Reposted by Alex SolivanKranzusch Lab @kranzuschlab.bsky.social · 17/09/2026New enzymes that create natural phosphorothioate modifications in RNA share homology with proteins in bacterial DndABCDE anti-phage defense! www.cell.com/cell/abstrac... 14319
Reposted by Alex SolivanJeremy Baskin @jeremybaskin.bsky.social · 06/08/2026Thrilled to share our new work, co-developed w/Adrian Salic's lab: bioorthogonal probes for labeling PE, a multifunctional membrane lipid and source of important protein modifications. Congrats to Yuan-Ting Cho, Brittany White-Mathieu, Jade Xia, & Cindy Jao! onlinelibrary.wiley.com/doi/10.1002/...onlinelibrary.wiley.comBioorthogonal Tools for Ethanolamine Lipids and Protein ConjugatesAn alkyne-tagged ethanolamine analog (AlkEA) enables bioorthogonal, metabolic labeling of endogenous phosphatidylethanolamine (PE) and its protein modifications. AlkEA is incorporated into PE via the... 03913
Reposted by Alex SolivanLandon Getz @landongetz.bsky.social · 06/08/2026DNA glycosylases are repair enzymes, essential to all cellular life. They find chemically damaged bases and remove them so DNA can be repaired. Today in Nature Microbiology, we show bacteria have repeatedly repurposed them into antiviral immune systems 🧵 www.nature.com/articles/s41...nature.comAntiviral defence is a conserved function of diverse bacterial DNA glycosylases - Nature MicrobiologyDNA glycosylases, typically used for DNA repair, can also protect bacteria against phages that would otherwise evade host immunity by incorporating modified bases into their genomes. 38139
Alex Solivan @alexsolivan.bsky.social · 04/08/2026As someone’s whose chemistry is almost always colorless or an ugly yellow, I was not prepared for the sheer dread one could feel when a nice colorful reaction suddenly turns the *wrong* color before your very eyes… #chemsky 130
Reposted by Alex SolivanCarolyn Bertozzi @carolynbertozzi.bskyverified.social · 29/07/2026Cool method for nano pore based peptide sequencing, nice use of copper-free click chemistry as well! www.nature.com/articles/s41...nature.comSequential reading of a stepwise-shortened peptide immobilized on nanopore - NatureA nanopore-based ‘chop and measure’ method sequences peptides at single-amino-acid resolution by using enzymatic digestion to progressively shorten the N terminus one residue at a time,... 24614
Alex Solivan @alexsolivan.bsky.social · 28/07/2026Random professional development question for the community but at what stage do people stop asking their undergrad PI for LORs? Like as a rising 4th year looking at F-series NIH grants, would it be odd if one of my letters came from my undergrad PI or am I overthinking this…? 621
Reposted by Alex SolivanGreen Lab JHMI @greenlab.bsky.social · 24/07/2026Wait, what?! This isn’t about ribosomes? Check out our new work where we find that a #Legionella effector thought to target host translation instead targets metabolism by modifying a host glycolytic metabolite. Led by @drjoshblack.bsky.social www.cell.com/molecular-ce...cell.comThe Legionella pneumophila effector SidL is an adenylyltransferase that modifies the glycolytic intermediate 3-phosphoglycerateBlack et al. identify the L. pneumophila effector SidL as an adenylyltransferase that targets host glycolysis. SidL covalently modifies the glycolytic intermediate 3-phosphoglycerate (3PG) with AMP, g... 02512
Alex Solivan @alexsolivan.bsky.social · 26/06/2026Strong candidate for paper of the year in my opinion 👀 010
Reposted by Alex SolivanJeff Martell @jeffmartell.bsky.social · 17/06/2026Check out this awesome paper from @neugmonicaelena.bsky.social on a new family of nickel pincer enzymes! www.nature.com/articles/s41...nature.comDiscovery and characterization of a nickel enzyme family that catalyses intermolecular hydride shuttling - Nature ChemistryThere is limited understanding of nickel-catalysed chemistry in nature. Now a bioinformatic pipeline reveals a structurally distinct family of nickel pincer nucleotide-dependent enzymes. Nickel pincer... 0126
