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Craig Anderson

@craigandersn.bsky.social
201 followers 202 following 92 posts

Interested in DNA damage, mutations, adaptation and evolution. DKTK, DKFZ, LMU dktk.dkfz.de/en/research/dktk-resea… Munich, Germany

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Reposted by Craig Anderson
Ross Chapman @rosschapmanlab.bsky.social · 22h
Check out our latest, just out in @MolecularCell! We reveal how common, typically harmless forms of DNA damage synergise with DNA replication defects in ATM-deficient cells to drive tumour-specific responses to PARP inhibitors - We propose that a similar synergy may contribute to A-T pathogenesis.
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Raheleh Rahbari @r-rahbari.bsky.social · 18/09/2026
for this: What determines the risk of passing a new disease-causing mutation to a child? 🤔
cell.com
Mutation timing, accumulation, and selection in the male germline shape inheritance risk for developmental disorders
Neville et al. combine trio whole-genome sequencing with ultra-accurate sperm sequencing to quantify how de novo mutation timing and selection shape transmittable disease risk. Early embryonic mosaicism can create an uncommon elevated transmission risk, whereas universal age-associated mutation accumulation and spermatogonial selection account for most paternal pathogenic de novo mutations.
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Hannah Long @hannahlong.bsky.social · 17/09/2026
Deadline fast approaching for the Transcription and Chromatin UK meeting - 18-20 November 2026. Submit your abstract for this exciting meeting by tomorrow for a chance to present. Hope to see you in York! 🧬
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Barbara Hernando @bhernando.bsky.social · 12/09/2026
1/ NEW PAPER 🎉 🧵 We mapped the mutational processes shaping 959 prostate cancer genomes from the Pan Prostate Cancer Group (PPCG), integrating SBS, ID, CX and complex SV signatures. Eight footprints account for the processes in 85% of cases www.nature.com/articles/s41... @nature.com
nature.com
Integrated signatures define mutational processes in prostate cancer - Nature
Eight integrated mutational footprints collectively explain the mutational processes in 85% of primary prostate cancer genomes.
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Wellcome Sanger Institute @sangerinstitute.bsky.social · 11/09/2026
Read ‘Cancer treatment alters mutant selection in normal esophagus’ from @sangerinstitute.bsky.social, @cam.ac.uk, @ucl.ac.uk in @natgenet.nature.com here ⤵️ www.nature.com/articles/s41...
nature.com
Cancer treatment alters mutant selection in normal esophagus - Nature Genetics
Cancer treatment alters the selection of preexisting somatic mutations in the normal esophagus, including druggable mutants that confer treatment resilience to normal cells.
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Reposted by Craig Anderson
Wellcome Sanger Institute @sangerinstitute.bsky.social · 11/09/2026
Read ‘Extensive and differential platinum chemotherapy mutagenesis in livers of children’ from @sangerinstitute.bsky.social, @crick.ac.uk, @kingscollegelondon.bsky.social, and others in @science.org, here ⤵️ www.science.org/doi/10.1126/...
science.org
Extensive and differential platinum chemotherapy mutagenesis in livers of children
Childhood cancer survivors often experience late adverse effects that may be linked to chemotherapy mutagenesis. We studied chemotherapy mutagenesis in normal pediatric tissues using duplex sequencing...
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Craig Anderson @craigandersn.bsky.social · 11/09/2026
@erc.europa.eu I'm stoked for this year's SG awardees! But ERC, do me a favour and please be more flexible with you eligibility criteria. 🙏🙏🙏 I'm a year into my Junior position and can only apply for a consolidator grant- there's not much to consolidate! @crukpolicy.bsky.social set a fab example.
