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Sam Hobbs

@hobbslabutah.bsky.social
181 followers 163 following 18 posts

Assistant Professor at University of Utah studying host-virus interactions hobbs.biochem.utah.edu

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Reposted by Sam Hobbs
bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 01/10/2026
Oysters from five continents harbour a vast array of previously unknown RNA viruses, including many putative viruses of vertebrates www.biorxiv.org/content/10.64898/20…
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Reposted by Sam Hobbs
Tominaga K. (tomiken) @pacyc184.bsky.social · 25/09/2026
AlphaFold 'goes viral': database adds protein complexes of common viruses | Nature
nature.com
AlphaFold 'goes viral': database adds protein complexes of common viruses
AI predictions could help with pandemic preparedness, but they will need experimental confirmation.
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Reposted by Sam Hobbs
BK. Titanji @boghuma.bsky.social · 24/09/2026
"I’m saying that I would personally mouth-pipette a solution of pure chloroform right now, today, in front of God and the NIH Director and the entire Office of Research Safety, if it meant a young scientist in my department could get a payline above 20%." substack.com/home/post/p-...
substack.com
Opinion: I Miss When The NIH Payline Was 40% And We All Mouth-Pipetted Phenol
By Dr. Douglas R. Waverly, Professor Emeritus of Biochemistry, Yale University
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Anthropic @anthropic.extwitter.link · 23/09/2026
Claude has discovered a previously unknown enzyme system hidden in the DNA of bacteriophages. Beside the enzyme’s gene sits a long array of repeating DNA—a structure that looks somewhat similar to CRISPR. We don’t yet understand what this system does, but only a handful of known systems share it...
anthropic.com
Claude discovers a novel enzyme system with CRISPR-like repeats
Anthropic is an AI safety and research company that's working to build reliable, interpretable, and steerable AI systems.
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Malcolm White @mfwhite2.bsky.social · 21/09/2026
New preprint from PhD student Yu Sun. TSR1 is a TIR effector specialised for CRISPR defence. It is an obligate dimer activated by cA3 and degrades its own activator using a ring nuclease domain. Perhaps the first confirmed dimeric TIR effector? www.biorxiv.org/content/10.6...
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Aaron Quinlan (he/him) @aaronquinlan.bsky.social · 28/08/2026
I am delighted to announce that The Department of Human Genetics at the University of Utah is continuing a multi-year recruiting initiative for multiple tenure-track faculty positions at the rank of Assistant Professor. Please share and consider applying! utah.peopleadmin.com/postings/208...
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Mart Krupovic @mkrupovic.bsky.social · 26/08/2026
Check out our paper on ESCRTs in large DNA viruses. Most enveloped viruses use the host #ESCRT for envelopment, but only mirusviruses and nucleocytoviricots encode it! Congrats @sonaida.bsky.social, @tomdelmont.bsky.social, Ulysse Guyet & Eugene Koonin. @pasteur.fr www.nature.com/articles/s41...
nature.com
Large eukaryotic DNA viruses encode ESCRT machinery for membrane remodelling - Nature Microbiology
A genomic screen reveals homologues of ESCRT components in mirusviruses that infect unicellular aquatic eukaryotes.
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Tominaga K. (tomiken) @pacyc184.bsky.social · 14/08/2026
Genomic catalogue of giant viruses reveals expanded diversity and functional potential | Nature Microbiology
nature.com
Genomic catalogue of giant viruses reveals expanded diversity and functional potential - Nature Microbiology
This curated genome-resolved, metagenomic resource expands the known diversity of Nucleocytoviricota and Mirusviricota lineages.
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Reposted by Sam Hobbs
Tominaga K. (tomiken) @pacyc184.bsky.social · 14/08/2026
Phage-encoded contingency loci enable bet-hedging against host defence mechanisms | Nature Microbiology
nature.com
Phage-encoded contingency loci enable bet-hedging against host defence mechanisms - Nature Microbiology
Diverse E. coli phage genomes have hypermutable DNA regions that promote reversible frameshift mutations through DNA polymerase slippage, generating population heterogeneity that enables host exploitation.
