Reposted by Daniela BarillàJolien van Hooff @jvhooff.bsky.social · 06/10/2026We're looking for a PhD candidate who's eager to study how the genomes of fascinating eukaryotic microbes evolve and organize - and we have a fully funded PhD position available! 0108
Reposted by Daniela BarillàAlex de Mendoza @alexdemendoza.bsky.social · 06/10/2026It's live! The next @embo.org #EvoChromo meeting will take place next year October in St Feliu de Guíxols (Spain), check it out here: meetings.embo.org/event/27-chr.... It's been great to co-organise with @dodonova-sveta.bsky.social @kellervalsecchi.bsky.social @cedricfeschotte.bsky.social & Nick I.meetings.embo.orgChromatin evolution from molecules to genomesTechnological advances over the past decade have enabled genome-wide mapping of chromatin organization across diverse organisms at unprecedented resolution. These studies have uncovered both conserve… 03220
Reposted by Daniela BarillàKranzusch Lab @kranzuschlab.bsky.social · 01/10/2026Our story with @hobbslabutah.bsky.social discovering CBASS sensing of phage proteases out now in @science.org New data include CBASS recognition of diverse proteases beyond T4, and verifying CD-NTase activation loop cleavage as the trigger for defense in vivo www.science.org/doi/10.1126/...science.orgPhage proteases activate CBASS antiphage immunityCyclic oligonucleotide–based antiphage signaling systems (CBASS) are bacterial immune pathways evolutionarily related to cGAS-STING (cyclic GMP-AMP synthase–stimulator of interferon genes) in humans. ... 08838
Reposted by Daniela BarillàClaudio Cantù @claudiocantu81.bsky.social · 01/10/2026CUT&ID does Genomics+Proteomics in one shot via the fusion protein Lazarus Out @narjournal.bsky.social Unstoppable @annanordin.bsky.social is thinker+executor Get in touch if you wish to try it—plasmid soon @addgene.bsky.social 🙏 @liu.se @scilifelab.se @kawresearch.bsky.social @cancerfonden 12215
Daniela Barillà @danielabarilla.bsky.social · 30/09/2026theconversation.com/hindi-greek-...theconversation.comHindi, Greek and English all come from a single ancient language – here’s how we knowThis now-extinct tongue was probably spoken somewhere in Eurasia as many as 8,000 years ago. But how do we know Proto-Indo-European must have existed? 020
Reposted by Daniela BarillàRobin Bisson @robinbisson.bsky.social · 30/09/2026The Labour Party conference didn’t deliver any surprises on R&D, but it was possible to feel which way the wind is blowing I sat down with Emily Darlington MP to talk about it. As an adviser during the New Labour years, both on science and within the Treasury, she had some important insights 154
Reposted by Daniela BarillàThe Guardian @theguardian.com · 30/09/2026No 10 gathering evidence on public support for rejoining the EUtheguardian.comNo 10 gathering evidence on public support for rejoining the EUSenior Downing Street officials reach out to thinktanks and pollsters as they look to test backing for reversing Brexit Senior Downing Street officials have been reaching out to thinktanks and pollsters as they look to test public support for the UK rejoining the EU. Aides to Andy Burnham have been talking to EU experts in a range of organisations about how the public would view a promise to rejoin, as momentum builds behind including such a pledge in the next Labour manifesto. Continue reading... 56318104
Reposted by Daniela BarillàCameron Thrash @jcamthrash.bsky.social · 30/09/2026Dynamic protrusions mediate crawling motility in Asgard archaea www.nature.com/articles/s41... #jcampubsnature.comDynamic protrusions mediate crawling motility in Asgard archaea - NatureAnoxic live-cell imaging shows actin-dependent crawling motility and dynamic protrusions in Asgard archaea, providing insights into cellular innovations that may have contributed to eukaryotic evoluti... 02810
Reposted by Daniela BarillàSvetlana Dodonova @dodonova-sveta.bsky.social · 30/09/2026New preprint from Dodonova lab 🔔! Capturing multiple states by cryo-EM❄️, we show for the first time how archaeal RNA Polymerase engages a nucleosome and forms direct contacts with histones! 🧬 Great work by Gabriele & a fantastic collaboration with Dina Grohmann! 🧵 www.biorxiv.org/content/10.6... 19936