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Craig Anderson @craigandersn.bsky.social · 07/09/2026
I'm at the DNA Repair Meeting in Cologne for the next few days, come say hi 😀
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Reposted by Craig Anderson
Tom Sasani @tomsasani.bsky.social · 02/09/2026
How long does DNA damage last? @aaronquinlan.bsky.social and I found evidence that lesions are transmitted from parent (P0) to offspring (F1) in C. elegans. If they segregate unrepaired for multiple cell divisions, lesions generate multi-allelism in the F1 germline. www.biorxiv.org/content/10.6...
biorxiv.org
Inherited DNA damage generates multi-allelic mutations in C. elegans
Exogenous and endogenous mutagens generate a wide variety of DNA lesions, including bulky adducts, chemical modifications, and single- or double-stranded breaks. A phenomenon called “lesion segregation,” in which lesions evade repair and persist for multiple cell divisions, has recently been documented in tumors and healthy somatic tissues from mice and humans, respectively. Persistent lesions can generate multi-allelic variants (MAVs) by serving as templates for multiple rounds of error-prone replication. By reanalyzing data from a large C. elegans mutagenesis experiment, we observed robust evidence for MAVs at a small fraction (∼0.2%) of mutated sites in the offspring of strains treated with alkylating agents. Because these sequencing data were derived from the progeny of a single F1 animal — itself the offspring of a mutagenized P0 — all mutations should be biallelic. The presence of multi-allelic variation implies that some DNA lesions are transmitted to the F1 zygote, evade repair, and are repeatedly bypassed by error-prone polymerases during embryogenesis. We suspect that many more lesions are inherited than is suggested by MAV prevalence, and that a large fraction of biallelic mutations are also caused by inherited lesions. Our results demonstrate that DNA lesions serve as durable, transgenerational templates for mutagenesis in C. elegans . We speculate that lesion segregation in the early embryo may be a source of mosaicism and genetic diversity in humans, as well. ### Competing Interest Statement The authors have declared no competing interest. National Institutes of Health, https://ror.org/01cwqze88, R01HG012252
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Reposted by Craig Anderson
Inigo Martincorena @imartincorena.bsky.social · 03/09/2026
Big paper alert! This project has been years in the making. A comprehensive description of somatic mutation rates and signatures across 53 tissues or cell types using NanoSeq. A large collective effort led by Mimy Pham, Mike Stratton and @r-rahbari.bsky.social. www.biorxiv.org/content/10.6...
biorxiv.org
A comprehensive atlas of somatic mutation rates and mutational signatures in normal human cells
Over the course of a lifetime, somatic mutations accrue in normal human cells, causing variation in cell phenotype and engendering somatic evolution with outcomes ranging from the adaptive immune syst...
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Reposted by Craig Anderson
bioRxiv Genetics @biorxiv-genetic.bsky.social · 29/08/2026
Inherited DNA damage generates multi-allelic mutations in C. elegans www.biorxiv.org/content/10.64898/20…
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Jeffrey Townsend @jeffreytownsend.bsky.social · 27/08/2026
An exciting scientific collaboration 🧪 uncovered a gene–environment "collaboration" in colorectal cancer: an inherited MGMT variant predisposes tumors to alkylating DNA damage, red-meat intake amplifies it—and the damage it causes drives oncogenic KRAS mutations. #EvoDevo doi.org/10.1158/1055...
doi.org
Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer
AbstractBackground:. Red meat consumption is a risk factor for colorectal cancer and has been linked to tumor alkylating DNA damage. rs16906252-T is a cis expression quantitative trait locus variant a...