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Jason Nomburg @jnoms.bsky.social · 22/07/2026
Happy to share the first preprint out of the Nomburg lab! Many aspects of cellular immunity are shared across the tree of life. Here, we show that some of these conserved aspects of cellular immunity are mirrored by conserved effectors of immune antagonism. Thread below! 1/15
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Alexey Amunts @amunts.bsky.social · 04/07/2026
RNA can build. A short RNA self-assembles into a 60-subunit icosahedral cage like a viral capsid, but made entirely of RNA. The striking preprint also reveals a 57-nt RNA filament at ~2.7 Å. Congratulations, Lin Huang and colleagues! www.biorxiv.org/content/10.6...
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Pedro Leão @pedroleao.bsky.social · 05/06/2026
ArchaeaHQ brings: • 21.6k+ genomes across all 4 kingdoms (Asgard, DPANN, TACK, Euryarchaeota) • High quality: ≥70% completeness, ≤10% contamination • 74.8% MAGs & 25.2% isolates • Environmental & geographic metadata included! Data: doi.org/10.6084/m9.f... Code: github.com/Pedrolleao/g... (2/2)
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Waggoner Lab @labwaggoner.bsky.social · 17/06/2026
A CRISPR knockout mouse library for functional genomics in influenza research @cellcellpress.bsky.social www.cell.com/cell/fulltex...
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 10/06/2026
Non-cyclic dinucleotide STING agonists abrogate MPXV infection www.biorxiv.org/content/10.64898/20…
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Roland Dunbrack 🏳️‍🌈 @rolanddunbrack.bsky.social · 07/06/2026
STOP using ipTM for #AlphaFold PPI screens. * Artificially LOW when both full-length proteins have irrelevant, non-binding IDRs/domains. * If one protein is folded & other contains irrelevant IDRs or domains, the score is too HIGH bc of d0. * Use ipSAE or LIS. www.biorxiv.org/content/10.1...
ipSAE vs ipTM for sorting true interactors from non-interactors. ipSAE is better at separating them.Post from "AF Cache: Efficient Pipeline for Running AlphaFold for High-Throughput Protein-Protein Interaction Prediction". Various scores on p53/mdm2 interaction.AlphaFOld ipTM score goes up when extra disorder is added to ONE proten. It goes way down when added to both proteins. Example of KRAS with RAF1 RBD.
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Miguel López Rivera @riveralopz.bsky.social · 29/05/2026
(1/6) Thrilled to share this story! In our preprint from my PhD in the @kranzuschlab.bsky.social, with help from the Hatfull lab and @soreklab.bsky.social, we discover RyDEP, a phage-encoded RyR-domain glycosidase that allows phages to evade Thoeris defense. Highlights below! doi.org/10.64898/202...
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Osterman Ilya @ostermanilya.bsky.social · 28/05/2026
🚨After 4 fantastic years in the Sorek lab @soreklab.bsky.social, I’ll be starting my own group at EMBL @embl.org bl.org Hamburg. www.embl.org/groups/oster... Metabolism-driven immunity: phages, metabolites, and discovery of new enzymes, molecules, and pathways 🦠🧬
embl.org
Osterman Group – Metabolism-driven immunity
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Darren Obbard @darrenobbard.bsky.social · 18/05/2026
Exciting paper! - www.researchsquare.com/article/rs-8...
researchsquare.com
Cyclic dinucleotides induce chromatin remodeling associated with long-lasting antiviral protection in flies and bees
cGAS-like receptors (cGLRs) are an important family of nucleic acid-sensing pattern recognition receptors in innate immunity, which produce cyclic dinucleotides (CDNs) to activate STING signaling and ...
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Mart Krupovic @mkrupovic.bsky.social · 11/05/2026
With Eugene Koonin, we wrote a rather comprehensive review on the origin, evolution and organization of the #virosphere. We describe all 10 viral realms and the logic behind them, and so much more. Check it out! comptes-rendus.academie-sciences.fr/biologies/ar...