Reposted by Daniela BarillàEuropean Research Council (ERC) @erc.europa.eu · 29/09/2026Research evaluation faces growing pressure: demand for competitive research funding is rising, while AI is rapidly changing how proposals can be written and assessed. In this context, the ERC & Science Europe had a workshop with research funding and performing organisations from 5 continents. 2228
Reposted by Daniela BarillàAdam Golberg @cash4questions.bsky.social · 28/09/2026Good summary article on mis/use of AI in research grant assessment from Research Agenda, a new venture from the WonkHe team. Bonus points for "Reviewer 2.0" headline... www.researchagenda.news/articles/rev...researchagenda.newsReviewer 2.0To misquote Douglas Hofstadter: the backlash against AI in the research system will be bigger than you’re expecting, even once you take into account that it… 142
Reposted by Daniela BarillàDina Grohmann @curiousdina.bsky.social · 28/09/2026🌙 Bringing Archaea to moon! Our latest study with the Orsi lab shows that M. okinawensis can survive, perform methanogenesis, and grow under simulated Enceladus conditions. Yet another reminder of how astonishingly adaptable Archaea are. www.science.org/doi/10.1126/...science.orgEnceladus-like geochemistry fuels methanogenesis under extreme CO2 limitationSaturn’s icy moon Enceladus features chemical signatures consistent with an alkaline soda ocean with H2 production via hydrothermal water-rock reactions. Chemolithoautotrophic methanogenesis is thermo... 0119
Reposted by Daniela BarillàBrian Stevenson Ph.D. spirochete lab @bstevensonlab.bsky.social · 28/09/2026MinD-like ATPase FlhG synchronizes flagellation and cell division in spirochetes Brilliant new paper from C. Li, J. Liu, and colleagues mBio: journals.asm.org/doi/10.1128/... #MicroSky 0153
Reposted by Daniela Barillà@ArteCalabria @artecalabria.bsky.social · 27/09/2026Anima bizantina in #Calabria: Le tante immagini di un capolavoro bizantino del X sec. d.C., architettura che ci lascia un'eredità oltre che spirituale e culturale anche una unica configurazione tipologica. #arte #beauty #heritage 061
Daniela Barillà @danielabarilla.bsky.social · 27/09/2026I support Wikipedia, where information is still human-created, fact-checked, and 100% free. Join me! donate.wikimedia.orgdonate.wikimedia.orgMake your donation now - Wikimedia FoundationDonate to the Wikimedia Foundation, the nonprofit that hosts Wikipedia and other crucial free knowledge projects. Each year, the generosity of the 2% of readers who donate allows us to expand the reac... 0124
Reposted by Daniela BarillàNature Microbiology @natmicrobiol.nature.com · 25/09/2026Out Now! Systematic mapping of bacteriophage gene essentiality with HIDEN-SEQ #MicroSkygo.nature.comSystematic mapping of bacteriophage gene essentiality with HIDEN-SEQNature Microbiology, Published online: 25 September 2026; doi:10.1038/s41564-026-02455-8HIDEN-SEQ (hidden Acr-enabled transposon-insertion sequencing) is a transposon-insertion sequencing method for phages that systematically links their genes to selectable phenotypes. 0136
Reposted by Daniela BarillàMaya Voichek @mayavoichek.bsky.social · 24/09/2026Super excited to share my postdoctoral work at @imbavienna.bsky.social @viennabiocenter.bsky.social - We discovered that some retrotransposons, or "jumping genes" 🧬, are able to spread from cell to cell via a new viral infectivity route. A short thread: 🧵👇 (1/7) 20257148
Reposted by Daniela BarillàJavier del Campo @fonamental.bsky.social · 23/09/2026A genomic catalog of Earth’s bacterial and archaeal symbionts #symbiosis www.nature.com/articles/s41...nature.comA genomic catalog of Earth’s bacterial and archaeal symbionts - Nature BiotechnologySymbiotic relationships of microorganisms are predicted and cataloged with a machine learning tool. 03516
Reposted by Daniela BarillàDuerkop Lab @duerkoplab.bsky.social · 23/09/2026Better late than never. Congrats to former PhD trainee Shelby Andersen on the publication of RADS. RADS identifies antiphage defense systems connected to small serine recombinases. The question remains, why are defense systems often placed in this context? 🤔 journals.plos.org/plosbiology/...journals.plos.orgSmall serine recombinases are markers for antiphage defense system discoveryIdentifying antiphage defense systems is challenging for bacterial species where such systems are understudied. This study describes a bioinformatic pipeline that uses a small serine recombinase as a ... 0174
