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Alex Solivan

@alexsolivan.bsky.social
199 followers 185 following 47 posts

UC Berkeley ChemBio PhD candidate in Schepartz Lab | Northwestern Alum | chemically inclined, biologically aligned (and growing to be microbio-y-curious…) | 🇵🇷🇭🇰

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Reposted by Alex Solivan
Kranzusch Lab @kranzuschlab.bsky.social · 17/09/2026
New enzymes that create natural phosphorothioate modifications in RNA share homology with proteins in bacterial DndABCDE anti-phage defense! www.cell.com/cell/abstrac...
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Reposted by Alex Solivan
Jeremy Baskin @jeremybaskin.bsky.social · 06/08/2026
Thrilled to share our new work, co-developed w/Adrian Salic's lab: bioorthogonal probes for labeling PE, a multifunctional membrane lipid and source of important protein modifications. Congrats to Yuan-Ting Cho, Brittany White-Mathieu, Jade Xia, & Cindy Jao! onlinelibrary.wiley.com/doi/10.1002/...
onlinelibrary.wiley.com
Bioorthogonal Tools for Ethanolamine Lipids and Protein Conjugates
An alkyne-tagged ethanolamine analog (AlkEA) enables bioorthogonal, metabolic labeling of endogenous phosphatidylethanolamine (PE) and its protein modifications. AlkEA is incorporated into PE via the...
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Reposted by Alex Solivan
Landon Getz @landongetz.bsky.social · 06/08/2026
DNA glycosylases are repair enzymes, essential to all cellular life. They find chemically damaged bases and remove them so DNA can be repaired. Today in Nature Microbiology, we show bacteria have repeatedly repurposed them into antiviral immune systems 🧵 www.nature.com/articles/s41...
nature.com
Antiviral defence is a conserved function of diverse bacterial DNA glycosylases - Nature Microbiology
DNA glycosylases, typically used for DNA repair, can also protect bacteria against phages that would otherwise evade host immunity by incorporating modified bases into their genomes.
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Alex Solivan @alexsolivan.bsky.social · 04/08/2026
As someone’s whose chemistry is almost always colorless or an ugly yellow, I was not prepared for the sheer dread one could feel when a nice colorful reaction suddenly turns the *wrong* color before your very eyes… #chemsky
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 29/07/2026
Cool method for nano pore based peptide sequencing, nice use of copper-free click chemistry as well! www.nature.com/articles/s41...
nature.com
Sequential reading of a stepwise-shortened peptide immobilized on nanopore - Nature
A nanopore-based ‘chop and measure’ method sequences peptides at single-amino-acid resolution by using enzymatic digestion to progressively shorten the N terminus one residue at a time,...
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Alex Solivan @alexsolivan.bsky.social · 28/07/2026
Random professional development question for the community but at what stage do people stop asking their undergrad PI for LORs? Like as a rising 4th year looking at F-series NIH grants, would it be odd if one of my letters came from my undergrad PI or am I overthinking this…?
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Reposted by Alex Solivan
Green Lab JHMI @greenlab.bsky.social · 24/07/2026
Wait, what?! This isn’t about ribosomes? Check out our new work where we find that a #Legionella effector thought to target host translation instead targets metabolism by modifying a host glycolytic metabolite. Led by @drjoshblack.bsky.social www.cell.com/molecular-ce...
cell.com
The Legionella pneumophila effector SidL is an adenylyltransferase that modifies the glycolytic intermediate 3-phosphoglycerate
Black et al. identify the L. pneumophila effector SidL as an adenylyltransferase that targets host glycolysis. SidL covalently modifies the glycolytic intermediate 3-phosphoglycerate (3PG) with AMP, g...
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Alex Solivan @alexsolivan.bsky.social · 26/06/2026
Strong candidate for paper of the year in my opinion 👀
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Reposted by Alex Solivan
Jeff Martell @jeffmartell.bsky.social · 17/06/2026
Check out this awesome paper from @neugmonicaelena.bsky.social on a new family of nickel pincer enzymes! www.nature.com/articles/s41...
nature.com
Discovery and characterization of a nickel enzyme family that catalyses intermolecular hydride shuttling - Nature Chemistry
There is limited understanding of nickel-catalysed chemistry in nature. Now a bioinformatic pipeline reveals a structurally distinct family of nickel pincer nucleotide-dependent enzymes. Nickel pincer...
