026
Thank you @natgenet.nature.com for this nice Research Briefing www.nature.com/articles/s41... on our recent paper reporting live-cell measurements of Sox2 promoter bursting kinetics when varying its genomic distance from the SCR enhancer 👉 www.nature.com/articles/s41...
nature.com
The genomic position of an enhancer modulates bursting dynamics of the cognate promoter - Nature Genetics
We show that, in a genomic locus with minimal complexity, the distance between promoter and enhancer modulates the frequency of clustered transcriptional bursts. Thus, besides the nucleotide sequence,...
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Aafke Gros @aafkegros.bsky.social · 24/07/2026
Microscopy Nodes 3.1 is out for Blender 5.2! 🎉 This has cool new features for conditional masking, working with even larger data (regional upscaling), and data manipulation! Watch the new youtube tutorials that explain the features: www.youtube.com/playlist?lis...
A FIB-SEM plankton visualization where the top shows only the volumetric data of the chromosomes, and the bottom a normally sliced region of the cell. A fluorescence microscopy dataset where a region has been reloaded to be much higher resolution
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Ricardo Henriques @henriqueslab.bsky.social · 21/07/2026
🚀🔬 Can cell shape, signal and movement tell us about a cell's future? #DeepLearning studies now predict cell fate from #microscopy. Together w Rita, @mariodelr.bsky.social, @inesmcunha.bsky.social, @juliettegriffie.bsky.social + @guijacquemet.bsky.social👇 www.preprints.org/manuscript/202607.1414/v1
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Stephen Royle @steveroyle.bsky.social · 21/07/2026
A post about how to make microscopy images as accessible as possible. quantixed.org/2026/07/21/c...
quantixed.org
Colorblind II: Microscopy images and colour blindness – quantixed
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Harmit Singh Malik @harmitmalik.bsky.social · 20/07/2026
I wish I did not have to bring up this old tweet from ‘that other place’ every now and again but here we are (again) and here it is…
A reminder: the scientific accomplishments of serial sexual harassers do not make up for the grievous injury caused to science & young scientists over generations (even if this were a simple math argument which... WTF!). This 'genius myth' protects such folks in the first place.
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Kevin Terretaz @kwolbachia.bsky.social · 17/07/2026
New favorite way to color code microscopy data: this is a real 3D confocal image of an unidentified larvae stained for actin (muscles fibers here). Looks like a watercolor painting! #microscopy #ImageJ #FluorescenceFriday #microscopyMonday
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Constantin Pape @cppape.bsky.social · 16/07/2026
Segmenting individual cells in microscopy is much easier these days thanks to foundation models. Can we use these models for other tasks, such as cell classification? We investigate in our latest work, finding big improvements for object and pixel classification compared to classical approaches.
Evaluation of different methods for pixel classification (top) and object classification (bottom) on the LIVECell dataset. Dark green bars show the F1-Score, which measures the classification / segmentation quality (higher is better), light green bars show the runtimes. Five different settings are compared for each task: Ilastik features + random forest (RF), microSAM embeddings + RF, SAM2 embeddings + RF, and uSAM, SAM2 + attentive probing (DeAP and ObAP). microSAM feature perform best for RF based methods, attentive probing outperforms RF based approaches, but at a much higher runtime.
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Laura Breimann @laurabreimann.bsky.social · 15/07/2026
I like Napari! Easy to add functions and has quite a few plugins.
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Sarah G. Swygert @swygert.bsky.social · 14/07/2026
Excited to share the first preprint from my lab! Transcription has been implicated in regulating SMC complex function, but how this works has been unclear. Here, we use a yeast quiescence model to examine how transcription targets condensin.
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Anders Sejr Hansen @andersshansen.bsky.social · 14/07/2026
@mileshuseyin.bsky.social and the lab have put together a comprehensive protocol for genome-wide Micro-C and for Region-Capture Micro-C in @natprot.nature.com : www.nature.com/articles/s41... See also the GitHub for a user-friendly end-to-end computational pipeline: github.com/ahansenlab/M...