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Reposted by Craig Anderson
Kamila Naxerova @naxerova.bsky.social · 24/08/2026
Finishing your PhD or looking for a post-bac research position? We’re recruiting postdocs and research technicians to study somatic evolution! Come do interdisciplinary science in a friendly, collaborative environment at @harvardmed.bsky.social Genetics www.naxerova.hms.harvard.edu/contact
naxerova.hms.harvard.edu
Join Us — Naxerova Lab
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Sarah Aitken @s-j-aitken.bsky.social · 10/08/2026
🔬NEW PREPRINT🔬 Explainable machine learning relates histological to genomic pathology www.biorxiv.org/content/10.6... From John Connelly and Barbara Hernando @bhernando.bsky.social, co-led with Martin Taylor @mstaylor.bsky.social - along with others from #LCEConsortium #genomicPathology #ml #ai
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Barbara Hernando @bhernando.bsky.social · 10/08/2026
Check it now! 💫 Exited to share this preprint, the result of a fantastic collaboration between Sarah Aitken’s and Martin Taylor’s labs. During my secondment at @yalecancer.bsky.social @yalepathology.bsky.social, I contributed to explore how H&E images can be used to predict tumour genomics
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Rob Klose @robklose.bsky.social · 06/08/2026
Finally understand what COMPASS means! www.biorxiv.org/content/10.6...
biorxiv.org
COMPASS: Component-Wise Inference of Shared and Gene-Specific Perturbation Response
Predicting how a genetic perturbation reshapes a cell's transcriptome is a central goal of computational biology. Previous studies report that the mean response across training perturbations rivals sp...
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smahtnetwrk.bsky.social @smahtnetwrk.bsky.social · 06/08/2026
Accurate detection of somatic mutations is essential for studying mosaicism. This protocol describes CompDuplex-seq, a duplex sequencing method that combines genome-wide coverage with high accuracy using standard Illumina sequencing workflows. Learn more: www.protocols.io/view/compdup...
protocols.io
CompDuplex: Accurate detection of somatic mutations by duplex-seq with comprehensive genome coverage
CompDuplex: Accurate detection of somatic mutations by duplex-seq with comprehensive genome coverage. . Read full protocol, steps, and materials on protocols.io
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James Gagnon @james-gagnon.bsky.social · 04/08/2026
In a new (ish) preprint, we used CRISPR barcodes to label germline stem cell clones in zebrafish, then tracked their contributions to sperm production for 2 years. Instead of staying stable, individual clones rose, fell, and disappeared over time. www.biorxiv.org/content/10.6...
biorxiv.org
Clonal dynamics deviate from neutral drift in zebrafish spermatogenesis
Spermatogonial stem cells (SSCs) maintain male fertility, but how their clonal dynamics change with age remains poorly understood. Here, we use in vivo CRISPR barcoding in zebrafish to label SSCs and ...
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Reposted by Craig Anderson
Anna Poetsch @apoetsch.bsky.social · 03/08/2026
We are happy to present a new paper on the sequence dependence of 🧬 replication timing in the cell cycle. www.biorxiv.org/content/10.6... 🧵 1/6
biorxiv.org
Using Deep Learning to predict replication timing reveals baseline control of genomic DNA sequence
Human DNA replicates according to a precise schedule: certain regions are replicated early, while others replicate later in the cell cycle. The DNA sequence and the epigenome are both indicative for r...
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Reposted by Craig Anderson
Stirling Churchman @stirlingchurchman.bsky.social · 28/07/2026
RNA-seq tells us how much RNA is present in the cell. But to understand gene regulation, we need to easily measure the synthesis and decay rates driving this abundance. We introduce AIR-seq: analog intrinsic recoding sequencing. (1/6) www.biorxiv.org/content/10.6...
biorxiv.org
Analog intrinsic recoding measures RNA dynamics without chemical conversion
Steady-state RNA abundance measurements mask the synthesis and decay rates that shape gene expression. Analog intrinsic recoding sequencing (AIR-seq) repurposes the base-pairing properties of N4-hydro...
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Sarah Aitken @s-j-aitken.bsky.social · 27/07/2026
I’ve had the privilege of working with countless people over many years: doing (thousands) of experiments in the @odomlab.bsky.social, before joining forces with @paulflicek.bsky.social @nlbigas.bsky.social @csemple.bsky.social - and of course Martin Taylor @mstaylor.bsky.social and team. [11/14]
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Sarah Aitken @s-j-aitken.bsky.social · 27/07/2026
🧬NEW PAPER🧬 To what extent is cancer development deterministic? Does the germline genome affect that predictability? Find out in our #StrainDifferences paper @nature.com "Genetic background sets the trajectory of experimental cancer evolution" www.nature.com/articles/s41... 🧵[1/14]
nature.com
Genetic background sets the trajectory of experimental cancer evolution - Nature
Experimentally replaying tumour evolution in divergent mouse strains reveals the importance of interactions between genetic ancestry and acquired cancer-driving mutations in shaping the earliest stage...