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Tera Levin @teralevin.bsky.social · 02/05/2026
Bacterial immune proteins have repeatedly evolved to become parts of eukaryotic immunity. But how? Our new preprint uncovers a recent horizontal transfer event & shows how eukaryotes co-opted a toxic bacterial immune protein 🦠🧪🧵 1/
Microscopy image showing yeast cells expressing a fluorescently tagged version of the amoeba TirC protein. TirC forms filaments that span the yeast cells.
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Nature Microbiology @natmicrobiol.nature.com · 27/04/2026
Out Now! Nuclease–NTPase antiphage defence systems use conserved molecular features to control bacterial immunity #MicroSky
go.nature.com
Nuclease–NTPase antiphage defence systems use conserved molecular features to control bacterial immunity
Nature Microbiology, Published online: 27 April 2026; doi:10.1038/s41564-026-02312-8A large-scale, comparative cell biology and biochemical screen defines the molecular features controlling antiphage defence systems that encode nuclease effectors and accessory NTPase proteins.
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Bohdana Hurieva🇺🇦 @bhurieva.bsky.social · 23/04/2026
🎉Excited to share our new preprint! TIR domains from diverse animals, including human TLR4, are catalytically active and produce cyclic ADP-ribose (cADPR). This enzymatic activity is widespread in animals and conserved across the tree of life. www.biorxiv.org/content/10.6...
biorxiv.org
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Laurence Ettwiller @ettwiller.bsky.social · 20/04/2026
Those amazing #phages 🦠 figured out 5mC chemistry before we did: 📄 Out today in @MolecularCell we describe a 5mC-selective #deaminase family in environmental phage genomes with broad applications for #5base #sequencing #epigenetics #DNAmethylation #genomics #NGS 🧬🧪 www.cell.com/molecular-ce...
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Kotaro Chihara @kochihara.bsky.social · 20/04/2026
Happy to share our new work on how phages escape bacterial immunity. We show that a phage homing endonuclease drives segmental amplification of anti-defense genes, pointing to a versatile and rapid mode of adaptation. www.nature.com/articles/s41... #PhageSky #MicroSky
nature.com
Phage homing endonuclease amplifies anti-defense genes to evade bacterial immunity - Nature Communications
Phages employ diverse counter-defense strategies to overcome bacterial immune systems. Here, the authors reveal that the phage homing nuclease SegB facilitates immune evasion by promoting the segmenta...
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Vivek Mutalik @vivekmutalik.bsky.social · 03/04/2026
📣Huge preprint 🔔 Today we share something our group has been working toward for a long time, led by @lucasmoriniere.bsky.social We asked can we predict which receptor a phage targets from its genome sequence alone? For most phages, we couldn’t. So Lucas set out to do something I had only dreamed of.
Phage receptor prediction from genome sequencing alone. Bacterial receptor (blue) interacting with phage proteins (purple) is shown here
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Aude Bernheim @audeber.bsky.social · 02/04/2026
How diverse is bacterial immunity ? We report in @science.org how language models allowed us to predict 2.4M antiphage proteins spanning >23K novel potential systems. 👏 @emordret.bsky.social, @alexhv.bsky.social & al doi.org/10.1126/scie... Explore them here defensefinder.mdmlab.fr/wiki/refseq_...
science.org
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Modell lab @jwmodell.bsky.social · 27/03/2026
How do you kill a MRSA superbug armed with 15 different anti-phage defense systems? You make a smarter phage. Check out our latest preprint on overcoming bacterial immunity using defense-guided engineering to build durable therapeutic phage cocktails! Led by Sarah Voss. doi.org/10.64898/202...
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Uday Tak @snowkaryote.bsky.social · 27/03/2026
Happy to share the final version of my postdoc work on bacterial CBASS immunity with @aaronwhiteley.bsky.social published in @cp-cellhostmicrobe.bsky.social www.cell.com/cell-host-mi...
cell.com
Bacterial 2′,3′-cGAMP activates a SAVED effector to form membrane-disrupting filaments and restrict phage replication
Tak et al. discover that bacteria use 2′,3′-cGAMP, the same signaling molecule employed by mammalian cGAS-STING, for phage defense. In response to phage, 2′,3′-cGAMP activates filament formation of Ca...
