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Ben Sabari

@bsabari.bsky.social
1.3K followers 155 following 39 posts

Associate Professor at UTSW studying nuclear organization by nuclear condensates

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Reposted by Ben Sabari
Wendy Bickmore @wbickmor.bsky.social · 08/09/2026
It was great working with students Kun and Ryan and @hannahlong.bsky.social, combing the literature to try and find examples of bona fide disease-causing variants in non-coding elements - promoters, enhancers and silencers. www.nature.com/articles/s41...
nature.com
Mechanisms underlying disease-causing variants in promoters and enhancers - Nature Genetics
This Review discusses how rare-disease-causing variants in the noncoding genome impact gene regulation, why these examples are so few and how new approaches could accelerate discovery of noncoding var...
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Seychelle Vos @voslab.org · 08/09/2026
⚡Preprint alert⚡ So proud of @amohamed98.bsky.social! Abdallah determined the cryo-EM structure of BRD4 bound to the kinase P-TEFb, defining the molecular basis of this key transcription interaction — and revealing that BRD4 and AFF4 binding are mutually exclusive to P-TEFb. Lots more inside 👇
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Krishna Shrinivas @shrinivaslab.bsky.social · 07/07/2026
This is now published in PNAS! And double-treat, we also made the cover :) www.pnas.org/doi/10.1073/...
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Ben Sabari @bsabari.bsky.social · 25/06/2026
Congratulations to former grad student @heankel.bsky.social on being selected as a 2026 Jane Coffin Childs Fellow!
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brainresilience.bsky.social @brainresilience.bsky.social · 24/06/2026
Congratulations to Heankel Lyons @heankel.bsky.social on being named a 2026 #JCCFellow! Lyons is a Wu Tsai Neuro Postdoc Scholar on the Brain Resilience Track. She studies how TDP-43—a protein linked to ALS—regulates gene expression in healthy motor neurons in Aaron Gitler's Lab.
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Heankel Lyons @heankel.bsky.social · 24/06/2026
Thank you 🙏🏼!! So grateful for this award from JCC to support my research on transcription dysregulation in ALS. And so lucky to join the JCC community! Thanks to my mentors Aaron Gitler (postdoc) and @bsabari.bsky.social (PhD). And Jim Shorter + Mike Rosen for supporting my application.
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Jordan Meier @doc-jlmeier.bsky.social · 16/06/2026
Excited to announce that our research group will be joining the St. Jude Children's Research Hospital Department of Chemical Biology & Therapeutics in September. 🥼 🧬 🧪 @stjuderesearch.bsky.social
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Christine Mayr @christinemayr.bsky.social · 08/06/2026
Finally out in @Cellcellpress! Proteins with long IDRs are prone to misfolding during protein synthesis. This is prevented by mRNA 3′UTRs that act as mRNA-based IDR chaperones. www.cell.com/cell/fulltex...
cell.com
mRNA 3′ UTRs chaperone intrinsically disordered regions to control protein activity
Highly conserved mRNA 3′ UTRs act as co-translational chaperones for intrinsically disordered regions (IDRs), preventing inter-domain misfolding and enabling biogenesis of fully active proteins.
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Jon Henninger @jhenninger.bsky.social · 08/06/2026
Excited to share the first pre-print from our lab!! Check it out here! www.biorxiv.org/content/10.6... We found that many RNA-binding proteins canonically understood to regulate RNA processing can also function like transcription factors and cofactors to directly regulate transcription.
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Jon Henninger @jhenninger.bsky.social · 03/06/2026
See our handy graphical abstract and article for free here: bit.ly/4vsl845
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Peter Ly @peterlylab.bsky.social · 29/05/2026
Proud milestone for our lab – Congrats to our first two graduate students, Lizz Maurais, PhD, and Justin Engel, PhD (@justeng95.bsky.social)! We also celebrated Lizz’s last day as she moves on to an exciting new adventure. Good luck Lizz!
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Roberto Vázquez Núñez @robertovn.bsky.social · 29/05/2026
🚨 New preprint: GATO-seq did it again! ELOF1 is the missing promoter-proximal factor that confers RNA Pol II resistance to TFIIF. Including ELOF1, DSIF, and NELF in GATO-seq reactions recapitulates promoter-proximal pausing in vitro at physiological conditions for the 1st time. tinyurl.com/ELOF1
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Seychelle Vos @voslab.org · 29/05/2026
⚡New preprint from the lab⚡: A key early checkpoint in gene expression is promoter proximal pausing of RNA polymerase II. For over 20 years, we as field have not been able to recreate pausing under realistic cellular conditions. @robertovn.bsky.social shows that ELOF1 is the missing piece.