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Reposted by Alex Solivan
NSF C-GEM @cgemcci.bsky.social · 11/06/2026
✨ New preprint from C-GEM: Altering the ribosome exit tunnel to improve consecutive incorporation of challenging monomers Link: www.biorxiv.org/content/10.6... This paper is a fantastic collaboration between the Cate and Schepartz labs catalyzed by C-GEM. #NSFfunded
biorxiv.org
Altering the ribosome exit tunnel to improve consecutive incorporation of challenging monomers
Ribosomes are capable of incorporating a wide array of natural and unnatural monomers into growing polymer chains, but can be stalled by monomers with constrained or non-natural backbones. Here we eva...
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Reposted by Alex Solivan
Tobias Warnecke @tobiaswarnecke.bsky.social · 11/06/2026
Archaea are the hornets of the microbial world. Discuss. www.biorxiv.org/content/10.6... TLDR: Archaeon kills bacterium with secreted phospholipase. Pretty nifty way to kill bacteria for a microbe with a very different lipid make-up, I reckon. No need to worry about accidentally killing yourself.
biorxiv.org
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Ryan Flynn @raflynn5.bsky.social · 28/05/2026
Happy to share a new review: Functional Inclusion of RNA Biology in the Tethered Extracellular Matrix We discuss the emerging interface of RNA biology and the ECM. The way biology solved protein-HS interactions is very similar to RNA-protein! wires.onlinelibrary.wiley.com/doi/10.1002/...
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Jackson Cahn @jkbcahn.bsky.social · 07/05/2026
This is the big one! So proud to have played a part on this team. www.science.org/doi/10.1126/... Enlicitide is an exciting potential molecule for cardiovascular disease, but if we were going to make it on a commercial scale, existing chemical techniques just weren't going to cut it.
science.org
Biocatalytic cascades enable manufacture of the macrocyclic peptide enlicitide
Historically, many compelling therapeutic targets have been accessible only by injectable biologic drugs. Macrocyclic peptides, such as the proprotein convertase subtilisin/kexin type 9 inhibitor enli...
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Reposted by Alex Solivan
laurelrobbins.bsky.social @laurelrobbins.bsky.social · 05/05/2026
I’m thrilled to share an update to our work on bacterial NACHT domain containing proteins! In our last preprint, we reported that bNACHT11 is activated by multiple phage proteins. We’ve now expanded this work with structural insight and investigation of programmed cell death following activation.
biorxiv.org
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Harris Wang @harriswang.bsky.social · 01/05/2026
1/ Excited to share our new paper in Science @science.org: “Toward life with a 19-amino acid alphabet through generative artificial intelligence design.” A great collab w/ Sergey's group @sokrypton.org at MIT @columbiasysbio.bsky.social science.org/doi/10.1126/... 🦠🧬🛠️🖥️💥
science.org
Toward life with a 19–amino acid alphabet through generative artificial intelligence design
Because all known living organisms are made from at least 20 canonical amino acids, the feasibility of life using a more simplified alphabet remains unclear. In this work, we leveraged computational d...
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Cress Lab @cresslab.bsky.social · 30/04/2026
Our lab is proud to present our latest work harnessing Bridge Recombinase for genome-scale editing in diverse bacteria, microbiome editing, and programmable horizontal gene transfer.
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Kenneth Loi @kenjmloi.bsky.social · 27/04/2026
Excited to share our discovery of a new programmable RNA-guided DNA-targeting system hiding inside bacteriophages that predates CRISPR. We call it VIPR (Viral Interference Programmable Repeat), and it uses an entirely new logic to find its targets. Thread + link below.