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Kelly Nguyen @kellythd-nguyen.bsky.social · 26/03/2026
Bittersweet moment to give special thanks to the late Kiyoshi Nagai and former colleague for developing the yeast expression system that we made use of in this work.
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Ben Adler @benadler.bsky.social · 25/03/2026
I love this concept -- plasmid to Cryo structure in a day! www.biorxiv.org/content/10.1...
biorxiv.org
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Malcolm White @mfwhite2.bsky.social · 16/03/2026
New preprint: Cyclic tri-adenylate signalling by a Panoptes anti-phage guard system with a CARF-TM effector. Great work led by Sabine Grüschow www.biorxiv.org/content/10.6...
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bioRxiv Biochemistry @biorxiv-biochem.bsky.social · 15/03/2026
Cyclic tri-adenylate signalling by a Panoptes anti-phage guard system with a CARF-TM effector www.biorxiv.org/content/10.64898/20…
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Brianna Duncan-Lowey @bduncanlowey.bsky.social · 11/03/2026
I'm hiring a postgrad, a great position for someone looking for a few years of training before applying to grad school! Come join us and learn microbiology, protein purification, and mucosal immunology: postdocs.yale.edu/posts/2026-0...
postdocs.yale.edu
Postgraduate Associate Position — Dept of Immunobiology, Yale School of Medicine
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Viroscope @viroscope.bsky.social · 07/03/2026
The Trojan Horse is real, and it’s microscopic! 🐴🦠 Our paper is out today in @cellcellpress.bsky.social! We discovered that deltaviruses physically hide INSIDE helper viruses to sneak into new cells. And to prove it, we had to image them from every angle. 🧵👇 www.sciencedirect.com/science/arti...
sciencedirect.com
Deltaviruses spread through a viral Trojan Horse
Hepatitis D-like satellite viruses, known as deltaviruses, have been recently discovered in a wide range of animals. These viruses are thought to expr…
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Aritz Roa-Eguiara @aritz-roa.bsky.social · 07/03/2026
🚨Preprint! Happy to share the research from my PhD “Genome delivery of a contractile tailed phage and its superinfection exclusion mechanism”. We use cryoEM to study the genome ejection of the phage T4, revealing how the tape measure protein regulates the process. www.biorxiv.org/content/10.6...
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Sam Hobbs @hobbslabutah.bsky.social · 06/03/2026
CBASS is a cyclic nucleotide-based antiviral system in bacteria that is related to cGAS-STING signaling in animals. One of the big questions is how CBASS is activated during phage infection? We made some progress on this during my final year in the Kranzusch lab. www.biorxiv.org/content/10.6...
biorxiv.org
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Sorek Lab @soreklab.bsky.social · 05/03/2026
Out today: We discovered new viral proteins that target immune signaling molecules, solely based on their AlphaFold-predicted shapes www.science.org/doi/10.1126/... Congrats Nitzan Tal and coauthors! Thank you Kranzusch lab for the fun collaboration! Linking below previous thread on our findings
science.org
Structural modeling reveals phage proteins that manipulate bacterial immune signaling
Immune systems in animals, plants, and bacteria often rely on intracellular nucleotide signaling, which viruses can block by sequestering or degrading these signals. We identified structural and bioph...
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Nitzan Tal @nitzantal.bsky.social · 13/07/2025
📢Preprint out! Excited to share my final work from the @soreklab.bsky.social! We mined phage dark matter using structural features shared by anti-defense proteins (viral tools that help phages bypass bacterial immunity) to guide discovery. Found 3 new families targeting immune signaling!
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Franklin Nobrega @fnobrega.bsky.social · 03/03/2026
In our latest work, we characterise the Tmn defence system. We reveal plasmolysis as a new way to block phage infection, dramatically reducing secondary infections.