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Constantin Pape @cppape.bsky.social · 09/07/2026
Sharing a big update: I started a group at the MPINAT in Göttingen! We will develop AI for analyzing how proteins interact in the cellular environment based on cutting edge imaging. This appointment is in parallel to the university, where I will retain my current group.
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Marija Kundakovic @kundakoviclab.bsky.social · 08/07/2026
Fully packed room with literally hundreds of people for our FENS symposium on 3D genome regulation in the brain. This was an amazing lineup of speakers, too, a star after star, and then the dinner was something else 👌 Feeling so privilaged! ❤️ #FENS2026 w @apombo1.bsky.social @boyanbonev.bsky.social
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Sarah McAnulty, Ph.D. @sarahmackattack.bsky.social · 08/07/2026
It's day 3 of the United States of Science 2026. 28 states are closed out. Most of the big states still on the board. 31 bubbles for Pennsylvania 41 for California 46 for Ohio 86 for Texas 109 for NY 123 for Florida Who's going to help get them finished? Fill a bubble here givebutter.com/USS2026
a map of the united states with a blue west coast, pink middle, purple for northeast, and green southern states. Half of the bubbles are full! Wyoming inexplicably has two gritties in the bubbles
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Christophe 🔬 Leterrier @christlet.bsky.social · 08/07/2026
Are tapes a good option for long-term cold storage of microscopy data? I'm looking at storing ~200 TB with no recurring fee (no cloud) and with as little esoteric server/command line fuss as possible www.ibm.com/fr-fr/produc...
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Laura Breimann @laurabreimann.bsky.social · 08/07/2026
Is it SMLM data? We are hopefully close to posting a compression method for SMLM, in case that’s something that might be interesting to you?
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Anders Sejr Hansen @andersshansen.bsky.social · 30/06/2026
Excited to see James' Genome-wide Absolute Quantification of Looping paper out in @natsmb.nature.com : www.nature.com/articles/s41... This has been in collaboration with @lucagiorgetti.bsky.social @leonidmirny.bsky.social @zechnerlab.bsky.social labs. Brief thread below on some key updates
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Roland Dunbrack 🏳️‍🌈 @rolanddunbrack.bsky.social · 28/06/2026
Yes. I contacted them by email and they are working to fix it with their developer.
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Mark Peifer (He, him) @peiferlabunc.bsky.social · 27/06/2026
Truly bizarre story of how two papers from the 1940s by physics pioneer Max Planck have been "retracted" from Naturwissenschaften, potentially by an algorithm, for anachronistic "plagiarism" issues, leaving the current editor baffled (but it is Springer Nature so.... www.science.org/content/arti...
science.org
Why have papers by one of history’s most famous physicists been retracted?
Springer Nature has removed two studies by Max Planck. A bot may be to blame
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Laura Breimann @laurabreimann.bsky.social · 27/06/2026
The study shows that spreading (monomeric) α‑synuclein accumulates at contact sites between mitochondria, ER, and endo/lysosomes, stiffens these interfaces, and disrupts neuron–astrocyte mitochondrial quality control, which might be an early step in synucleinopathies.
Confocal images of dopaminergic neurons labeled with MitoTracker, αS, and LysoSensor (green), revealing frequent localization of mitochondria-associated αS puncta with endolysosomal compartments. Insets highlight regions containing mitochondria, αS and endolysosomes.
