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Ieva Drulyte

@ievadr.bsky.social
1.2K followers 352 following 344 posts

Data & AI for Life Sciences @ Databricks | PhD in Structural Biology | Views my own | She/her

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Reposted by Ieva Drulyte
Daniel Hurdiss @danielhurdiss.bsky.social · 21/09/2026
Excited to share that our norovirus NS3 study is now online in Nature Communications! 🎉 These enzymes, found across an entire order of RNA viruses, have long been molecular motors in search of a function. We think we’ve uncovered their role. (🧵) www.nature.com/articles/s41... #virology #cryoEM
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Daniel Hurdiss @danielhurdiss.bsky.social · 06/08/2026
Why does human coronavirus HKU1 target ciliated airway cells, and do its two serotypes activate their spikes in the same way? Building on our 2023 work, we combined #cryoEM, BLI, molecular dynamics and human nasal epithelial cultures to compare serotypes A and B 🧵 www.biorxiv.org/content/10.6...
Scientific image showing how human coronavirus HKU1 may attach to cells in the nose. On the left, a microscope image shows the virus-binding part of the spike protein attaching to the hair-like surface of ciliated airway cells. On the right, a computer model shows the spike protein leaning toward the cell membrane to reach a sugar-containing molecule called GT3. This supports a possible link between sugar recognition and the virus’s preference for ciliated airway cells.
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Daniel Hurdiss @danielhurdiss.bsky.social · 12/07/2026
Reprocessed an old Glacios dataset and pushed this Fab fragment to 3.8 Å resolution! Not a record-breaker by today’s standards, but still pretty satisfying for a C1 particle with only ~48 kDa of ordered mass. #cryoEM
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Daniel Hurdiss @danielhurdiss.bsky.social · 29/06/2026
Just back from #NIDO2026 in Hong Kong! 🇭🇰 It was a pleasure to present our latest work, catch up with colleagues, and see three Utrecht Virology Lab PhD candidates present their work. Thanks to the organisers for a fantastic meeting and EMBO YIP for the financial support. See you in Banff in 2029!
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Daniel Hurdiss @danielhurdiss.bsky.social · 29/05/2026
Honoured to receive the first Sir Dave Stuart Early Career Award today. Dave was my PhD external examiner, making this award, recognising his contributions to structural biology, especially meaningful to me. Thank you to Instruct-ERIC and Thermo Fisher Scientific for championing ECRs.
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Ieva Drulyte @ievadr.bsky.social · 30/05/2026
Thank you again for the invitation @instruct-eric.bsky.social! I really enjoyed the workshop and the discussions throughout the day. Excited to see these conversations and initiatives continuing to grow in structural biology!
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Daniel Hurdiss @danielhurdiss.bsky.social · 18/05/2026
Excited to share our new preprint! Using deep mutational scanning and multivalent engineering, we developed our SARS-CoV-2 spike-targeting macrocyclic peptide into a potent inhibitor that blocks infection in HAE cultures and protects hamsters after intranasal dosing. chemrxiv.org/doi/full/10....
chemrxiv.org
Development of a Multivalent Macrocyclic Peptide that Shows In Vivo Protection Against SARS-CoV-2 Infection Following Intranasal Administration | ChemRxiv
The risk of zoonotic spillover of coronaviruses poses a constant threat to humanity, as recently exemplified by SARS‑CoV-2. During the pandemic, the rapid emergence of immune escape mutations led to a loss of efficacy of both therapeutic and humoral anti‑...
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Tanmay Bharat @tbharat-lab.bsky.social · 15/05/2026
Applications and prospects of cryo-electron tomography in drug discovery and understanding disease Review article by @camilaclemente.bsky.social in our lab www.sciencedirect.com/science/arti...
sciencedirect.com
Applications and prospects of cryo-electron tomography in drug discovery and understanding disease
Cryo-electron tomography (cryo-ET) is emerging as a transformative tool for structural biology. Unlike methods based on purified molecules, cryo-ET en…
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Daniel Hurdiss @danielhurdiss.bsky.social · 07/05/2026
Honoured to receive the 2026 ACS Infectious Diseases Early Career Award alongside Laura Dassama and Patrick Dolan! Grateful for this recognition, and especially grateful to my wonderful colleagues, collaborators, and lab members who made the work possible. axial.acs.org/biological-c...
axial.acs.org
Biological and Medicinal Chemistry 2026 Lectureship and Award Winners | ACS Publications Chemistry Blog
Learn about the 2026 winners of ACS Publications' Biological and Medicinal Chemistry lectureships and awards.