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 26/02/2026
A 5-hydroxymethylcytosine DNA glycosylase provides defense against T-even bacteriophages www.biorxiv.org/content/10.64898/20…
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 26/02/2026
CBASS limits bacteriophage production while maintaining cell viability in Pseudomonas aeruginosa www.biorxiv.org/content/10.64898/20…
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Malgorzata Figiel @mfigiel.bsky.social · 25/02/2026
Excited to share our preprint exploring the structural, biochemical and in vivo properties of DRT7/UG10 reverse transcriptases which produce dsDNA using their primase and polymerase activities and provide broad-spectrum antiphage defense! www.biorxiv.org/content/10.6...
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Molecular Microbiology @molmicrounihoh.bsky.social · 24/02/2026
🫳 For c-di-AMP aficionados: Structural mechanism and inhibitor discovery for DhhP, a Borrelia burgdorferi cyclic di-AMP phosphodiesterase with an Fe/Mn bimetallic center! In 👇 Structure www.cell.com/structure/fu... @structure
cell.com
Structural mechanism and inhibitor discovery for DhhP, a Borrelia burgdorferi cyclic di-AMP phosphodiesterase with an Fe/Mn bimetallic center
Klima et al. report the crystal structure of DhhP, a cyclic di-AMP phosphodiesterase of Borrelia. The structure reveals atomic details of the heterobimetallic active site and the overall asymmetry of ...
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Inga Songailiene @ingasongailiene.bsky.social · 24/02/2026
1/5 Happy by a recent biorxiv pre-print about DARNA (PD-T7-3) anti-phage defense system. This system is activated by binding to ssDNA, presented by phage SSB, to cleave tRNA in the anti-codon loop. www.biorxiv.org/content/10.6...
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Ben Morehouse @benmorehouse.bsky.social · 19/02/2026
I am incredibly honored to receive this recognition from the Michelson Medical Research Foundation for our work on innate immune signaling. www.michelsonmedicalresearch.org/news/michels...
michelsonmedicalresearch.org
Michelson Medical Research Foundation Awards $750,000 to Rising Immunology Leaders
Michelson Medical Research Foundation (MMRF) is proud to announce the eighth cohort of recipients of its 2026 Michelson Prizes: Next Generation Grants , naming five early-career scientists whos...
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Max Fels @mfels.bsky.social · 17/02/2026
The giant viruses surprised us at almost every turn of this project, but ultimately led us down a very rewarding path. Happy to share this work is now available online 🧪
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Kranzusch Lab @kranzuschlab.bsky.social · 17/02/2026
Max Fels @mfels.bsky.social from our lab discovers giant DNA viruses that infect amoeba encode eIF4E and the entire suite of 4F complex proteins to control mRNA translation, including beautiful crystal structures of viral 4E bound to modified mRNA 5' caps: www.cell.com/cell/fulltex...
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Stefan Rothenburg @stefanrothenburg.bsky.social · 12/02/2026
rdcu.be/e3IC6
rdcu.be
Transmission of MPXV from fire-footed rope squirrels to sooty mangabeys
Nature - An outbreak of MPXV in sooty mangabeys in Côte d’Ivoire was linked to MPXV-infected fire-footed rope squirrels, providing direct evidence of interspecies transmission and...
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Nature Reviews Immunology @natrevimmunol.nature.com · 05/02/2026
On the balance of knowledge
dlvr.it
On the balance of knowledge
Nature Reviews Immunology, Published online: 05 February 2026; doi:10.1038/s41577-026-01276-4Ruslan Medzhitov shares his thoughts on the balance between generating data and developing theories in immunology, with a focus on exploring the rules that govern complex systems.
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Nature Reviews Microbiology @natrevmicro.nature.com · 06/02/2026
New online! The paradox of immune systems conservation between prokaryotes and eukaryotes
dlvr.it
The paradox of immune systems conservation between prokaryotes and eukaryotes
Nature Reviews Microbiology, Published online: 05 February 2026; doi:10.1038/s41579-026-01284-0The widespread prokaryotic immune systems, in particular restriction–modification, CRISPR–Cas and defensive toxin–antitoxin systems, are absent in eukaryotes, whereas relatively rare ones, such as Argonautes and antiviral STAND NTPases, became central to eukaryotic innate immunity. In this Comment, we hypothesize that the cause of this paradox is the drastic reduction of horizontal gene transfer rate in eukaryotes.
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