Reposted by Alex SolivanNSF C-GEM @cgemcci.bsky.social · 11/06/2026✨ New preprint from C-GEM: Altering the ribosome exit tunnel to improve consecutive incorporation of challenging monomers Link: www.biorxiv.org/content/10.6... This paper is a fantastic collaboration between the Cate and Schepartz labs catalyzed by C-GEM. #NSFfundedbiorxiv.orgAltering the ribosome exit tunnel to improve consecutive incorporation of challenging monomersRibosomes are capable of incorporating a wide array of natural and unnatural monomers into growing polymer chains, but can be stalled by monomers with constrained or non-natural backbones. Here we eva... 053
Reposted by Alex SolivanTobias Warnecke @tobiaswarnecke.bsky.social · 11/06/2026Archaea are the hornets of the microbial world. Discuss. www.biorxiv.org/content/10.6... TLDR: Archaeon kills bacterium with secreted phospholipase. Pretty nifty way to kill bacteria for a microbe with a very different lipid make-up, I reckon. No need to worry about accidentally killing yourself.biorxiv.org 24017
Reposted by Alex SolivanRyan Flynn @raflynn5.bsky.social · 28/05/2026Happy to share a new review: Functional Inclusion of RNA Biology in the Tethered Extracellular Matrix We discuss the emerging interface of RNA biology and the ECM. The way biology solved protein-HS interactions is very similar to RNA-protein! wires.onlinelibrary.wiley.com/doi/10.1002/... 1258
Reposted by Alex SolivanJackson Cahn @jkbcahn.bsky.social · 07/05/2026This is the big one! So proud to have played a part on this team. www.science.org/doi/10.1126/... Enlicitide is an exciting potential molecule for cardiovascular disease, but if we were going to make it on a commercial scale, existing chemical techniques just weren't going to cut it.science.orgBiocatalytic cascades enable manufacture of the macrocyclic peptide enlicitideHistorically, many compelling therapeutic targets have been accessible only by injectable biologic drugs. Macrocyclic peptides, such as the proprotein convertase subtilisin/kexin type 9 inhibitor enli... 13914
Reposted by Alex Solivanlaurelrobbins.bsky.social @laurelrobbins.bsky.social · 05/05/2026I’m thrilled to share an update to our work on bacterial NACHT domain containing proteins! In our last preprint, we reported that bNACHT11 is activated by multiple phage proteins. We’ve now expanded this work with structural insight and investigation of programmed cell death following activation.biorxiv.org 23520
Reposted by Alex SolivanHarris Wang @harriswang.bsky.social · 01/05/20261/ Excited to share our new paper in Science @science.org: “Toward life with a 19-amino acid alphabet through generative artificial intelligence design.” A great collab w/ Sergey's group @sokrypton.org at MIT @columbiasysbio.bsky.social science.org/doi/10.1126/... 🦠🧬🛠️🖥️💥science.orgToward life with a 19–amino acid alphabet through generative artificial intelligence designBecause all known living organisms are made from at least 20 canonical amino acids, the feasibility of life using a more simplified alphabet remains unclear. In this work, we leveraged computational d... 711728
Reposted by Alex SolivanCress Lab @cresslab.bsky.social · 30/04/2026Our lab is proud to present our latest work harnessing Bridge Recombinase for genome-scale editing in diverse bacteria, microbiome editing, and programmable horizontal gene transfer. 69851
Reposted by Alex SolivanKenneth Loi @kenjmloi.bsky.social · 27/04/2026Excited to share our discovery of a new programmable RNA-guided DNA-targeting system hiding inside bacteriophages that predates CRISPR. We call it VIPR (Viral Interference Programmable Repeat), and it uses an entirely new logic to find its targets. Thread + link below. 7448197
Reposted by Alex SolivanJohannes Morstein @morstein.bsky.social · 27/04/2026Excited to share the first study from the Morstein Lab on a new approach that enables selective editing, tagging, and visualization of mammalian lipids www.biorxiv.org/cgi/content/... #chembio #lipidtime @caltech.edu @caltechcce.bsky.social @harayamajrlab.bsky.social @logan-tenney.bsky.socialbiorxiv.org 53912
