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Emilie Brasset

@emiliebrasset.bsky.social
526 followers 320 following 21 posts

Transposable Element, piRNA & Drosophila #GReD #UCA, #Clermont-Ferrand

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Reposted by Emilie Brasset
Alexis Verger 🧬🧫🧪 @alexis-verger.cpesr.fr · 16/07/2026
In memory of Pierre Chambon (1931–2026): a visionary pioneer of modern molecular biology by Hinrich Gronemeyer in @embojournal.org link.springer.com/article/10.1...
link.springer.com
In memory of Pierre Chambon (1931–2026): a visionary pioneer of modern molecular biology - The EMBO Journal
The EMBO Journal -
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IBMP | Institut de biologie moléculaire des plantes @ibmp-cnrs.bsky.social · 27/04/2026
Pierre Bourguet (@p-bourguet.bsky.social) has been awarded a Marie Skłodowska-Curie Postdoctoral Fellowship for the RegulatoryTEmbryo project at IBMP! His project explores how transposable elements shape plant embryogenesis and rewire developmental gene networks. #MSCA
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The EMBO Journal @embojournal.org · 23/03/2026
Which transcription factors control transposable element expression during zygotic genome activation? Gain-of-function screen by @metorrespadilla.bsky.social and coworkers identifies TBP as direct regulator of mouse endogenous retrovirus-like elements link.springer.com/article/10.1...
link.springer.com
TBP regulates transposable element expression in early mouse embryos - The EMBO Journal
The activation of the embryonic genome is a crucial step in development. In addition to thousands of genes, many transposable elements (TEs) are robustly transcribed during early mammalian development...
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Eurico Morais-de-Sá @polarityi3s.bsky.social · 15/04/2026
Drosophila border cells are beautiful to watch… but far from easy to image. Kudos to the brave and skilled @vitoryang.bsky.social, who took on the challenge of establishing border cell migration imaging in the lab! His movies are astonishing, and now our first-ever study on #cell #migration is out!
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Emilie Brasset @emiliebrasset.bsky.social · 10/04/2026
Such sad news. He was a major contributor to small RNA biology — an inspiring scientist and such a kind collaborator. I have no words 🥲 www.cruk.cam.ac.uk/news/in-memo...
cruk.cam.ac.uk
In Memoriam: Professor Greg Hannon (1964–2026) - Cancer Research UK Cambridge Institute
Greg was already a world-renowned scientist when appointed Director, and for the community, he was a visionary leader, a cherished mentor, and a singular force of nature whose influence shaped the research landscape.
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Peter Andersen @germline.bsky.social · 01/04/2026
Germ cells have their own versions of core transcription factors and fertility depends on them. We're hiring a PhD student to figure out how! 📢 Fly genetics + proteomics + genomics. Fully funded. Aarhus University 🇩🇰 Deadline May 1 👇 Please share with anyone who might be interested!
phd.nat.au.dk
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Emilie Brasset @emiliebrasset.bsky.social · 09/04/2026
Love Drosophila genetics — this journal club was a great way to share that enthusiasm and pay tribute to the pioneers of transposons regulation 🪰 How classical genetics uncovered key determinants of TE silencing #transposon @igred.fr @igred.fr 👇👇
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Carine Meignin 🪰🦠🧬🌈 @cmeignin.bsky.social · 30/03/2026
🆕 New paper out with Jean-Luc Imler and Rune Hartmann in EMBO journal. We dissect mechanisms of antiviral immunity and how STING is activated by FADD and DREDD during viral infection in Drosophila melanogaster. link.springer.com/article/10.1...
link.springer.com
FADD is recruited to activated STING oligomers to initiate caspase-mediated NF-κB activation in Drosophila melanogaster - The EMBO Journal
STING is an evolutionarily conserved key regulator of innate immunity. In the model organism Drosophila melanogaster, STING activates the NF-κB-like transcription factor Relish, initially characterize...
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Reposted by Emilie Brasset
Navin B. Ramakrishna @navinbr.bsky.social · 17/03/2026
Integrated small and long RNA sequencing reveals piRNA mediated transposon repression during human oogenesis www.nature.com/articles/s41...
nature.com
Integrated small and long RNA sequencing reveals piRNA mediated transposon repression during human oogenesis - Nature Communications
The roles of the piRNA pathway in human oocytes are poorly understood. Here, the authors profile small and long RNAs in single oocytes and show that short piRNAs broadly repress transposable elements,...