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Johannes Morstein @morstein.bsky.social · 27/04/2026
Excited to share the first study from the Morstein Lab on a new approach that enables selective editing, tagging, and visualization of mammalian lipids www.biorxiv.org/cgi/content/... #chembio #lipidtime @caltech.edu @caltechcce.bsky.social @harayamajrlab.bsky.social @logan-tenney.bsky.social
biorxiv.org
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Jamie Cate @jhdcate.bsky.social · 27/04/2026
The best thing since *before* sliced bread... VIPRs. www.biorxiv.org/content/10.6... www.biorxiv.org/content/10.6...
biorxiv.org
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Sorek Lab @soreklab.bsky.social · 23/04/2026
We found that TIR domains in animal immune proteins, including the human TLR4, are enzymes that cleave NAD+ to produce the signaling molecule cADPR Read our new preprint by talented Bohdana Hurieva: “Conserved catalytic activity of immune TIR domains in animals” www.biorxiv.org/content/10.6...
biorxiv.org
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David Bikard @dbikard.bsky.social · 17/04/2026
Very proud of this work and all the efforts from my team and collaborators on this! You can now use DGRs for in vivo targeted hypermutagenesis in E. coli. We also included some early proof of concept in Yeast thanks to @seth-shipman.bsky.social !
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Alex Gao @algao.bsky.social · 16/04/2026
Excited to share our new findings in @science.org on how the DRT3 bacterial defense system uses a reverse transcriptase that builds DNA repeats without a nucleic acid template. Microbes never cease to amaze! www.science.org/doi/10.1126/...
science.org
Science | AAAS
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Tung Le @tunglejic.bsky.social · 16/04/2026
Finally published. Many thanks to a wonderful collaborative team and scientific platforms!!! And thanks to editors and reviewers for enthusiasm and a great review. www.nature.com/articles/s41...
nature.com
A bacterial CARD–NLR-like immune system controls the release of gene transfer agents - Nature Microbiology
An immunity-like system functions as a lysis control hub to promote gene transfer agent particle release from host bacterial cells, suggesting that bacterial immune systems may be co-opted to promote ...
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Reposted by Alex Solivan
Raphael Laurenceau @raphael-microb.bsky.social · 16/04/2026
🔈Paper out! We turned the most fascinating phage host-switch mechanism, diversity-generating retroelements, into a programmable mutagenesis tool, DGRec. You can perform targeted hypermutation of any 50-200bp sequence directly in vivo in E. coli www.nature.com/articles/s41...
nature.com
Diversity-generating retroelements for programmable targeted hypermutagenesis - Nature Biotechnology
Diversity-generating retroelements are engineered for directed evolution in E.coli.
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Alex Solivan @alexsolivan.bsky.social · 13/04/2026
I feel like this paper just changed my brain chemistry. Absolute game changer and I can’t wait to see what comes next!
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Reposted by Alex Solivan
sergiocatz1.bsky.social @sergiocatz1.bsky.social · 06/04/2026
We are delighted that our article "Munc13-4–STX7 inhibitors impair endosomal TLR activation and systemic inflammation" is now published online in Nature Chemical Biology. Please see our discovery of ENDOtollins here: rdcu.be/fbU78
rdcu.be
Munc13-4–STX7 inhibitors impair endosomal TLR activation and systemic inflammation
Nature Chemical Biology - Endosomal Toll-like receptors (TLRs) are central to the innate immune response but their overactivation can cause systemic inflammation and disease. Now, new small...
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Reposted by Alex Solivan
Waggoner Lab @labwaggoner.bsky.social · 06/04/2026
Munc13-4–STX7 inhibitors impair endosomal TLR activation and systemic inflammation @natchembio.nature.com www.nature.com/articles/s41... @scripps.edu
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Nature @nature.com · 02/04/2026
Bacteria have been fighting off viruses using a huge arsenal of molecular weaponry that scientists did not know about — until now. Researchers have identified proteins that could lead to virus-fighting drugs and technologies. go.nature.com/4dqQnXI
go.nature.com
‘Treasure trove’ of antiviral proteins could inspire powerful molecular tools
Two research teams mined genomic data from bacteria to create databases containing thousands of antiviral defence proteins that could inspire powerful biotechnologies.