Daniela Barillà @danielabarilla.bsky.social · 23/09/2026Happy for you, Nika, mega congrats 🙌!!! Hopefully, see you in Vienna soon. 010
Daniela Barillà @danielabarilla.bsky.social · 23/09/2026Congrats 🥂 Nika @nikapende.bsky.social, Simonetta and all co-authors!!! Celebrate 🍾! 020
Reposted by Daniela BarillàSimonetta Gribaldo @sgribaldo.bsky.social · 23/09/2026Interested in #archaea, #methane, #cell-envelopes? New paper out @nature.com ! We discovered an enzyme that specifically cleaves the cell wall of methanogens, revealing a new chemical structure of archaeal peptidoglycan, 50 yrs after its first description www.nature.com/articles/s41... #MicroSky 🧵👇nature.com 1612578
Reposted by Daniela BarillàNika Pende @nikapende.bsky.social · 23/09/2026So happy to see this paper finally out 🥳 it took only seven years after the first purification of archaeal peptidoglycan 🤣 Congrats to all the people involved 🥂🍾 And here is the story behind the paper: communities.springernature.com/posts/cracki...communities.springernature.comCracking the Archaeal Cell Wall: How a hydrolase overturned a 50-year-old paradigmUsing bioinformatics, biochemistry, NMR, as well as the newly characterized enzyme ArmA from methanogenic archaea, we revised the existing knowledge on archaeal peptidoglycan structure. At the same ti... 95218
Reposted by Daniela BarillàNature Portfolio @natureportfolio.nature.com · 22/09/2026Active chromatin is usually described as open and accessible. The authors of a paper in Nature Genetics write in this Behind the paper post how their live-cell imaging shows instead that euchromatin forms condensed domains, and that cohesin helps keep neighboring domains from mixing. 🧬🧪go.nature.comActive chromatin is not simply open: it forms compact domains that cohesin keeps from mixingActive chromatin is usually described as open and accessible. Our live-cell imaging shows instead that euchromatin forms condensed domains, and that cohesin helps keep neighboring domains from mixing. 0174
Reposted by Daniela BarillàTominaga K. (tomiken) @pacyc184.bsky.social · 31/07/2026pLAST - a tool for rapid comparison and classification of bacterial plasmid sequences | Bioinformatics | Oxford Academicdx.doi.orgpLAST - a tool for rapid comparison and classification of bacterial plasmid sequencesAbstractMotivation. The increasing number of fully sequenced bacterial plasmids being annotated and catalogued has prompted the development of computationa 077
Reposted by Daniela BarillàCameron Thrash @jcamthrash.bsky.social · 21/09/2026Domain classification of archaeal proteomes reveals conserved fold repertoire journals.plos.org/ploscompbiol... #jcampubsjournals.plos.orgDomain classification of archaeal proteomes reveals conserved fold repertoireAuthor summary Archaea are the least-studied of the three domains of life, yet they matter enormously: they flourish in extreme environments, drive global nutrient cycles, and are closely tied to the ... 0125
Reposted by Daniela BarillàMalcolm White @mfwhite2.bsky.social · 21/09/2026New preprint from PhD student Yu Sun. TSR1 is a TIR effector specialised for CRISPR defence. It is an obligate dimer activated by cA3 and degrades its own activator using a ring nuclease domain. Perhaps the first confirmed dimeric TIR effector? www.biorxiv.org/content/10.6... 03421
Reposted by Daniela Barillàuofytechs.bsky.social @uofytechs.bsky.social · 17/09/2026#job for a Lead Technical Specialist on @aria-research.bsky.social funded project in Alphey lab @biologyatyork.bsky.social: specific and targeted gene editing in insect species (micro-injection delivery methods & molecular aspects of gene editing). Apply by 23/9/2026 jobs.york.ac.uk/internal/vac...jobs.york.ac.ukJobs - The University of York 002
Reposted by Daniela BarillàRichard Sever @richardsever.bsky.social · 20/09/2026"All corners of academia will soon be flooded with AI-generated research....Maths and CS go first because their entire output is symbol manipulation...Biology comes later not because biologists are cleverer but because the rate-limiting step is physical" giorgio.gilest.ro/the-weimar-o...giorgio.gilest.roThe Weimar of knowledge – la bottega 56641