Reposted by Alex SolivanJamie Cate @jhdcate.bsky.social · 27/04/2026The best thing since *before* sliced bread... VIPRs. www.biorxiv.org/content/10.6... www.biorxiv.org/content/10.6...biorxiv.org 14319
Reposted by Alex SolivanSorek Lab @soreklab.bsky.social · 23/04/2026We found that TIR domains in animal immune proteins, including the human TLR4, are enzymes that cleave NAD+ to produce the signaling molecule cADPR Read our new preprint by talented Bohdana Hurieva: “Conserved catalytic activity of immune TIR domains in animals” www.biorxiv.org/content/10.6...biorxiv.org 29349
Reposted by Alex SolivanDavid Bikard @dbikard.bsky.social · 17/04/2026Very proud of this work and all the efforts from my team and collaborators on this! You can now use DGRs for in vivo targeted hypermutagenesis in E. coli. We also included some early proof of concept in Yeast thanks to @seth-shipman.bsky.social ! 08236
Reposted by Alex SolivanAlex Gao @algao.bsky.social · 16/04/2026Excited to share our new findings in @science.org on how the DRT3 bacterial defense system uses a reverse transcriptase that builds DNA repeats without a nucleic acid template. Microbes never cease to amaze! www.science.org/doi/10.1126/...science.orgScience | AAAS 412460
Reposted by Alex SolivanTung Le @tunglejic.bsky.social · 16/04/2026Finally published. Many thanks to a wonderful collaborative team and scientific platforms!!! And thanks to editors and reviewers for enthusiasm and a great review. www.nature.com/articles/s41...nature.comA bacterial CARD–NLR-like immune system controls the release of gene transfer agents - Nature MicrobiologyAn immunity-like system functions as a lysis control hub to promote gene transfer agent particle release from host bacterial cells, suggesting that bacterial immune systems may be co-opted to promote ... 48837
Reposted by Alex SolivanRaphael Laurenceau @raphael-microb.bsky.social · 16/04/2026🔈Paper out! We turned the most fascinating phage host-switch mechanism, diversity-generating retroelements, into a programmable mutagenesis tool, DGRec. You can perform targeted hypermutation of any 50-200bp sequence directly in vivo in E. coli www.nature.com/articles/s41...nature.comDiversity-generating retroelements for programmable targeted hypermutagenesis - Nature BiotechnologyDiversity-generating retroelements are engineered for directed evolution in E.coli. 59843
Alex Solivan @alexsolivan.bsky.social · 13/04/2026I feel like this paper just changed my brain chemistry. Absolute game changer and I can’t wait to see what comes next! 010
Reposted by Alex Solivansergiocatz1.bsky.social @sergiocatz1.bsky.social · 06/04/2026We are delighted that our article "Munc13-4–STX7 inhibitors impair endosomal TLR activation and systemic inflammation" is now published online in Nature Chemical Biology. Please see our discovery of ENDOtollins here: rdcu.be/fbU78rdcu.beMunc13-4–STX7 inhibitors impair endosomal TLR activation and systemic inflammationNature Chemical Biology - Endosomal Toll-like receptors (TLRs) are central to the innate immune response but their overactivation can cause systemic inflammation and disease. Now, new small... 061
Reposted by Alex SolivanWaggoner Lab @labwaggoner.bsky.social · 06/04/2026Munc13-4–STX7 inhibitors impair endosomal TLR activation and systemic inflammation @natchembio.nature.com www.nature.com/articles/s41... @scripps.edu 031
Reposted by Alex SolivanNature @nature.com · 02/04/2026Bacteria have been fighting off viruses using a huge arsenal of molecular weaponry that scientists did not know about — until now. Researchers have identified proteins that could lead to virus-fighting drugs and technologies. go.nature.com/4dqQnXIgo.nature.com‘Treasure trove’ of antiviral proteins could inspire powerful molecular toolsTwo research teams mined genomic data from bacteria to create databases containing thousands of antiviral defence proteins that could inspire powerful biotechnologies. 110040