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Craig Anderson @craigandersn.bsky.social · 22/07/2026
Fantastic to see this out. Everyone on it is fab and has produced an incredible resource @s-j-aitken.bsky.social @mstaylor.bsky.social @odomlab.bsky.social
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Reposted by Craig Anderson
smahtnetwrk.bsky.social @smahtnetwrk.bsky.social · 02/07/2026
How do somatic mutations accumulate in healthy tissues? This preprint analyzes nearly 12,000 normal samples across 25 tissues, uncovering ongoing mutagenic processes and providing a framework for studying somatic mutations in normal human cells. www.biorxiv.org/content/10.1...
biorxiv.org
Motif-Centered Analyses Reveal Universal and Tissue-Specific Mutagenic Mechanisms Operating in the Human Body
Somatic mutations are inevitable in human genomes and can lead to tumorigenesis, yet baseline mutagenesis in non-cancerous normal cells remain poorly understood. Here, we analyzed the mutation profile...
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Reposted by Craig Anderson
Dan Sarni @dansarni.bsky.social · 18/06/2026
What if DNA methylation changes aren’t just ticking of our biological clock but rather the rust breaking the gears? Very excited to share our work - how DNA methylation contributes to stem cell dysfunction and aging, published in @natgenet.nature.com doi.org/10.1038/s415... #epigenetics #aging 1/11
doi.org
A progeria syndrome links DNA hypermethylation to age-related pathology - Nature Genetics
This study investigates the consequences of hypermethylation in a progeria syndrome caused by gain-of-function DNMT3A mutations, finding effects on adult stem cell function.
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Kamila Naxerova @naxerova.bsky.social · 16/06/2026
Please join us in NH (perfect place to be in August!) for this inspiring conference organized by @petrovadmitri.bsky.social and Joy Bergelson. Very interdisciplinary, so I look forward to learning tons of new concepts. www.grc.org/function-of-...
grc.org
Function of Evolving Systems - Gordon Research Conferences
GRC presents Function of Evolving Systems, a conference on .
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Craig Anderson @craigandersn.bsky.social · 11/06/2026
Please help me find a great student! I have a PhD position in my lab in Munich, looking at the dynamics of DNA damage and repair from chemotherapy: jobs.dkfz.de/en/jobs/1686... The application deadline is 02.07.26 @dkfz.bsky.social @lmu-klinikum.bsky.social
jobs.dkfz.de
PhD Student in Mutagenic Chemotherapy Driving Treatment Resistance
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Molly Przeworski @mollyprz.bsky.social · 09/06/2026
Now published: journals.plos.org/plosbiology/...
journals.plos.org
What sets the mutation rate of a cell type in an animal species?
Mutation rates per generation are strikingly similar across germlines of animals and across at least one somatic cell type, suggesting a key role for natural selection in shaping mutation rates. This ...
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Nature Reviews Genetics @natrevgenet.nature.com · 01/06/2026
FYI: New online! Evolutionary genetics of ageing
dlvr.it
Evolutionary genetics of ageing
Nature Reviews Genetics, Published online: 11 May 2026; doi:10.1038/s41576-026-00959-xModern humans increasingly live long enough to experience late-life consequences of genetic and molecular systems shaped by natural selection. In this Review, the authors integrate evolutionary genetics and genetic evidence to explain why ageing evolves, why longevity varies across species and individuals, and how these insights inform healthspan extension.