Reposted by Daniela BarillàLopes_Lab @lopeslab.bsky.social · 16/09/2026Thrilled to share a new important study from the lab, published today in @nature.com, showing how cohesin mediates efficient replication fork plasticity and stress response, using its loop extrusion activity to promote 3D contacts on replicating DNA: www.nature.com/articles/s41...nature.comCohesin reshapes replication fork contacts to aid fork slowing and reversal - NatureCohesin-mediated loop extrusion limits sister-fork coupling and tethers nearby replication forks under replication stress, promoting fork reversal and slowing fork progression to safeguard genome... 46935
Daniela Barillà @danielabarilla.bsky.social · 19/09/2026Lovely to share this moment of celebration and emotions 🎉, Laura! Thank you! Ad maiora semper! To new scientific adventures and lifelong friendships 🥂! 010
Reposted by Daniela BarillàAnthony Vecchiarelli @cellforganized.bsky.social · 19/09/2026Applications are now being accepted for the 2027 Bacterial Cell Biology & Development GRC, June 6–11! GRS will be on June 5-6, 2027 We’ll likely be oversubscribed, so please apply early! 26638
Reposted by Daniela BarillàMaria Hondele @mariahondele.bsky.social · 18/09/2026Now on bioRxiv 👇 www.biorxiv.org/content/10.6...biorxiv.orgA bacterial nucleolus for cold adaptationCompartmentalisation enables cells to spatially organise essential biochemical processes. This is exemplified by the eukaryotic nucleolus, which concentrates the machinery for ribosome biogenesis. Bac... 12411
Reposted by Daniela BarillàIdeas Roadshow @ideasroadshow.bsky.social · 19/09/2026The Recanati Annunciation by Lorenzo Lotto, c. 1534. 🐈⬛ This version portrays a rather cat-astrophic situation with Mary turning her back on the Archangel Gabriel and instead turning towards the viewer while a black cat is running away in fear. 🗃️ #arthistory #skystorians #caturday #cat #animalart 1228
Reposted by Daniela BarillàKazuhiro Maeshima @kazu-maeshima.bsky.social · 18/09/2026🧬 Our “Behind the Paper” is now online at Nature Communities: “Active chromatin is not simply open—it forms compact domains that cohesin keeps from mixing.” 📖 A short story behind our recent @natgenet.nature.com paper. communities.springernature.com/posts/active... www.nature.com/articles/s41... 04327
Reposted by Daniela BarillàTimes Higher Education (THE) @timeshighered.bsky.social · 18/09/2026Mark Carney calls for closer ties between Canada and Europe in both research and education. @seher-education.bsky.social reportstimeshighereducation.comCanada seeks to join Erasmus+ as EU ties deepenPrime minister Mark Carney calls for closer ties between Canada and Europe in both research and education 011
Reposted by Daniela BarillàPLOS Biology @plosbiology.org · 18/09/2026#Phages can evade #bacterial #immunity by disrupting #antiviral signals like cA3, triggering Panoptes defense systems. @mfwhite2.bsky.social &co show that Type II Panoptes detects cA3 loss and activates a CARF-TM effector to disrupt membranes & stop infection @plosbiology.org 🧪 buff.ly/1ixwg9v 194
Reposted by Daniela BarillàGavin Thomas (he/him) @gavinhthomas.bsky.social · 16/09/2026Next Wednesday we're running a live webinar on examining the genomes of examples of the 6 ESKAPE pathogens, using tools available in MORF Genomes. Come & learn about AMR gene and genomes using our visual browser-based tools. www.eventbrite.co.uk/e/how-superb...eventbrite.co.ukHow Superbugs Escape: Comparative Genomics of ESKAPE Pathogens with MORFDive into the sneaky world of superbugs and see how the MORF platform helps crack the code on ESKAPE pathogens' escape tricks. 045
Reposted by Daniela BarillàMalcolm White @mfwhite2.bsky.social · 16/09/2026Our paper on type II Panoptes is now published at PLOS Biology with new data on phage escapers - quite a step up in microbiology for our lab, led by Sabine Gruschow. Thanks to @erc.europa.eu for funding dx.plos.org/10.1371/jour... 14628