Reposted by Alex SolivanPeter DeWeirdt @pdeweirdt.bsky.social · 02/04/2026Excited to see our work out in Science today! Using machine learning to identify prokaryotic immune systems www.science.org/doi/10.1126/...science.orgDefensePredictor: A machine learning model to discover prokaryotic immune systemsAntiphage defense systems protect bacteria from viral infection and have inspired important biotechnologies such as CRISPR-Cas9 while also revealing the evolutionary roots of eukaryotic innate immunit... 59337
Reposted by Alex SolivanCell - a Cell Press journal @cp-cell.bsky.social · 31/03/2026Now online! Arbitrium phages can manipulate each other’s lysis/lysogeny decisionsdlvr.itArbitrium phages can manipulate each other’s lysis/lysogeny decisionsArbitrium phages belonging to different species and genera can influence each other’s infection dynamics by secreting chemically similar, non-cognate signal peptides. These findings indicate that arbitrium-based communication is not as specific as previously thought. 062
Reposted by Alex SolivanPaul Carini @uncultured.carinilab.com · 17/03/2026And if you have not been accepted, understand that this is a VERY weird time for grad admissions. Lack of acceptance may not be due to YOU, but due to uncontrollable factors at the university. Keep trying in the future. 14023
Reposted by Alex SolivanSam Hobbs @hobbslabutah.bsky.social · 06/03/2026CBASS is a cyclic nucleotide-based antiviral system in bacteria that is related to cGAS-STING signaling in animals. One of the big questions is how CBASS is activated during phage infection? We made some progress on this during my final year in the Kranzusch lab. www.biorxiv.org/content/10.6...biorxiv.org 35027
Reposted by Alex SolivanBejaLabTechnion @bejalab.bsky.social · 04/03/2026A jumbo cyanophage encodes the most complete ribosomal protein set in the known virosphere www.biorxiv.org/content/10.1... 13317
Reposted by Alex SolivanSternberg Lab @sternberglab.bsky.social · 04/03/2026Out now! In collaboration with Leifu Chang, we uncover the molecular and structural underpinnings of CRISPR-Cas12f-like RNA-guided transcription systems! Links to the published articles: tinyurl.com/55kpavet tinyurl.com/sk6djwx3 Previous thread for the preprint: bsky.app/profile/did:... 07027
Reposted by Alex SolivanRyan Flynn @raflynn5.bsky.social · 28/01/2026Science update from my postdoc Peiyuan Chai - his work “glycoRNA complexed with heparan sulfate regulates VEGF-A signaling” is now published @nature.com uncovering a new layer or glycoRNA-regulation of growth factor mediated control physiological processes rdcu.be/e1bBX 67928
Reposted by Alex SolivanCarolyn Bertozzi @carolynbertozzi.bskyverified.social · 28/01/2026New #glycotime discovery from @raflynn5.bsky.social’s lab @bostonchildrens.bsky.social @harvard.edu, cell surface glycoRNA-RBP complexes organized by heparan sulfate PG nanoclusters that modulate VEGF signaling www.nature.com/articles/s41...nature.comGlycoRNA complexed with heparan sulfate regulates VEGF-A signalling - NatureHeparan sulfate proteoglycans facilitate the assembly of clusters of glycoRNAs and cell surface RNA-binding proteins, which negatively modulate VEGF-A signalling and angiogenesis. 03512
Reposted by Alex SolivanStanna Dorn, PhD @stanna-dorn.bsky.social · 10/01/2026Dreams really do come true 🎊 I'm extremely excited to be joining the University of Vermont this fall as a Tenure-track Assistant Professor in Chemistry! 48104428
Reposted by Alex SolivanC&EN (Chemical & Engineering News) @cenmag.bsky.social · 26/11/2025A research team has found multiple lineages of archaea that have fully repurposed the TAG stop codon to encode the noncanonical amino acid pyrrolysine. cen.acs.org/biological-c... #chemsky 🧪cen.acs.orgThese archaea built a distinct genetic code to put pyrrolysine in proteinsThat feat has synthetic biologists excited 0144