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Martin Taylor @mstaylor.bsky.social · 26/05/2026
Interested in DNA damage and the mechanisms of mutagenesis? We are hiring post-doctoral scientists as part of the amazing CAUSE Cancer Grand Challenge team. Biochemistry, genomics and computational biology... tinyurl.com/yc5xs3wa tinyurl.com/4unu5uu9 CAUSE www.cancergrandchallenges.org/cause
Cancer Grand Challenges - Team CAUSE logo
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Anna Poetsch @apoetsch.bsky.social · 18/05/2026
We are looking for a Data and IT manager. You would set up the group’s data infrastructure, data flows, and overall organization on HPC. We aim to understand genomes 🧬 and ageing 👵 with Big Data and Machine / Deep Learning. Interested? Please apply through jobportal.uni-koeln.de/ausschreibun...
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Nature Reviews Genetics @natrevgenet.nature.com · 18/05/2026
Complementing our recent #Review 'Charting single-cell lineages with synthetic and natural barcodes' by @alejofraticelli.bsky.social & Victoria Parreno (rdcu.be/e50gy), Kun Wang, Xionglei He & Zheng Hu review 'Computational approaches for multimodal lineage tracing': go.nature.com/4nDGGbk
go.nature.com
Computational approaches for multimodal lineage tracing - Nature Reviews Genetics
Multimodal lineage tracing links heritable ancestry with single-cell molecular states to reveal how cell fates emerge during development, regeneration and disease. In this Review, the authors survey k...
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Barbara Marte @barbmarte.bsky.social · 14/05/2026
new out in Nature www.nature.com/articles/s41...
nature.com
Ecotypes of triple-negative breast cancer in response to chemotherapy - Nature
Treatment data for triple-negative breast cancer show the importance of macrophage subtypes and cancer-cell metaprograms for interferon signalling, HLA expression and cell cycle activity that are asso...
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Kamila Naxerova @naxerova.bsky.social · 06/05/2026
A gene is recurrently mutated in cancer. But do these mutations really cause the disease? Or are they merely selected during normal tissue evolution? Postdoc D. Cheek had the creative idea to use patient ages to try and answer this question. Read new paper out here: www.nature.com/articles/s41...
nature.com
Age distinguishes selection from causation in cancer genomes - Nature Genetics
Mutations may be enriched in tumor samples because they promote carcinogenesis or because they promote clonal expansions in healthy tissue. This study mathematically disentangles these two possibiliti...
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EvolDir @evoldir.bsky.social · 21/04/2026
📣 EvolDir is now managed by @eseb.bsky.social! We are delighted to be taking the reins and express our gratitude to both Brian Golding who began this service to the community in the mid-1980s and to @rdmpage.bsky.social who ran this account until now 👏 You can now find evoldir here: evoldir.net
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Inigo Martincorena @imartincorena.bsky.social · 15/04/2026
Excited to share our latest work in Nature. Applying single-molecule and single-cell DNA sequencing methods, we uncover an extraordinary landscape of somatic mutations in immune checkpoint genes in autoimmune B cells, suggesting that somatic mutations may be key to autoimmunity [1/n] rdcu.be/fdqbr
rdcu.be
Polyclonal selection of immune checkpoint mutations in thyroid autoimmunity
Nature - Polyclonal selection of immune checkpoint mutations in thyroid autoimmunity
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Alex Cagan @atjcagan.bsky.social · 13/04/2026
Caroline Watson gives the first talk at the Mutations in Time and Space conference on the evolutionary road to AML #MITS2026
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Craig Anderson @craigandersn.bsky.social · 15/04/2026
Pei-Chi Wei from @dkfz.bsky.social is the last speaker for Mutations in Time and Space 2026. Thanks to everyone who made it such a phenomenal meeting #MITS26
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Craig Anderson @craigandersn.bsky.social · 14/04/2026
Great talk!! @imartincorena.bsky.social #mits26 Can't wait to read the paper: www.nature.com/articles/s41...