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Dimitry Tegunov @dtegunov.bsky.social · 03/05/2026
We're super excited to share MissAlignment: a new ML-based approach to reference-free tilt series alignment, spearheaded by @martenchaillet.bsky.social. We think it's going to make your cryo-ET life a lot better. Preprint: www.biorxiv.org/content/10.6... Code: github.com/warpem/miss-... 🧶 Thread:
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TJ McCorvie @allostericstate.bsky.social · 05/04/2026
2D classes of the 58 kDa sample collected on the 100 keV Tundra TEM with a Falcon C detector at @nusbf.bsky.social @newcastleuni.bsky.social. Still much work to do to optimise the sample & data collection but its cool to see what a 100 keV TEM is capable of. #cryoEM @recon4imd.bsky.social
2D classes of a 58 kDa particle collected on a 100 kev Tundra electron microscope
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Jan-Hannes Schaefer @jhschaef.bsky.social · 07/04/2026
We identified the maltoside detergent DM as an effective and easy solution to address preferred orientation in cryo-EM. Helped me switch from graphene grids. Special congrats to Maria Rafiq! @landerlab.bsky.social @nanigrotjahn.bsky.social @wisemanlab.bsky.social #cryoEM doi.org/10.64898/202...
Blender Rendering of vitrified HA trimer with DM at the air-water interface
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Daniel Hurdiss @danielhurdiss.bsky.social · 11/04/2026
For a plain-language overview of our work, see this lay summary courtesy of Kudos: www.growkudos.com/publications...
growkudos.com
Shapeshifting spike proteins help coronaviruses infect whales and dolphins
Coronaviruses use spike proteins to enter cells. This study shows these spikes can change shape, helping the viruses adapt to new hosts, including whales and dolphins. Understanding this flexibility may help predict and prevent future cross-species infections.
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Daniel Hurdiss @danielhurdiss.bsky.social · 09/04/2026
Our paper describing the #cryoEM structures of unusual spike proteins from marine mammal–infecting gammacoronaviruses is now published in PLOS Pathogens! 🐬 journals.plos.org/plospathogen...
journals.plos.org
Cetacean coronavirus spikes highlight S glycoprotein structural plasticity
Author summary Coronaviruses are well known for their ability to jump between species, a process driven mainly by the spike protein on their surface. In this study, we examined spike proteins from coronaviruses found in marine mammals (whales and dolphins) to better understand how these viruses evolve and interact with their hosts. Using structural biology and mass spectrometry, we discovered several unusual features of the cetacean spike proteins. These spikes contain an extra domain within their receptor-binding region that resembles cupin proteins, assemble into trimers in a novel way that hides the receptor-binding domains, and show clusters of sugars (O-linked glycans) near the sites thought to interact with host receptors. These distinctive features suggest that cetacean coronaviruses may use a different entry mechanism, in which the extra domain acts as a switch to reveal the hidden receptor-binding regions. Such a mechanism could affect which species these viruses can infect, how easily they cross species barriers, and how they evade the immune system. Our findings emphasize the structural diversity and modularity of coronavirus spike proteins, highlight the unique adaptations of coronaviruses in marine mammals, and provide insight into their potential to give rise to new diseases in other species.
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Basil Greber @bjgreber.bsky.social · 27/03/2026
Have a look at our latest results on #CDK regulation, just posted as a pre-print! This study was spearheaded by PhD student Amy McGeoch. Amy has determined the #cryoEM structure of the CDK11-cyclin L-SAP30B complex, an important regulator of #spliceosome activation. www.biorxiv.org/content/10.6...