Reposted by Daniela BarillàNature @nature.com · 16/09/2026Asgard archaea, named for the realm of the Norse gods, changed scientists' views on the origins of eukaryotes go.nature.com/4h8rgZPgo.nature.comThese bizarre, much-coveted microbes are revealing the origins of complex lifeResearchers are racing to culture a menagerie of exotic organisms and finding lots of surprises along the way. 05717
Reposted by Daniela BarillàMartin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 13/09/2026Fold Spacer lets you fly through protein structures (Weekend project #2). It’s my first game: I originally set out to build a racer with structures as the tracks, but was a little too crazy. So it became this instead. You can upload your own structures. 🌐 martin-steinegger.github.io/Fold-Spacer/ 215759
Reposted by Daniela BarillàZeynep Baharoglu @zeynepbaharoglu.bsky.social · 12/09/2026Acquisition and erosion of toxin-antitoxin systems in bacterial chromosomes 🦠 academic.oup.com/mbe/advance-...academic.oup.comValidate User 0104
Reposted by Daniela BarillàMart Krupovic @mkrupovic.bsky.social · 11/09/2026Why did some #viruses evolve to be #giants while others did not? Our perspective piece on this topic with Eugene Koonin. www.pnas.org/doi/10.1073/...pnas.orgWhy did some viruses evolve to be giants while others did not? | PNASViruses are ubiquitous mobile genetic elements that are obligate symbionts of cellular life forms and replicate exclusively within host cells. The ... 09639
Reposted by Daniela BarillàMartial Marbouty @mmarbout.bsky.social · 30/08/2026🚨 ‼️ NEW PUBLICATION ‼️ While we start to know a lot about how bacterial genomes are organized in 3D, almost nothing is known about phage genome once it enters a bacterial cell. read the paper here: www.science.org/doi/10.1126/...science.orgBacteriophage PAK_P3 genome structuration and dynamics during infection of Pseudomonas aeruginosa reveal specific interaction patternsWhile the dynamic changes in genome organization in cellular organisms have been well described, the three-dimensional (3D) folding of phage genomes during the infection of their host is extremely lim... 04422
Reposted by Daniela BarillàDr Dr Oona Snoeyenbos-West @oonawest.bsky.social · 29/08/2026academic.oup.com/ismecommun/a...academic.oup.comAn enhanced domestication method for uncultured bacteriaAbstract. When environmental bacteria transition to laboratory conditions, a process termed domestication, the shift from the native habitat to a culture m 082
Reposted by Daniela BarillàGabriel Oka @okagu.bsky.social · 28/08/2026🧬 Happy to share our new preprint: ppigFinder, a desktop tool integrating bacterial genome analysis with large-scale AlphaFold 3 protein–protein interaction screening. We showcase it by exploring the VirD4 interactome of Xanthomonas citri. 💻 github.com/leepusp/ppig...github.comGitHub - leepusp/ppigfinderContribute to leepusp/ppigfinder development by creating an account on GitHub. 0114
Reposted by Daniela BarillàAgnes Noy @agnesnoy.bsky.social · 27/08/2026How do DNA duplexes recognize and pair with each other? Thomas Catley, Victor Velasco Berrelleza, @alicepyne.bsky.social and myself present the first direct visualization of DNA-DNA pairing mediated by divalent cations, confirming the decade-old DNA zipper model! doi.org/10.1093/nar/... 11411
Reposted by Daniela BarillàNature Reviews Molecular Cell Biology @natrevmcb.nature.com · 27/08/2026ICYMI: New Online! The use of homology-directed repair in a complex landscape of genome editorsdlvr.itThe use of homology-directed repair in a complex landscape of genome editorsNature Reviews Molecular Cell Biology, Published online: 24 August 2026; doi:10.1038/s41580-026-01018-3This Comment discusses the uses of Cas-induced homology-directed repair in the evolving landscape of highly specialized genome editing tools. 032
Reposted by Daniela BarillàMart Krupovic @mkrupovic.bsky.social · 26/08/2026Check out our paper on ESCRTs in large DNA viruses. Most enveloped viruses use the host #ESCRT for envelopment, but only mirusviruses and nucleocytoviricots encode it! Congrats @sonaida.bsky.social, @tomdelmont.bsky.social, Ulysse Guyet & Eugene Koonin. @pasteur.fr www.nature.com/articles/s41...nature.comLarge eukaryotic DNA viruses encode ESCRT machinery for membrane remodelling - Nature MicrobiologyA genomic screen reveals homologues of ESCRT components in mirusviruses that infect unicellular aquatic eukaryotes. 17225