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Emilie Brasset @emiliebrasset.bsky.social · 19/03/2026
www.science.org/doi/10.1126/...
science.org
Modifying meiotic recombination by targeting chromatin regulators to crossover hotspots in Arabidopsis
Targeting chromatin modifiers to DNA hotspots reveals causal link between histone marks, transcription, and meiotic recombination.
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Reposted by Emilie Brasset
Johann Confais @johannconfais.bsky.social · 16/02/2026
🚨📢📄 Article in press in Genome Biology doi.org/10.1186/s130... We introduce panREPET, a reference-free pipeline to detect shared transposable element (TE) insertions across pangenomes and retrace their evolutionary dynamics #TEsky 🧵👇
doi.org
A reference-free pipeline for detecting shared transposable elements from pan-genomes to retrace their dynamics in a species - Genome Biology
Background The role of transposable elements (TEs) in host adaptation has gained interest in recent years. Individuals of the same species undergo independent TE insertions, providing genetic variabil...
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sandraduharcourt.bsky.social @sandraduharcourt.bsky.social · 23/02/2026
Excited to announce the upcoming Jacques Monod Conference on the mechanistic and evolutionary basis of programmed DNA elimination (Sept 21–25, 2026): cjm.sb-roscoff.fr/en/conferenc... Organized by @laurarossevo.bsky.social and myself.
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Institut Jacques Monod @ijmonod.bsky.social · 11/03/2026
#JobOffer 💼 Professeur en stabilité du génome 📍Institut Jacques Monod 📆 1e septembre 2026 Les candidatures sont ouvertes jusqu'au 3 avril 2026 16h🔗 u-paris.fr/recrutement-...
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Harmit Singh Malik @harmitmalik.bsky.social · 11/03/2026
Bacterial Schlafen proteins mediate phage defence (new work from @anemudraia.bsky.social and @artemnemudryi.bsky.social labs) www.nature.com/articles/s41... Schlafens are an ancient, mechanistically conserved family of tRNA-targeting immune effectors.
nature.com
Bacterial Schlafen proteins mediate phage defence - Nature Microbiology
This study highlights that Schlafens are ancient, mechanistically conserved immune effectors that mediate antiviral immunity in organisms ranging from humans to bacteria.
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PaulineJullienLab @pejullien.bsky.social · 09/03/2026
🌱 🚨Postdoc position – Plant Chromatin Biology (Strasbourg) Grob and Jullien Lab - details attached 📅 Apply by March 30, 2026 📩 stefan.grob@cnrs.fr Please share with anyone who might be interested! #Postdoc #PlantScience #Epigenetics #Chromatin
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Maxim Greenberg @maxvcg.bsky.social · 09/03/2026
Very excited to announce the FIRST symposium on epigenome editing! These tools are becoming widely used in mol bio, ag & therapy. It's time to bring leaders together to discuss this rapidly growing and exciting field. And why not in Paris! Please register & share! (1/2) ctrlepiedit.sciencesconf.org
Flyer for symposium: https://ctrlepiedit.sciencesconf.org/
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Mirouse lab @mirouse-lab.bsky.social · 06/03/2026
📢 PhD position in our lab! (MSCA COFUND) About dystrophin in Drosophila muscle progenitor cells 🧬🪰 #PhDPosition #DevBio #Drosophila #StemCells For candidates from outside France or have lived in France <12 months in the last 3 years. More info 👇 (Project #16) www.muskle.eu/recruitment/
muskle.eu
Open positions - MuSkLE
First competitive call open! The first competitive call in the frame of the MuSkLE programme, which aims at selecting 17 doctoral fellows, opens on 6th March 2026 and closes on 6th May 2026. The open ...
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Emilie Brasset @emiliebrasset.bsky.social · 28/02/2026
www.nature.com/articles/d41...
nature.com
COVID’s origins: what we do and don’t know
Researchers summarize key insights from the world’s first comprehensive investigation into how a pandemic started.
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Maya Voichek @mayavoichek.bsky.social · 11/01/2026
The (Yoav) Voichek lab has opened its gates at the Weizmann Institute, and is actively recruiting students and researchers at all levels - come explore gene regulation and computational genomics in a fun, friendly sprouting lab 🤗🥼⚗️🧪 www.weizmann.ac.il/plants/voichek
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Arnaud Le Rouzic @arnaudlerouzic.bsky.social · 13/02/2026
We were all very sad to learn the death of Pierre Capy. Pierre was a professor at University Paris Saclay, in the 1990s, he started a group working on the evolutionary genomics of transposable elements; this group is still very active today. He was a great teacher, mentor, and colleague.