Depictions of the structure of CDK11-cyclin L-SAP30BP. Four cryo-EM densities are shown at the top, two molecules models at the bottom. CDK11 is green, cyclin L is purple, and SAP30BP is yellow.
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Instruct-ERIC @instruct-eric.bsky.social · 28/03/2026
@embo.org Practical Course: Advances in cryo-electron microscopy and 3D image processing 📅 17-25 August 2026 📍 @embl.org Hamburg 📝 Registration Open| Deadline: 11 May 2026 🔗 instruct-eric.org/events/embo-... #cryoEM #Training
instruct-eric.org
EMBO Practical Course: Advances in cryo-electron microscopy and 3D image processing
<p>We are delighted to announce the 2026 EMBO Practice Course on “<a href="https://www.embl.org/about/info/course-and-conference-office/events/cry26-01/#vf-tabs__section-dtc24-01" target="_blank"…
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Nature Reviews Molecular Cell Biology @natrevmcb.nature.com · 26/03/2026
New Online! Overcoming the challenge of preferred particle orientation in cryo-EM
dlvr.it
Overcoming the challenge of preferred particle orientation in cryo-EM
Nature Reviews Molecular Cell Biology, Published online: 26 March 2026; doi:10.1038/s41580-026-00962-4Yang and Liu discuss strategies that help address particle orientation bias in cryogenic electron microscopy (cryo-EM), and offer practical advice to tackle it.
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Daniel Hurdiss @danielhurdiss.bsky.social · 27/03/2026
The newly established NeCEN Utrecht is looking for a #cryoEM scientist! www.uu.nl/en/organisat... Work with a new Krios 5 + pFIB and support cutting-edge life science research. 📍 Utrecht | 🗓 Apply by 30 April Please share with your network!
uu.nl
Cryo-electron microscopy scientist
Join our team to contribute to the operation and innovation of state-of-the-art cryo-electron microscopes and empower groundbreaking research.
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Jakob Farnung @jakobfarnung.bsky.social · 18/03/2026
The E3 ubiquitin ligase mechanism specifying target-directed microRNA degradation (TDMD) is now published! 🎉🍾 We, @bartellab.bsky.social and Schulman lab, describe how 2-RNA factors control protein degradation by recruiting an E3 ligase. @mpibiochem.bsky.social www.nature.com/articles/s41...
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Leah Lavery @helloleahlavery.bsky.social · 18/03/2026
Cryo-EM success starts before the microscope. Join us @royalmicrosoc.bsky.social for a free Cryo-EM SPA mini-course (1 of 3) on sample prep. Learn purification, grid prep & screening tips + live Q&A. 🗓️ Apr 14 Register once to attend all 3 - Sample Prep, Collection, Processing 👉 ter.li/pksdqb
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Daniel Hurdiss @danielhurdiss.bsky.social · 02/03/2026
Excited to welcome @tejashyamk.bsky.social to the ERC starting grant team, as he starts his PhD! Teja joins us from @sc-lab.bsky.social, where he built a solid foundation in biochemistry & #cryoEM 🔬 He’ll be uncovering new insights into norovirus replication and assembly. Exciting science ahead!
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CryoCloud @cryocloudio.bsky.social · 26/02/2026
February Map of the Month: Aca2–RNA We reprocessed EMPIAR-11918 and achieved 2.76 Å in 50.5 compute hours. Sub-3 Å at ~40 kDa is a strong example of what modern cryo-EM workflows (and RELION with Blush) can deliver for small targets. 📧 hi@cryocloud.io #CryoEM #CryoCloud
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cryoEM papers @cryoempapers.bsky.social · 18/02/2026
Structural insights into Cas9-mediated prespacer selection in CRISPR-Cas adaptation pubmed.ncbi.nlm.nih.gov/41702403/ #cryoEM
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Ieva Drulyte @ievadr.bsky.social · 04/12/2025
Not every day your work helps protect baby elephants 🐘💙 Super proud to have contributed to the cryo-EM part of this project - it also happens to be my 20th publication, which makes it feel extra special ☺️
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Daniel Hurdiss @danielhurdiss.bsky.social · 02/12/2025
Honoured to be selected as one of this year’s EMBO Young Investigators! Grateful to my team and colleagues for all their support, and excited about the opportunities this will create for my group and for our work in structural virology. www.embo.org/press-releas...