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Laura Breimann @laurabreimann.bsky.social · 27/06/2026
New paper from the Birol lab @mdc-berlin.bsky.social that I’m happy to have contributed image analysis to: “Spreading α-synuclein rewires organelle communication and impairs neuron–astrocyte mitochondrial quality control” doi.org/10.64898/2026.06.19.733342 🧪🔬
doi.org
Spreading α-synuclein rewires organelle communication and impairs neuron–astrocyte mitochondrial quality control
Progressive intercellular spreading of α-synuclein (αS) is implicated in pathology initiation and propagation of synucleinopathies. However, how recipient neurons respond to incoming αS and whether these responses contribute to disease-associated early metabolic events, remains unknown. Here, using extracellular monomeric αS to model the earliest cellular response to spreading, we found that internalized αS accumulates at tri-organelle contact sites linking mitochondria, endoplasmic reticulum, and endo/lysosomal compartments. At these interfaces, αS stabilizes generally dynamic contacts and constrains their remodeling, thereby rewiring organelle communication. These effects require the acidic αS C-terminus and are not recapitulated by intracellular αS overexpression. Proteomic profiling of αS-associated mitochondria identified a contact site-enriched but quality-control-deficient state. Functionally, spreading αS impairs neuron-astrocyte mitochondrial quality control (MQC) by reducing neuronal mitochondria transfer to astrocytes, while enhancing mitochondrial import. Our findings establish organelle contact sites as critical target of spreading αS, through which rewired organelle communication impairs MQC and neuron-astrocyte crosstalk. ### Competing Interest Statement The authors have declared no competing interest.
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Laura Breimann @laurabreimann.bsky.social · 19/06/2026
No, those are just XYZ coordinates and I used this from the package: docs.pyvista.org/examples/00-... We often use Gaussian splatting for visualization.
docs.pyvista.org
Create Point Cloud
Create a pyvista.PolyData object from a point cloud of vertices and scalar arrays for those points. Point clouds are generally constructed in the pyvista.PolyData class and can easily have scalar/v...
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Laura Breimann @laurabreimann.bsky.social · 19/06/2026
Looks interesting, maybe the shadows are a bit too dramatic but definitely something to explore more!
Visualization of Oligostorm data of a part of Chr 19
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Laura Breimann @laurabreimann.bsky.social · 19/06/2026
Oh this looks cool, thanks for sharing! I will give it a try on my data.
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Helena Klara Jambor @helenajambor.bsky.social · 16/06/2026
😎 to have this out! --> stay tuned, this is a series about 📊#dataviz for #science 🧪
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Radio&Nukes @radioandnukes.com · 30/05/2026
🌠 BOOM! Bright meteor over Boston today — flash caught by NOAA GOES lightning sensor, boom recorded by Raspberry Shake! GOES shows stunning white-blue flash w/ purple halo over New England. Waveform from AM.R199D spikes at ~18:11 UTC. #Meteor #Boston
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Peter Ly @peterlylab.bsky.social · 19/05/2026
Excited to share our latest paper! We found that large pieces of the human genome can transfer between cells upon direct contact, endowing recipient cells with heritable phenotypic changes. @cp-cell.bsky.social (1/7) www.cell.com/cell/fulltex...
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Eva de la Serna @sciencedoodles.bsky.social · 04/05/2026
2 wks left to apply to join #BoBiAC2026! This course will teach you how to use Python to segment fluorescence images w/tools like @ilastik-team.bsky.social & CellposeSAM, & even how to measure cell features, neighborhood relationships, & colocalization. No coding experience needed! bobiac.github.io
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Elphege Nora Lab at UCSF @elphegenoralab.bsky.social · 13/05/2026
Why can't we explain enhancer action despite 2 decades of chromosome conformation technologies? 😬 Our new study spearheaded by Leonid Mirny's group points to a flaw in our assumptions, and to a solution from physical principles By @timothyfoldes.bsky.social 💻& @karissalhansen.bsky.social 🧪 🧵👇
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Lucas Farnung @lucas.farnunglab.com · 08/05/2026
The Farnung Lab is looking for postdoctoral researchers interested in understanding mechanisms at the intersection of chromatin, transcription, and replication. Find out more here: www.farnunglab.com
farnunglab.com
Contact — Farnung Lab
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