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ideevl.bsky.social @ideevl.bsky.social · 05/02/2026
Pierre Capy était un généticien, un drosophiliste, un acteur majeur dans l'essor de la génétique des éléments transposables en France. Très impliqué dans l'administration de la vie scientifique, il a aussi été directeur du laboratoire LEGS (actuel @EGCE), et un des fondateurs en 2016 de @IDEEV.
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Cedric Feschotte @cedricfeschotte.bsky.social · 07/01/2026
New Year, New Paper!🎊 Pervasive cis-regulatory co-option of a transposable element family reinforces cell identity across the mouse immune system www.biorxiv.org/content/10.6... Centerpiece of Jason Chobirko's PhD, talented PhD student co-mentored by Andrew Grimson & me. Really excited about it!🧵
biorxiv.org
Pervasive cis-regulatory co-option of a transposable element family reinforces cell identity across the mouse immune system
Transposable elements (TEs) make up about half of the human and mouse genomes and play important regulatory roles in immune responses. However, the cis -regulatory contribution of TEs to immune cell d...
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Junior European Drosophila Investigators @fly-jedi.bsky.social · 09/01/2026
Dear #Drosophila researchers, the year starts with good news! The date and venue for our next meeting is confirmed: June 1st to 3rd at the beautiful Historic Hotel Castle De Palmela in Portugal! Mark the dates, registration will open soon!
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Johann Confais @johannconfais.bsky.social · 14/12/2025
Such a #PLEASURE to be involved in this collaboration ! All the #transposon annotated during the project can be visualized in #RepetDB the TE database. #TEsky
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Katy @katyboots.bsky.social · 04/12/2025
So excited to finally be able to share my first paper and the culmination of my PhD work with @felipekteixeira.bsky.social 🪰🔬 www.pnas.org/doi/10.1073/...
Systematic analysis of noncanonical ribosomal protein paralogs does not provide evidence for specialized functions in Drosophila
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Emilie Brasset @emiliebrasset.bsky.social · 10/12/2025
Wow, huge congratulations on your ERC Consolidator @leandroquadrana.bsky.social!Truly well-deserved, I’m really happy for you! www.insb.cnrs.fr/fr/personne/...
insb.cnrs.fr
Leandro Quadrana
La recherche de Leandro Quadrana combine des approches de génétique moléculaire, de génomique des populations et de biologie computationnelle pour comprendre comment les éléments transposables façonnent les génomes et l’adaptation des organismes. Après une thèse (2008-2013) réalisée à l’Université de Buenos Aires, il rejoint l’équipe de Vincent Colot à l’Institut de biologie de l’École normale supérieure à Paris comme chercheur post-doctoral, où il étudie le contrôle épigénétique des éléments transposables. Recruté au CNRS en tant que chargé de recherche en 2017, il crée et dirige depuis 2021 l’équipe « Génomique et épigénomique des plantes » au sein de l’Institut de sciences des plantes de Paris-Saclay - IPS2 (CNRS/Université Paris-Saclay). Grâce au programme Momentum du CNRS et une ERC Starting Grant, son équipe a mis en place des approches expérimentales et bio-informatiques pour suivre l’activité des éléments transposables dans des populations entières de plantes et en réponse aux changements environnementaux. Ses travaux ont été récompensés par la médaille de bronze du CNRS en 2021 et ont contribué à positionner son équipe comme un acteur majeur de l’étude des « gènes sauteurs » chez les plantes.
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Bardin Lab @bardinlab.bsky.social · 03/12/2025
Come join us in beautiful Roscoff for this Conference Jacques Monod on Developmental regulation: from molecular to ecological niches May 18-22, 2026 Roscoff, France Abstract deadline: January 31, 2026 Apply here: cjm.sb-roscoff.fr/en
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Damir Baranasic @da-bar.bsky.social · 03/12/2025
JASPAR 2026 is out 🎉 The new release massively expands the TF motif collections and adds a dedicated DeepLearning collection of motifs learned from deep learning models. Database: jaspar.elixir.no Paper (NAR): doi.org/10.1093/nar/... 🧵1/2
jaspar.elixir.no
JASPAR: An open-access database of transcription factor binding profiles
JASPAR is the largest open-access database of curated and non-redundant transcription factor (TF) binding profiles from six different taxonomic groups.