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Ieva Drulyte @ievadr.bsky.social · 24/11/2025
🌟 WeINSPIREBio is hosting its first event! On Dec 4, we’re running a webinar: Structures of Success: Career Journeys of Women in Structural Biology If you work in SB, drug discovery, or just like hearing career stories from brilliant people, join us! And please share 🙏🏼 lnkd.in/ewjD5WPt #cryoEM
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Ieva Drulyte @ievadr.bsky.social · 05/11/2025
Heading to #PSDI2025 in Basel! Excited for good science, great discussions and familiar faces. Come say hi or book a chat with us!
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Daniel Hurdiss @danielhurdiss.bsky.social · 03/11/2025
Thrilled, and admittedly relieved, to see this major investment in Dutch #cryoEM become reality! 🇳🇱🔬 Honoured to be a co-applicant on this national initiative and very excited for the opportunity to advance our work in cellular structural virology! 🦠 www.uu.nl/en/news/33-m...
uu.nl
33 million euro investment for national electron microscope facility EMPower
A major new national facility for electron microscopy, called EMPower, has been awarded to a consortium of Dutch universities and medical centers. EMPower aims to pave the way for major discoveries im...
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 29/10/2025
Celebrate #NationalCatDay with the cats of RCSB PDB!
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Daniel Hurdiss @danielhurdiss.bsky.social · 12/10/2025
😬
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TJ McCorvie @allostericstate.bsky.social · 12/10/2025
Yikes! In this paper the AlphaFold model of human plasminogen (PDB-8uq6) has been refined into noise (EMD-42462) using Phenix & ISOLDE. For some reason the authors even interpret side-chain interactions: #cryoEM
Image from the EMD entry EMD-42462 for human plasminogen bound to streptococcal surface enolase. Projections of the map are shown demonstrating no protein features and radial streaks due to overfitting. EMD-424262 and PDB-8UQ6 opened in ChimeraX. Though the map is stated to be of Human Plasminogen bound to streptococcal surface enolase the authors have modelled only plasminogen in their PDB. The map shows radial streak at the surface indicative of overfitting and no clear density in the centre of the map corresponds to the model.Figure 5 from the paper describing side chain interactions of human plasminogen from the PDB 8uq6.Image showing the model to map FSC curve from Phenix which is the software used by the authors to real space refine their PDB into their cryo-EM map. The model to map FSC curve is a flat line showing no correlation exists between the cryo-EM map EMD-42462 and the PDB 8uq6.
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Kenneth Ehses @denkenny.bsky.social · 08/10/2025
✨Excited that the main project of my PhD is now available as a pre-print on #bioRxiv Here, we used #CryoET to visualise mitochondrial proteostatic stress and together with SPA #CryoEM shed light into the functional cycle of the Hsp60:10 chaperone system. #TeamTomo 🔗 www.biorxiv.org/content/10.1...
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Goran Bajic @gogo-science.bsky.social · 10/10/2025
Read the latest from us here: www.science.org/doi/10.1126/... #antibody #cryoEM
science.org
Germinal center–mediated broadening of B cell responses to SARS-CoV-2 booster immunization
SARS-CoV-2 variant booster vaccination broadens human B cell responses through the germinal center reaction.
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Oli Clarke @olibclarke.bsky.social · 26/09/2025
Initial attempt at replicating in relion (parameters in next post). This is for Aca2-RNA, using a 100k subset of the 2D-classified particles (no prior 3D cleanup). A 1-class ab initio in relion, then local refinement in relion (1.8deg searches+blush) gives a nominally 3.3Å map; 3.5 Å w/out blush.