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Reposted by Alex Solivan
Peter DeWeirdt @pdeweirdt.bsky.social · 02/04/2026
Excited to see our work out in Science today! Using machine learning to identify prokaryotic immune systems www.science.org/doi/10.1126/...
science.org
DefensePredictor: A machine learning model to discover prokaryotic immune systems
Antiphage defense systems protect bacteria from viral infection and have inspired important biotechnologies such as CRISPR-Cas9 while also revealing the evolutionary roots of eukaryotic innate immunit...
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Reposted by Alex Solivan
Cell - a Cell Press journal @cp-cell.bsky.social · 31/03/2026
Now online! Arbitrium phages can manipulate each other’s lysis/lysogeny decisions
dlvr.it
Arbitrium phages can manipulate each other’s lysis/lysogeny decisions
Arbitrium phages belonging to different species and genera can influence each other’s infection dynamics by secreting chemically similar, non-cognate signal peptides. These findings indicate that arbitrium-based communication is not as specific as previously thought.
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Paul Carini @uncultured.carinilab.com · 17/03/2026
And if you have not been accepted, understand that this is a VERY weird time for grad admissions. Lack of acceptance may not be due to YOU, but due to uncontrollable factors at the university. Keep trying in the future.
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Sam Hobbs @hobbslabutah.bsky.social · 06/03/2026
CBASS is a cyclic nucleotide-based antiviral system in bacteria that is related to cGAS-STING signaling in animals. One of the big questions is how CBASS is activated during phage infection? We made some progress on this during my final year in the Kranzusch lab. www.biorxiv.org/content/10.6...
biorxiv.org
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BejaLabTechnion @bejalab.bsky.social · 04/03/2026
A jumbo cyanophage encodes the most complete ribosomal protein set in the known virosphere www.biorxiv.org/content/10.1...
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Sternberg Lab @sternberglab.bsky.social · 04/03/2026
Out now! In collaboration with Leifu Chang, we uncover the molecular and structural underpinnings of CRISPR-Cas12f-like RNA-guided transcription systems! Links to the published articles: tinyurl.com/55kpavet tinyurl.com/sk6djwx3 Previous thread for the preprint: bsky.app/profile/did:...
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Ryan Flynn @raflynn5.bsky.social · 28/01/2026
Science update from my postdoc Peiyuan Chai - his work “glycoRNA complexed with heparan sulfate regulates VEGF-A signaling” is now published @nature.com uncovering a new layer or glycoRNA-regulation of growth factor mediated control physiological processes rdcu.be/e1bBX
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 28/01/2026
New #glycotime discovery from @raflynn5.bsky.social’s lab @bostonchildrens.bsky.social @harvard.edu, cell surface glycoRNA-RBP complexes organized by heparan sulfate PG nanoclusters that modulate VEGF signaling www.nature.com/articles/s41...
nature.com
GlycoRNA complexed with heparan sulfate regulates VEGF-A signalling - Nature
Heparan sulfate proteoglycans facilitate the assembly of clusters of glycoRNAs and cell surface RNA-binding proteins, which negatively modulate VEGF-A signalling and angiogenesis.
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Stanna Dorn, PhD @stanna-dorn.bsky.social · 10/01/2026
Dreams really do come true 🎊 I'm extremely excited to be joining the University of Vermont this fall as a Tenure-track Assistant Professor in Chemistry!
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C&EN (Chemical & Engineering News) @cenmag.bsky.social · 26/11/2025
A research team has found multiple lineages of archaea that have fully repurposed the TAG stop codon to encode the noncanonical amino acid pyrrolysine. cen.acs.org/biological-c... #chemsky 🧪
cen.acs.org
These archaea built a distinct genetic code to put pyrrolysine in proteins
That feat has synthetic biologists excited
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Jim Van Deventer @vandeventerjim.bsky.social · 20/11/2025
Today, I'm grateful that Alanna Schepartz is visiting Tufts. Alanna's leadership of @cgemcci.bsky.social has led to impressive advances in genetic code expansion, including recently published work pushing encoding beyond alpha-amino acids. #ChemSky #ChemChat www.nature.com/articles/s41...
nature.com
Site-selective protein editing by backbone extension acyl rearrangements - Nature Chemical Biology
A post-translational backbone extension acyl rearrangement (BEAR) reaction has now been developed that converts a ribosomal protein product into a new product containing a β-peptide, γ-peptide or δ-pe...