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Krishna Shrinivas @shrinivaslab.bsky.social · 28/05/2026
Our work made the cover! (and my very first one!) Congrats to co-authors as well as Ramanna Shrinivas for cover art and @natcomputsci.nature.com for editing/cover design.
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Ben Sabari @bsabari.bsky.social · 22/05/2026
Congratulations Dr. Mikayla Eppert!
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Peter Ly @peterlylab.bsky.social · 19/05/2026
Excited to share our latest paper! We found that large pieces of the human genome can transfer between cells upon direct contact, endowing recipient cells with heritable phenotypic changes. @cp-cell.bsky.social (1/7) www.cell.com/cell/fulltex...
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Takashi Fukaya @fukayalab.bsky.social · 03/05/2026
New preprint alert! Together with Tetsuya Yamamoto at Hokkaido University, we propose a “polymer micelle” model of transcriptional bursting. www.biorxiv.org/content/10.6...
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Walter W. Chen, MD, PhD @walterwchen.bsky.social · 22/04/2026
Thrilled to share that I’ll be starting my lab as an Assistant Professor and Endowed Scholar in the UT Southwestern Molecular Biology Dept this Fall! 🥳 We’ll study #peroxisomes #mitochondria #metabolism via the lens of neonatology 👶🏻, a very exciting frontier in medicine! #neotwitter
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The Lewis Lab @peterlewislab.bsky.social · 22/03/2026
Happy 30th birthday to this paper published March 22, 1996, one of the studies that moved chromatin biology from correlation toward mechanism. Brownell et al. linked a transcription-associated Tetrahymena HAT to yeast Gcn5p, providing a biochemical link for chromatin modification to gene activation.
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Tugce Aktas @aktast.bsky.social · 25/02/2026
Our most recent work on the “function and evolution” of #nuclear-speckles is now online at Cell @cp-cell.bsky.social doi.org/10.1016/j.ce... Read the thread👇 for the highlights of our findings.
doi.org
Redirecting
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David W. Sanders! @davidwsanders.bsky.social · 25/02/2026
The function of nuclear speckles is revealed! This is an incredibly important paper with absolutely beautiful data! Wow! www.cell.com/cell/fulltex...
cell.com
Nuclear speckles enable processing of RNA from GC-rich isochores
Nuclear speckles are key subnuclear structures that regulate gene expression in GC-rich regions. This work shows that the evolution and expansion of core speckle proteins were crucial for the increase...
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Alex Holehouse @alexholehouse.bsky.social · 12/02/2026
Pleased to share the final version of this behemoth of a paper, now finally published. I guess I can retire now? www.nature.com/articles/s41... More functional data, many thousands of words removed, and a few other updates from last year's preprint.
nature.com
Sequence and chemical specificity define the functional landscape of intrinsically disordered regions - Nature Cell Biology
Langstein-Skora, Schmid, Huth et al. propose that intrinsically disordered region functionality can be driven by the interplay between linear binding motifs and contextual chemical characteristics suc...
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Alexis Verger 🧬🧫🧪 @alexis-verger.cpesr.fr · 11/02/2026
3️⃣4️⃣ Robert G. Roeder collecting sea urchings, the organism in which eukaryotic RNA Pols I, II and III were discovered (source : youtu.be/efNtZyXSHC4?...)
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Seychelle Vos @voslab.org · 09/02/2026
🧪🧬New preprint We present cryo-EM structures of reconstituted CTCF–nucleosome complexes, showing CTCF dimerization drives nucleosome oligomerization into defined higher-order assemblies. Disrupting CTCF–CTCF interfaces in mESCs reduces looping and impairs differentiation. tinyurl.com/CTCF-nucleos...
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Ben Sabari @bsabari.bsky.social · 06/02/2026
I am excited to share a new review @cp-molcell.bsky.social written in collaboration with @tanjamittag.bsky.social , Mikayla Eppert, and Ambuja Navalkar where we review the current evidence for and against the role of density transitions in regulating transcription www.cell.com/molecular-ce...
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Alexis Verger 🧬🧫🧪 @alexis-verger.cpesr.fr · 06/02/2026
Now published in @science.org www.science.org/doi/10.1126/...
science.org
Live-cell single-molecule dynamics of eukaryotic RNA polymerase machineries
Eukaryotic gene expression is orchestrated by RNA polymerases (RNAPI, II, and III) and associated factors, yet their real-time dynamics remain obscure. Using single-molecule tracking in living yeast, ...
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Takashi Fukaya @fukayalab.bsky.social · 05/02/2026
New preprint from the lab! We identify the ZnF protein Mulberry as a condensation-dependent structural regulator of genome topology that organizes “multi-way regulatory hubs” in early Drosophila embryos. www.biorxiv.org/content/10.6...