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Vincent Pasque @pasquelab.bsky.social · 03/12/2025
We are excited to share our new preprint: SMARCA2/4-Dependent Chromatin Remodelling Establishes Gene Regulatory Programs in Early Human Embryos and Blastoids. www.biorxiv.org/content/10.64898/2025.12.01.691499v1
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PLOS Biology @plosbiology.org · 04/12/2025
Membrane #nanotubes are cytoskeletal structures that facilitate intercellular communication. This study shows that polar cell-derived #microtubule nanotubes play a role in #Drosophila #fertilization, creating a channel in the eggshell that facilitates #sperm entry @plosbiology.org 🧪 plos.io/3XwOlvS
Top left: Slbo in the outer border cell non- cell autonomously regulates JNK signaling to maintain the proper apical–basal polarity of the migrating border cell cluster. The proper polarity of the border cell cluster facilitates the formation of the polar cell protrusion at stage 13. Bottom left: After formation of the polar cell protrusion, JNK signaling in the polar cell regulates the movement of lysosomal components towards the oocyte through the nanotube. is deposited at the tip of the protrusion which aids to open the vitelline envelope for sperm entry during fertilization. Right: High-resolution 2D STED imaging (30 nm XY resolution) of a Stage 13 Drosophila egg chamber reveals lysosomal dynamics within a polar-cell nanotube. The polar-cell protrusion is labelled with Fas III (Magenta), nuclei are stained with DAPI (Blue), and lysosomal compartments are visualized using LAMP1-eGFP (Green), which are enriched at the apical side of the polar cell and are also present within the protrusion, indicating active trafficking through the nanotube. Images were acquired with a 60× objective on an ABBERIOR 3D-STED Facility Line microscope.
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Emilie Brasset @emiliebrasset.bsky.social · 04/12/2025
pubmed.ncbi.nlm.nih.gov/41329733/
pubmed.ncbi.nlm.nih.gov
The human endogenous retroviral envelope HEMO protein interacts with BACE2: Novel partnership acquired in the primate lineage - PubMed
Endogenous retroviruses (ERV) represent 8 to 10% of mammalian genome. While most ERV are defective, a few retroviral genes, such as the envelope syncytins, were exapted during evolution and likely contributed to the emergence of placental mammals. We have previously identified the oldest full-length …
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Miguel Branco @brancolab.bsky.social · 04/12/2025
Another envelope protein in the human genome. Expressed in the placenta, of course.
pubmed.ncbi.nlm.nih.gov
The human endogenous retroviral envelope HEMO protein interacts with BACE2: Novel partnership acquired in the primate lineage - PubMed
Endogenous retroviruses (ERV) represent 8 to 10% of mammalian genome. While most ERV are defective, a few retroviral genes, such as the envelope syncytins, were exapted during evolution and likely contributed to the emergence of placental mammals. We have previously identified the oldest full-length …
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Thomas Lecuit @thomaslecuit.bsky.social · 24/11/2025
And here is the link to access the whole pdf. Enjoy! I strongly believe that focusing on information & computation during Development provides an important framework, that encapsulates the genetic, chemistry & mechanics, but focusses on organisation, dynamics & logic. PDF: tinyurl.com/4hn34t8w
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brunolemaitre.bsky.social @brunolemaitre.bsky.social · 24/11/2025
An open webinar on our reproducibility project 'WHAT 400 DROSOPHILA PAPERS Teach Us about Doing Better Science' on December 9th 2PM EEST time (1PM Swiss time). Registration below
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sandraduharcourt.bsky.social @sandraduharcourt.bsky.social · 10/11/2025
Excited to share our new preprint on BioRxiv! A collaborative effort spanning many years and several labs to uncover what the germline chromosomes of Paramecium really look like. 🔗 www.biorxiv.org/content/10.1... 1/5
biorxiv.org
The tiny germline chromosomes of Paramecium aurelia have an exceptionally high recombination rate and are capped by a new class of Helitrons
Background. Paramecia belong to the ciliate phylum of unicellular eukaryotes characterized by nuclear dimorphism. A diploid germline micronucleus (MIC) transmits genetic information across sexual gene...
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Marco MILAN LAB @milanlab.bsky.social · 07/11/2025
Our lab is actively looking for posdocs and there is NOW an Open Call for Postdoc contracts (3 years) here: www.aei.gob.es/en/announcem...
aei.gob.es
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Emilie Brasset @emiliebrasset.bsky.social · 22/11/2025
www.embopress.org/doi/full/10....
embopress.org
Fluorescent protein and peptide tags alter condensate formation and dynamics in vivo and in vitro | EMBO reports
imageimageProtein and peptide tags can profoundly alter condensation in a tag- and protein-specific manner, both in cells and in vitro, highlighting the need for careful validation in condensate studi...