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CryoCloud @cryocloudio.bsky.social · 26/09/2025
📣 Live from the Dutch Structural Biology Meeting in Delft! Robert (@riborob.bsky.social) is presenting our CryoCloud poster on accelerating #cryoEM workflows. We’re also sponsoring the Poster Prize 🧦🎉 Big thanks to Arjen Jakobi (@cryotud.bsky.social) for organising. Excited for today’s discussions!
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CryoCloud @cryocloudio.bsky.social · 24/09/2025
September Map of the Month: Small Data, Big Insights ⚡️ From just 233 movies, CryoCloud delivered a 3.2 Å SARS-CoV-2 spike map in 3.5 h. Fast and efficient #cryoEM, exactly what vaccine design teams need when screening dozens of antigen variants per day. 📬 DM or hi@cryocloud.io for more info!
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Patrick van der Wel @pcavanderwel.bsky.social · 18/09/2025
Coming up next week: the third Dutch Structural Biology meeting! Now in Delft, on Sept 26. See program here: nvbmb.kncv.nl/biology-2025 with #teamtomo #cryoEM #nmrchat simulations and more (looks like) Organized by the #NVBMB (associated with KNCV)
nvbmb.kncv.nl
Dutch Structural Biology Meeting 2025 - NVBMB
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Ieva Drulyte @ievadr.bsky.social · 19/09/2025
So happy to have you on board, @jbrwhite.bsky.social!
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Ieva Drulyte @ievadr.bsky.social · 18/09/2025
A few snaps from @cryocloudio.bsky.social retreat in the Belgian Ardennes 📸🌿 We mixed focused work sessions with walks and shared meals, late-night Jenga battles, and plenty of time socialising. We even spotted deer in the garden 🦌 And yes, we also launched our own #cryoEM socks!
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CryoCloud @cryocloudio.bsky.social · 15/09/2025
The CryoCloud team just returned from a retreat in the Belgian Ardennes 🌿 For the first time, all 11 of us met in person, with colleagues from 6 countries. We had work sessions, walks, meals, spotted deer 🦌 … and launched our first edition of CryoCloud #cryoEM socks! 🚀
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CryoCloud @cryocloudio.bsky.social · 21/08/2025
August Map of the Month: Epitope Mapping edition! We reprocessed EMD-19016 and got a 2.7 Å map of PDCoV RBD in complex with two neutralising Fabs ✨ 📊 4,736 movies ⚡️ 35.5 h cloud compute 🔬 2.7 Å map from 120k particles (0.3 Å better than published) 📬 DM or hi@cryocloud.io for more info! #CryoEM
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Bjørn Panyella Pedersen @bjornppedersen.bsky.social · 13/08/2025
Best thing is to come back from ⛰️vacation☀️ to find a manuscript has metamorphosed into a published paper, so.. 🚀 Check out our paper on hormone import⏬ into plant cells in @natplants.nature.com 🌱👇 www.nature.com/articles/s41...
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Sjors Scheres @sjorsscheres.bsky.social · 12/08/2025
Sofia Lövestam's vault structure is now online in Structure @cellpress.bsky.social. 🥳 How beautifully explorative is #cryoEM! We never planned to do this. The vaults just came down with #amyloids from human brain tissue, and Sofia decided to have a closer look. www.cell.com/structure/fu...
cell.com
Cryo-EM structure of the vault from human brain reveals symmetry mismatch at its caps
Lövestam and Scheres present a cryo-EM structure of vault particles, found during tau filament extraction from progressive supranuclear palsy (PSP) brain tissue. They reveal a symmetry shift at the va...
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Astbury Biostructure Laboratory @astbury-bsl.bsky.social · 11/08/2025
🚨 We’re hiring! 🚨 We’re looking for a Correlative Imaging Scientist to join our EM team at ABSL! You will be developing and supporting cryo-EM & cryo-CLEM workflows across multiple imaging platforms (FIB-SEM, cryo-confocal, cryo-EM). Any questions? Get in touch! jobs.leeds.ac.uk/Vacancy.aspx...
jobs.leeds.ac.uk
Job Opportunity at University of Leeds: Correlative Imaging Scientist
Are you a creative postdoctoral-scientist keen to explore novel in-situ biology with cryogenic electron tomography? Do you have a background in imaging technologies and/or image processing?We are look...