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IDPSeminars @idpseminars.bsky.social · 04/02/2026
IDPSeminas is back again TOMORROW! Talks from Lucia Strader (@luciastrader.bsky.social) and Heather Meyer! Sign up at idpseminars.com. Talks start at 1 pm EST / 7 PM CET!! Come learn about transcriptional adaptation and IDRs as environmental sensors and accuators!
Poster showing program for IDPSeminars on Feb 5th. Talks are:

Lucia Strader: IDR sequence features of activation domains
Heather Meyer: IDPs as environmental sensors and actuators in plants
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Ben Sabari @bsabari.bsky.social · 23/01/2026
I am recruiting postdoctoral fellows to develop new research directions in the lab. We study transcriptional regulation through biomolecular condensates in development and disease, with an emphasis on first-principles and mechanistic discovery. Please repost or share with colleagues.
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Alex Stark @alex-stark.bsky.social · 30/12/2025
Activator-promoter compatibility in mammals - Hcfc1 is a key and intrinsically CGI-promoter-specific co-activator that cannot activate non-CGI promoters. Lead by @nemcko.bsky.social & Kevin Sabath in collab. with @plaschkalab.bsky.social @impvienna.bsky.social www.biorxiv.org/content/10.6... (1/2)
biorxiv.org
Activator-promoter compatibility in mammals: a CpG-Island-specific co-activator directly bridges transcription factors to TFIID
Transcription from CpG island (CGI) promoters controls the expression of two-thirds of mammalian genes, yet despite their prevalence, it remains unknown whether CGI-specific co-activators with intrins...
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Filip Nemcko @nemcko.bsky.social · 29/12/2025
Do transcriptional activators work on any promoter? Our data says no. 🙅‍♂️ Despite driving ~2/3 of mammalian genes, CpG island (CGI) promoters have remained a puzzle. We identified >50 activators that are exclusively compatible with this promoter class. 🧬
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SFB 1551 - Collaborative Research Centre 1551 @sfb1551.bsky.social · 18/11/2025
🎉Publication alert🎉 Congratulations to @lemkelab.bsky.social, @wittmann-lab.bsky.social, Girard Lab & their teams on their new Nature Communications publication. This work showcases the active cross-disciplinary dialogue that lies at the heart of our network. www.nature.com/articles/s41...
nature.com
Differential conformational expansion of NUP98-HOXA9 oncoprotein from nanosized assemblies to macrophases - Nature Communications
Some transcription factors can organize into different structural states, from small nanoscale clusters to macrophases. Here authors show that NHA9 undergoes differential conformational expansion acro...
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Di Jiang @dijiang319.bsky.social · 05/12/2025
@science.org 🧬🔬 Multiscale structure of #chromatin condensates explains phase separation and material properties | Science www.science.org/doi/10.1126/... @janhuemar.bsky.social et al.
science.org
Multiscale structure of chromatin condensates explains phase separation and material properties
The structure and interaction networks of molecules within biomolecular condensates are poorly understood. Using cryo–electron tomography and molecular dynamics simulations, we elucidated the structur...
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Rosana Collepardo @rcollepardo.bsky.social · 05/12/2025
Our Science paper is out! Huge congratulations to @huabin-zhou.bsky.social, Mike Rosen, and the brilliant @janhuemar.bsky.social @juliamaristany.bsky.social and @kieran-russell.bsky.social from our group News: bit.ly/4avnkAr and bit.ly/3XBGVHS Great perspective by @vram142.bsky.social +K Zhang
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Alex Holehouse @alexholehouse.bsky.social · 01/12/2025
Love this; inspired by early experiences and cemented by the incomparable @jiwasa.bsky.social at an incredible workshop she and @theroglab.bsky.social organized in '22, I've become thoroughly convinced that - at least for me - developing figures from scratch is a key part of scientific inquiry.
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EMBL @embl.org · 27/11/2025
Anthony A. Hyman will become EMBL’s next Director General. He joins EMBL from @mpi-cbg.de in Dresden. He is also Professor of Molecular Biology @tudresden.bsky.social, and was a group leader at EMBL Heidelberg from 1993 to 1999. www.embl.org/news/people-...
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Peter Ly @peterlylab.bsky.social · 05/11/2025
6 years ago, Lizz took a leap of faith by moving across the country to join our new and empty lab as a research tech. She then became our 1st grad student, playing a major role in shaping our research directions and lab culture. Today she defended her PhD, and I couldn’t be more proud.