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Craig Anderson @craigandersn.bsky.social · 12/04/2026
I'm currently on my way to Hinxton for Mutations in Time and Space 2026. The attendee list is insane and I can't wait to see everyone- it's going to be a thrilling few days! #MITS26 coursesandconferences.wellcomeconnectingscience.org/event/mutati...
coursesandconferences.wellcomeconnectingscience.org
Mutations in Time and Space — 20260413
Mutations in Time and Space
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bioRxiv Genomics @biorxiv-genomic.bsky.social · 24/02/2026
In vivo lineage tracing across human tissues using methylation barcodes in the protocadherin gene cluster www.biorxiv.org/content/10.64898/20…
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Björn Schumacher @bjornschumacher.bsky.social · 22/02/2026
🧬🧬🧬 REGISTRATION JUST OPENED! Make sure you join our DNA REPAIR MEETING 2026 ON PHYSIOLOGICAL CAUSES AND CONSEQUENCES OF GENOME INSTABILITY in Cologne, September 7-9, organized by the German Society for DNA Repair (DGDR) and the @dfg.de Research Unit 5504. www.for-5504.com/en/197/Confe...
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Craig Anderson @craigandersn.bsky.social · 13/01/2026
The abstract deadline for Mutations in Time and Space 2026 closes in 3 weeks time. Sign up here: coursesandconferences.wellcomeconnectingscience.org/event/mutati... As well as thrilling science, the programme includes dinner at the beautiful King's College in Cambridge. @eventswcs.bsky.social
coursesandconferences.wellcomeconnectingscience.org
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Nature @nature.com · 03/12/2025
Nature research paper: Decay of driver mutations shapes the landscape of intestinal transformation go.nature.com/49VIh7w
go.nature.com
Decay of driver mutations shapes the landscape of intestinal transformation - Nature
The order in which driver mutations of colorectal cancer occur in intestinal epithelium can determine whether clones are positively or negatively selected and can shape subsequent tumour development.
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Elias Friman @eliasfriman.bsky.social · 07/01/2026
For those interested in cooperativity within and between enhancers, @wbickmor.bsky.social and I wrote a mini-review and perspective, inspired by the many recent papers on this topic. doi.org/10.1016/j.gd...
doi.org
Redirecting
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bioRxiv Genomics @biorxiv-genomic.bsky.social · 30/12/2025
Somatic and germline mutational processes across the tree of life www.biorxiv.org/content/10.64898/20…
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Raheleh Rahbari @r-rahbari.bsky.social · 09/12/2025
www.nature.com/articles/s41...
nature.com
Spatial architecture of development and disease - Nature Reviews Genetics
Spatial omics has empowered the discovery of developmental and disease-associated molecular signatures, cell states and multicellular niches, as well as the evaluation of disease heterogeneity within ...
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Aaron Quinlan (he/him) @aaronquinlan.bsky.social · 02/12/2025
We are thrilled to announce the first official release (v0.1.8) of #𝗯𝗲𝗱𝗱𝗲𝗿, the successor to one of our flagship tool, #𝗯𝗲𝗱𝘁𝗼𝗼𝗹𝘀! Based on ideas we conceived of long ago (!), this was achieved thanks to the dedication of Brent Pedersen. 1/n
quinlanlab.org
Intro to Bedder – The Quinlan Lab
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Barbara Marte @barbmarte.bsky.social · 26/11/2025
new out in Nature www.nature.com/articles/s41...
nature.com
Polyclonal origins of human premalignant colorectal lesions - Nature
Nature - Polyclonal origins of human premalignant colorectal lesions
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Duncan Sproul @sproullab.bsky.social · 25/11/2025
🚨 Multiple #PhD opportunities for lab or computational applicants. Do you want to understand the molecular basis of #epigenetic dysfunction in human disease? Come work with our group at the fantastic, collaborative @uoe-igc.bsky.social in a beautiful, liveable city. 🧵 1/4 Please repost 🙏
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