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SCIENMAG @scienmag.bsky.social · 08/08/2025
Cryo-EM Structures Uncover Diverse L and P Protein Interactions in Nipah Virus Polymerase Among Paramyxoviruses In a groundbreaking advance that significantly deepens our understanding of viral replication machinery, researchers have unveiled high-resolution cryo-electron microscopy (cryo-EM)…
scienmag.com
Cryo-EM Structures Uncover Diverse L and P Protein Interactions in Nipah Virus Polymerase Among Paramyxoviruses
In a groundbreaking advance that significantly deepens our understanding of viral replication machinery, researchers have unveiled high-resolution cryo-electron microscopy (cryo-EM) structures of the Nipah virus (NiV) polymerase complex. This detailed structural insight opens new avenues for the design of antiviral agents targeting a highly pathogenic zoonotic virus responsible for severe and often fatal human infections. Nipah virus, an emergent member of the Paramyxoviridae family, poses a persistent public health threat due to its zoonotic nature and the absence of approved therapeutics.
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Brett Collins @brettcollins.bsky.social · 06/08/2025
Not my area at all, but how cool are these cryoEM structures of purely RNA-based assemblies! www.nature.com/articles/s41...
High resolution CryoEM maps of RNA assemblies
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TJ McCorvie @allostericstate.bsky.social · 07/08/2025
Nice cover showing cryo-EM derived structures of p53 binding to nucleosomes. Great work from the Thoma lab: www.cell.com/molecular-ce...
cell.com
Nucleosomes specify co-factor access to p53
Chakraborty, Sandate, et al. report that chromatin-bound p53 interacts with deubiquitinating enzyme USP7 but not with the E3 ubiquitin ligase E6AP-E6, despite both co-factors being associated with the...
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CryoCloud @cryocloudio.bsky.social · 06/08/2025
🔐 Cloud Security Part 2 In this second post of our security FAQ series, we are digging into what happens behind the scenes to keep your data safe every single day. ➡️ Click through to learn more about how we manage access, monitor activity, and keep your data safe. #CloudSecurity #CryoEM
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Marcel Dickmanns | 🌿❄️🔬 @madic.bsky.social · 26/07/2025
New preprint: In situ Architecture of #Plasmodesmata. Using #cryoET, #AlphaFold & proteomics, we uncover the native organization of plant intercellular nanopores. 🔗 doi.org/10.1101/2025... 🧪🧵1/n #teamtomo #PlantScience #Physcomitrium #Arabidopsis #cryoEM
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Shicheng Guo @shihcheng.bsky.social · 03/08/2025
Discover the cryo-EM structure of honey bee vitellogenin, revealing insights into its roles in immunity, antioxidant defense, behavior, & longevity. PMID:40593495, Nat Commun 2025, @NatureComms doi.org/10.1038/s41467-025-58575-y #Medsky #Pharmsky #RNA #ASHG #ESHG 🧪
doi.org
Cryo-EM structure of native honey bee vitellogenin | Nature Communications
Vitellogenin (Vg) is the main yolk precursor lipoprotein in almost all egg-laying animals. In addition, along its evolutionary history, Vg has developed a range of new functions in different taxa. In the honey bee, Vg has functions related to immunity, antioxidant protection, social behavior and longevity. However, the molecular mechanisms underlying Vg functionalities are still poorly understood. Here, we report the cryo-EM structure of full-length honey bee Vg, one-step purified directly from hemolymph. The structure provides structural insights into the overall domain architecture, including the lipid binding cavity and the previously uncharacterized von Willebrand factor type D domain. A domain of unknown function has been identified as a C-terminal cystine knot domain based on structural homology. Information about post-translational modifications, cleavage products, metal and lipid binding allow an improved understanding of the mechanisms underlying the range of Vg functionalitie
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