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Kranzusch Lab @kranzuschlab.bsky.social · 25/09/2025
You’ve heard of ubiquitination, meet deazaguanylation: Doug Wassarman in our lab discovered phage defense pathways have co-opted Q nucleobase biosynthetic enzymes to catalyze a new form of protein conjugation chemistry @science.org www.science.org/doi/10.1126/...
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Martin Stoermer @martinstoermer.bsky.social · 20/08/2025
Well it’s chemistry of course. The reason why organic chemists historically make p-tosylates rather than the simpler benzenesulfonates is that p-tosyl chloride is a cheap byproduct from saccharin synthesis. The ortho isomer is used for saccharin. #chemsky 🧪
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Alex Solivan @alexsolivan.bsky.social · 10/07/2025
>1700 examples???
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Kai Johnsson @kjohnsson.bsky.social · 03/07/2025
Finally out in Nature Chem Bio: SNAP-tag2 for faster and brighter protein labeling www.nature.com/articles/s41... Thank you Steffi and Veselin.
nature.com
SNAP-tag2 for faster and brighter protein labeling - Nature Chemical Biology
SNAP-tag is a widespread tool for labeling protein for bioimaging. Now, Kühn et al. report SNAP-tag2 with increased labeling kinetics and brightness, which translates into a better performance in live...
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Dong Group at UChicago @gbdlab.bsky.social · 12/06/2025
How do you turn a carbonyl into sulfur? In this work, Zining from our lab developed a carbonyl-to-sulfur swap enabled by a rationally designed N′-alkyl-hydrazonamide (NAHA) reagent that promotes double C-C bond activation. www.science.org/doi/10.1126/...
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Scott Bagley @bagphos.bsky.social · 29/05/2025
Seems a good time to post the “Top types of med chem papers” #ChemSky
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Alex Solivan @alexsolivan.bsky.social · 28/05/2025
Never am I more convinced that I angered an eldritch god in a past life than when I’m trying to pipette a sample in dmso-d6 into a 3mm NMR tube #chemsky
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Mike Feigin 🥯 @mikefeigin.bsky.social · 14/05/2025
I was having a hard time describing how a plate of cultured cells didn’t look healthy to a new undergrad in the lab. He looked at them and said, “oh yeah, the vibes are off.” Thank god for Gen Z.
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Chandrima Majumdar @c-majumdar.bsky.social · 09/05/2025
Check out our latest preprint describing two structures of ribosomes complexed with the two enantiomers of a β2-hydroxy acid. Our structures show that despite stereochemical differences, both are ultimately well positioned for bond formation within the ribosome! chemrxiv.org/engage/chemr...
chemrxiv.org
Escherichia coli ribosomes support translation of (R) and (S) β2-hydroxyacids in vitro: a structural and biochemical study
The ribosomal incorporation of backbone-modified amino acid analogs into peptides and proteins enables the programmed synthesis of sequence-defined biopolymers with tunable properties. However, the su...
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Alex Solivan @alexsolivan.bsky.social · 07/05/2025
Ah we love a classic case of “is this unstable, toxic, and generally annoying reagent *actually* necessary to get this rxn to work or is it just how the first guy did it and no one bothered to change it in the last 30 years??” :))) #chemsky
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Mark Levin @levinchem.bsky.social · 03/04/2025
If you're interested in a break from the doom-and-gloom, may I recommend our article, online today @nature.com A solution to the pyrazole alkylation problem, leveraging S-to-NR atom replacement. Skeletal editing has strategic value, outside of late-stage! www.nature.com/articles/s41...
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