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ilastik-team.bsky.social

@ilastik-team.bsky.social
1.2K followers 327 following 13 posts

Anna Kreshuk's lab and the team behind ilastik write here about their latest research in machine learning for microscopy. Also, new ilastik features and releases get announced here! @EMBL

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ilastik-team.bsky.social @ilastik-team.bsky.social · 09/09/2026
If you run self-supervised learning on datasets where each individual image or volume is large, you have to keep your batches fairly small. Konstantinos Almpanakis from our lab found a way to train even in batches of 1, he will present it tomorrow at #ECCV2026!
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Stefan Terjung @stefanterjung.bsky.social · 14/04/2026
We are looking for an experienced light microscopy specialist, motivated to support our users in the Advanced Light Microscopy Facility at EMBL Heidelberg. embl.wd103.myworkdayjobs.com/en-US/EMBL/j... -closing date 11 May 2026 @eurobioimaging.bsky.social @globalbioimaging.bsky.social
embl.wd103.myworkdayjobs.com
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Martin Jones @martinjones.bsky.social · 25/03/2026
Dominik Kutra from @ilastik-team.bsky.social presenting the latest updates to #ilastik for #BioImageAnalysis at the @zeiss-microscopy.bsky.social "From 3D Light to 3D Electron Microscopy“ symposium at @crick.ac.uk - very brave live demo with TB scale data! @em-stp.bsky.social #VolumeEM
A male researcher standing on stage in front of a large presentation screen with the text "ALL GOOD!??" showingA male presenter on stage in front of a screen showing electron microscopy image data, with colourful overlays denoting a segmentation
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Crick Image Analysis Team @crick-ia-team.bsky.social · 27/01/2026
We are hosting an #Ilastik workshop on March 27th, led by Dominik Kutra, senior research software engineer @ilastik-team.bsky.social The course is open to students and staff at @crick.ac.uk and partner universities (@ucl.ac.uk, @kingscollegelondon.bsky.social and @imperialcollegeldn.bsky.social)
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ilastik-team.bsky.social @ilastik-team.bsky.social · 18/11/2025
The first meeting was a blast and the second one promises to be even better - if you submit your abstract and join us!
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ilastik-team.bsky.social @ilastik-team.bsky.social · 09/10/2025
Segment large images without tiling artifacts: sharing our work that should have been presented at ICCV in 2 weeks - the brilliant first author Elena can’t go because of visa issues. The paper: arxiv.org/abs/2503.19545 1/🧵
Large images have to be broken into tiles both for training and inference with neural networks. The tile predictions then need to be merged to produce the final volume prediction.
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Wolfgang Huber @wkhuber.bsky.social · 09/09/2025
Join EMBL as a research group leader in AI in biology. EMBL AI is our new initiative aiming to exploit the full potential of ML/AI-based approaches to advance our understanding of the most complex system in the known universe - life on Earth. embl.wd103.myworkdayjobs.com/en-US/EMBL/j... (1/3)
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AI4Life @ai4life.bsky.social · 27/06/2025
The 2nd AI4Life Challenge is live! Calling the AI & bioimaging community to tackle a key microscopy challenge: removing noise while preserving detail. 📦 Paired noisy/clean datasets 📈 Ground-truth evaluation 🧠 DL focus Build, test, compete 👉 ai4life.eurobioimaging.eu/challenge-2/
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AI4Life @ai4life.bsky.social · 30/06/2025
🐾 The BioImage Model Zoo just got a major upgrade! It has been fully redesigned, offering a new backend, model uploader, community curation tools, and integrated browser-based test runs powered by BioEngine. 🧪 Explore now 👉 bioimage.io
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Florian Jug @florianjug.bsky.social · 04/06/2025
Another year, another #BIC Workshop! This year at #ICCV 2025 in Honolulu, 🌺 🏄‍♀️ 🍹 🌼 Check it here: www.bioimagecomputing.com Submission deadline: July 4th Hey, you have a month left to submit your work!!! 👍
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ilastik-team.bsky.social @ilastik-team.bsky.social · 16/05/2025
New stable ilastik version 1.4.1 at www.ilastik.org/download! Release Highlights: - Support for OME-zarr (v0.4) - New workflow - Trainable Domain Adaptation - New object features based on Spherical Harmonics Feature, contributed by @grosoane.bsky.social. - Native support for Apple Silicon
ilastik.org
ilastik - Download
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The Company of Biologists @biologists.bsky.social · 04/04/2025
📆Deadline today: Friday, 4 April. Apply at bit.ly/4aXgFxq #Microscopy #SciSky #ECR
biologists.com
Democratising Microscopy in Latin America: Imaging Across Scales and Regions
Democratising Microscopy in Latin America: Imaging Across Scales and Regions Microscopy is a multidisciplinary field that enables us to observe and understand the otherwise invisible small world aroun...
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AI4Life @ai4life.bsky.social · 12/03/2025
Big news for AI4Life! Our project is a success story by the European Commission! 🇪🇺 The Directorate-General for Research and Innovation (DG RTD) highlights our mission of making AI-powered bioimage analysis accessible to researchers everywhere 🌍 Read more: ai4life.eurobioimaging.eu/ai4life-high...
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ilastik-team.bsky.social @ilastik-team.bsky.social · 13/03/2025
If you have talented students in your team looking for a coding-heavy summer project, let them know that ilastik is participating in Google Summer of Code 2025! We are a sub-org under the Python Software Foundation. Come code with us as a (paid!) open source internship: github.com/btbest/gsoc-...
github.com
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ilastik-team.bsky.social @ilastik-team.bsky.social · 02/02/2025
Look at these beautiful new object features, now available in ilastik! Big thanks to Oane @grosoane.bsky.social for bringing them to all our users!
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ilastik-team.bsky.social @ilastik-team.bsky.social · 15/01/2025
A new format to ask all you ever wanted to ask about ilastik:
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ilastik-team.bsky.social @ilastik-team.bsky.social · 06/01/2025
Hi everyone! Fulfilling our New Year's resolution to finally move away from X, and already finding so many old friends! Stay tuned for our news, everything will be here from now on.
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