Reposted by Alex SolivanJim Van Deventer @vandeventerjim.bsky.social · 20/11/2025Today, I'm grateful that Alanna Schepartz is visiting Tufts. Alanna's leadership of @cgemcci.bsky.social has led to impressive advances in genetic code expansion, including recently published work pushing encoding beyond alpha-amino acids. #ChemSky #ChemChat www.nature.com/articles/s41...nature.comSite-selective protein editing by backbone extension acyl rearrangements - Nature Chemical BiologyA post-translational backbone extension acyl rearrangement (BEAR) reaction has now been developed that converts a ribosomal protein product into a new product containing a β-peptide, γ-peptide or δ-pe... 074
Reposted by Alex SolivanKranzusch Lab @kranzuschlab.bsky.social · 25/09/2025You’ve heard of ubiquitination, meet deazaguanylation: Doug Wassarman in our lab discovered phage defense pathways have co-opted Q nucleobase biosynthetic enzymes to catalyze a new form of protein conjugation chemistry @science.org www.science.org/doi/10.1126/... 28938
Reposted by Alex SolivanMartin Stoermer @martinstoermer.bsky.social · 20/08/2025Well it’s chemistry of course. The reason why organic chemists historically make p-tosylates rather than the simpler benzenesulfonates is that p-tosyl chloride is a cheap byproduct from saccharin synthesis. The ortho isomer is used for saccharin. #chemsky 🧪 3364
Reposted by Alex SolivanKai Johnsson @kjohnsson.bsky.social · 03/07/2025Finally out in Nature Chem Bio: SNAP-tag2 for faster and brighter protein labeling www.nature.com/articles/s41... Thank you Steffi and Veselin.nature.comSNAP-tag2 for faster and brighter protein labeling - Nature Chemical BiologySNAP-tag is a widespread tool for labeling protein for bioimaging. Now, Kühn et al. report SNAP-tag2 with increased labeling kinetics and brightness, which translates into a better performance in live... 217275
Reposted by Alex SolivanDong Group at UChicago @gbdlab.bsky.social · 12/06/2025How do you turn a carbonyl into sulfur? In this work, Zining from our lab developed a carbonyl-to-sulfur swap enabled by a rationally designed N′-alkyl-hydrazonamide (NAHA) reagent that promotes double C-C bond activation. www.science.org/doi/10.1126/... 03012
Reposted by Alex SolivanScott Bagley @bagphos.bsky.social · 29/05/2025Seems a good time to post the “Top types of med chem papers” #ChemSky 2273
Alex Solivan @alexsolivan.bsky.social · 28/05/2025Never am I more convinced that I angered an eldritch god in a past life than when I’m trying to pipette a sample in dmso-d6 into a 3mm NMR tube #chemsky 292
Reposted by Alex SolivanMike Feigin 🥯 @mikefeigin.bsky.social · 14/05/2025I was having a hard time describing how a plate of cultured cells didn’t look healthy to a new undergrad in the lab. He looked at them and said, “oh yeah, the vibes are off.” Thank god for Gen Z. 811611
Reposted by Alex SolivanChandrima Majumdar @c-majumdar.bsky.social · 09/05/2025Check out our latest preprint describing two structures of ribosomes complexed with the two enantiomers of a β2-hydroxy acid. Our structures show that despite stereochemical differences, both are ultimately well positioned for bond formation within the ribosome! chemrxiv.org/engage/chemr...chemrxiv.orgEscherichia coli ribosomes support translation of (R) and (S) β2-hydroxyacids in vitro: a structural and biochemical studyThe ribosomal incorporation of backbone-modified amino acid analogs into peptides and proteins enables the programmed synthesis of sequence-defined biopolymers with tunable properties. However, the su... 064
Alex Solivan @alexsolivan.bsky.social · 07/05/2025Ah we love a classic case of “is this unstable, toxic, and generally annoying reagent *actually* necessary to get this rxn to work or is it just how the first guy did it and no one bothered to change it in the last 30 years??” :))) #chemsky 3494
Reposted by Alex SolivanMark Levin @levinchem.bsky.social · 03/04/2025If you're interested in a break from the doom-and-gloom, may I recommend our article, online today @nature.com A solution to the pyrazole alkylation problem, leveraging S-to-NR atom replacement. Skeletal editing has strategic value, outside of late-stage! www.nature.com/articles/s41... 713626