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Josh Riback @superscijew.bsky.social · 04/11/2025
(1/10) How do diverse leukemia mutations converge on the same molecular program? In #RibackLab first manuscript @cp-cell.bsky.social, collaboration with @goodell-lab.bsky.social shows that disparate mutations rewire shared protein networks to form nuclear condensates called C-bodies.
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Eric Topol @erictopol.bsky.social · 29/10/2025
What do the naked mole rat and bowhead whale (lives to ~200 years) have in common to explain their remarkable longevity? Enhanced DNA repair www.nature.com/articles/s41... erictopol.substack.com/p/a-long-awa...
nature.com
Evidence for improved DNA repair in long-lived bowhead whale - Nature
Analysis of the longest-lived mammal, the bowhead whale, reveals an improved ability to repair DNA breaks, mediated by high levels of cold-inducible RNA-binding protein.  &nbs...
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Ben Sabari @bsabari.bsky.social · 22/10/2025
In collaboration with Hue Sun Chan and @jonaswessen.bsky.social, we present a polymer theory for sequence-based prediction of selective partitioning of charged IDRs. This method correctly predicted the partitioning of IDRs for which we had no experimental data. www.nature.com/articles/s42...
nature.com
Sequence-based prediction of condensate composition reveals that specificity can emerge from multivalent interactions among disordered regions - Communications Chemistry
Condensates composed of the disordered region of the mediator of RNA polymerase II transcription subunit 1 (MED1) are known to partition specific proteins, but whether this specificity arises from ord...
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Krishna Shrinivas @shrinivaslab.bsky.social · 10/10/2025
Happy to share our latest in @natcomputsci.nature.com led by (amazing) Ryan Krueger + colab w M. Brenner! We introduce a framework to directly design intrinsically disordered proteins (IDPs) from physics-based simulations. 🧬 doi.org/10.1038/s435... 📰 www.mccormick.northwestern.edu/news/article...
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Alex Holehouse @alexholehouse.bsky.social · 29/09/2025
Last week, Washington University made the perhaps questionable decision to award me tenure.
Lab picture of Holehouse lab members past and present
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Krishna Shrinivas @shrinivaslab.bsky.social · 22/09/2025
Preprint! Inspired by condensates that form on specific DNA, we ask: can we design multicomponent fluids to form distinct condensates on diff. surfaces? i.e. perform classification by condensation ⚛️ 💻 exploiting phase transitions beyond compartmentalization! arxiv.org/abs/2509.08100 (1/2)
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GBM (Gesellschaft für Biochemie und Molekularbiologie) @gbmev.bsky.social · 18/09/2025
Congratulations to the Fritz Lipmann Lecturer Michael Rosen (Dallas) by the GBM president Harald Kolmar.
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Bede Portz @ysptsps.bsky.social · 11/09/2025
Major Medical Prizes Given to Cell Biology and Cystic Fibrosis Pioneers www.nytimes.com/2025/09/11/h...
nytimes.com
Major Medical Prizes Given to Cell Biology and Cystic Fibrosis Pioneers
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Krishna Shrinivas @shrinivaslab.bsky.social · 04/09/2025
New in @pnas.org with @gladfelterlab.bsky.social @sneadlab.bsky.social ! 📢 Cells use condensates (dynamic compartments without membranes) to organize key reactions. Some condensates have core & shell layers… but how do such layers form? 🤔 👉 pnas.org/doi/10.1073/pnas.2504778122 (1/6)
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Lucia Strader @luciastrader.bsky.social · 25/08/2025
The lab is moving to the Salk Institute! We are thrilled to join an inspiring community where we will continue to explore plant growth and development. Deep gratitude for the years of support and collaboration at Duke/NCSU/UNC. www.salk.edu/news-release...
salk.edu
Plant biologist Lucia Strader joins Salk faculty to study plant growth signaling - Salk Institute for Biological Studies
LA JOLLA—The Salk Institute will welcome plant biologist Lucia Strader as a new professor and holder of the Howard H. and Maryam R. Newman Chair in Plant Biology in October 2025. Strader is an interna...
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Xu Zhou lab @ BCH & HMS @xuzhoulab.bsky.social · 22/07/2025
Beyond excited to share our #NewPaper in @cellcellpress.bsky.social! Inflamed environments acidify intracellular #pH. BRD4 senses this via transcriptional condensates, tuning #macrophage responses to match demand and consequences of #inflammation authors.elsevier.com/sd/article/S...
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Waggoner Lab @labwaggoner.bsky.social · 17/07/2025
Designed protein pockets recognize intrinsically disordered protein regions @science.org www.science.org/doi/10.1126/... www.science.org/doi/10.1126/... www.statnews.com/2025/07/17/n...
science.org
Disorder meets its match
Designed protein pockets recognize intrinsically disordered protein regions
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