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Julius Brennecke @juliusbrennecke.bsky.social · 20/11/2025
anybody looking for exciting opportunities in RNA research, with the goal to use and learn state of the art thinking and experimenting: here is a good starting point. Ulrich is an outstanding scientist and natural leader. 👇👇👇👇
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Mandy Jeske @mandyjeske.bsky.social · 18/10/2025
Excited to share our new @narjournal.bsky.social paper! Using ReLo and AlphaFold, we described a network of interactions between Drosophila piRNA pathway factors suggesting new links how they coordinate to ensure transposon silencing and genome integrity. academic.oup.com/nar/article/...
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Gavin Woodruff @weirdworms.bsky.social · 04/11/2025
Transposon Regulation in the Caenorhabditis elegans Germline and Soma www.biorxiv.org/content/10.1...
biorxiv.org
Transposon Regulation in the Caenorhabditis elegans Germline and Soma
Transposons are parasitic nucleic acids present in most genomes. The ability of transposons to mobilize makes them a source of genetic diversity and a threat to genome integrity. Interestingly, mutati...
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Gregor Mendel Institute of Molecular Plant Biology @gmivienna.bsky.social · 18/11/2025
Congratulations to Magnus Nordborg of the GMI and @oeaw.bsky.social who, together with Leandro Quadrana and @pierrebaduel.bsky.social, has received an @fwf-at.bsky.social Grant for the project “Genetic and epigenetic determinants of transposon dynamics”. More here: www.oeaw.ac.at/gmi/detail/n...
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Megan McDonald @mcdonaldmeganc.bsky.social · 18/11/2025
Our latest pre-print on TE-mediated tandem duplication of the ToxB effector is now online...still a puzzle for us but we think it is in a Helitron! Together with amazing collaborators, Reem Aboukhaddour and Ryan Gourlie #TE #fungi www.biorxiv.org/content/10.1...
biorxiv.org
The virulence gene ToxB is both amplified and disrupted by transposons in the wheat pathogen Pyrenophora tritici-repentis
### Competing Interest Statement The authors have declared no competing interest. Agriculture and Agri-Food Canada, https://ror.org/051dzs374 Alberta Grain Saskatchewan Wheat Development Commissio...
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The EMBO Journal @embojournal.org · 13/11/2025
piRNA-directed DNA methylation may not be a mammalian invention, but can already be found in the germline of axolotl salamanders Donal O’Carroll and coworkers www.embopress.org/doi/full/10....
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Cedric Feschotte @cedricfeschotte.bsky.social · 18/11/2025
TE x ZFP = Evolution! Writing this with Olga @orpsf.bsky.social & Didier @trono-lab.bsky.social was a major highlight of my 🇨🇭sabbatical. Such a treat! 🍫Hope you enjoy it as much as we enjoy piecing it together.
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Alex de Mendoza @alexdemendoza.bsky.social · 18/11/2025
Out today, our take on 6-methyladenine #6mA evolution in Eukaryotes @natgenet.nature.com. We asked a simple question, is really DNA 6mA common across the eukaryotes? The answer is "yes" if you're a unicellular eukaryote 🦠, not so if you're multicellular 🐝🌱🍄. www.nature.com/articles/s41... 1/9
nature.com
Adenine DNA methylation associated with transcriptionally permissive chromatin is widespread across eukaryotes - Nature Genetics
Long-read sequencing in 18 unicellular eukaryotes reveals that 6mA is widespread across eukaryotes and is enriched at transcriptionally permissive regions, which are also marked by H3K4me3.
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Luca Soldini @lucasoldini.bsky.social · 27/10/2025
(1/9) Join us in Bern, Switzerland (8–11 Feb 2026) for our EMBO Workshop on Molecular Mechanisms of Selfish Elements and Strategies! Organized with Tanja Schwander, Laura Ross (@laurarossevo.bsky.social) and Axel Imhof. meetings.embo.org/event/26-sel... #EMBOselfishElements #EMBOevents
meetings.embo.org
Molecular mechanisms of selfish elements and strategies
Certain genes, chromosomes, organelles, or entire sets of chromosomes can bias their transmission to the next generation, propagating themselves at the expense of the rest of the genome. Referred to …
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Julius Brennecke @juliusbrennecke.bsky.social · 07/11/2025
Some impressions from the rather fabulous #EMBOmobilegenome Mobile Genome meeting in Heidelberg Morning walk through the woods, exciting panel discussion, flash talks, lab community, drosophila friends, … @events.embl.org The transposon community is going very strong. see you all again in 2027!!
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Julius Brennecke @juliusbrennecke.bsky.social · 04/11/2025
great to be at the #EMBOMobileGenome meeting in Heidelberg with a wonderful bunch of colleagues, speakers and attendees. this meeting is a good reflection of the excitement and collegiality in the transposon field. kindly sponsored by @embo.org
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