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Taras Pogorelov

@taraspogorelov.bsky.social
917 followers 1.4K following 41 posts

Theoretical & computational biophysics. Molecular information transfer in the cell. In-cell signaling, protein, membrane & lipid dynamics. Complex environments. Lab @UIUC: pogorelov.mcb.illinois.edu

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Reposted by Taras Pogorelov
European Research Council (ERC) @erc.europa.eu · 29/09/2026
The ERC will introduce a new evaluation panel dedicated to the fundamentals of #AI. Starting with the 2028 calls, the new panel will cover fundamental research in machine learning, reasoning, computer vision, natural language processing & generative AI. #AIResearch #grant 🧪 link.europa.eu/jYcNjy
erc.europa.eu
ERC to introduce evaluation panel on the fundamentals of AI
Artificial intelligence (AI) has developed into a major and rapidly expanding area of computer science, with AI-related ERC project proposals representing a significant share of submissions to the cur...
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Reposted by Taras Pogorelov
Martin Pacesa @martinpacesa.bsky.social · 21/09/2026
ʙɪɴᴅᴄʀᴀꜰᴛ2 is out, and we're not waiting for the paper. The full code drops today, free for academic and industry use. We're releasing it early so you can start designing right now, and bring its full power to the current Adaptyv competition. github.com/PacesaLab/Bi...
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Elisa Fadda @elisafadda.bsky.social · 14/09/2026
🚨 Want to be part of top #glycotime on the seaside in the California sunshine? Register to the 2027 GRC Glycobiology ⬇️ Stacy and Lance put togteher up one of the most exciting programmes I have ever seen with phenomenal keynotes! We have 32 abstracts to select, so the next speaker could be YOU! 😎
Announcement of the GRC Glycobiology 2027 to be held in Ventura CA on March 14 to 19, 2027. Blue background with an photo of Ventura from the visitventuraca.com
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Pablo Navarro @pablonavarrolab.bsky.social · 03/06/2026
The list of speakers is very nice, mixing the two fields in synergy. Many abstracts will be selected for oral presentation.
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Reposted by Taras Pogorelov
Biophysical Journal @biophysj.bsky.social · 09/09/2026
Special issue call for papers: Fifty Years of Protein Dynamics: Celebrating Andy McCammon and the Evolution of Computational Biophysics. buff.ly/JcBPrrO
biophysics.org
https://www.biophysics.org/Portals/0/BPSAssets/Publications/Documents/BJ_CallForPapers_ProteinDynamics.pdf#Page=1
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Irina Bezsonova @irinabezsonova.bsky.social · 06/09/2026
A fantastic place to work with strong scientific community, core facilities and infrastructure including biomolecular NMR. Apply! urldefense.com/v3/__https:/...
urldefense.com
Assistant Professor – Biological Chemistry - Amherst, Massachusetts, United States
Title: Assistant Professor – Biological Chemistry Executive Area: Academic Affairs College/School/MBU: College of Natural Sciences Department: Chemistry Work Location: Amherst Schedule: Full Time Work...
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Reposted by Taras Pogorelov
John C. Baez @johncarlosbaez.bsky.social · 06/09/2026
Joan Birman is amazing! www.nytimes.com/2026/09/06/s...
nytimes.com
The 92-Year-Old Mathematician and the Teenage Apprentice (Gift Article)
Joan Birman thought her major discoveries were behind her. Then came an email from a young neighbor — a girl who knew little but wanted to learn.
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Magnetic Resonance News @nmr900.bsky.social · 01/09/2026
Angela M. Gronenborn (University of Pittsburgh) to receive the 2027 Nakanishi Prize @acs.org to recognize her significant work that extends chemical and spectroscopic methods to the study of important biological phenomena cen.acs.org/acs-news/acs... #NMRchat 🧲
cen.acs.org
ACS names 2027 National Award winners
The winners are being acknowledged for their outstanding achievements in chemistry across various fields in the discipline
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Reposted by Taras Pogorelov
Brian J. Enquist @bjenquist.bsky.social · 31/08/2026
Thrilled to announce that my department - Ecology and Evolutionary Biology - at the U of Arizona will likely be hiring for a tenure-track position in "Population and Community Ecology" this fall. Watch this space for more details and official announcements coming soon ... #Ecology #EcologyJobs 🌐🌾🧪
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Reposted by Taras Pogorelov
Kresten Lindorff-Larsen @lindorfflarsen.bsky.social · 30/08/2026
Preprint with work led by Fran Toplek in Tatiana Morozova's recently established lab in Lyon on refining and testing the Martini models ability to capture properties of IDR condensates including structural and dynamical properties, and ion partitioning. doi.org/10.64898/202...
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Dimova Lab @dimovalab.bsky.social · 30/08/2026
🔬 PhD position: use patterned light to locally trigger division & endocytosis in synthetic cells (#GUVs)! Join Dimova & Santer labs via IMPRS-FMD @mpici.bsky.social & @unipotsdam.bsky.social MSc in (bio)physics/chemistry/soft matter needed Apply by Sep 15: imprs.mpikg.mpg.de/project-2603/
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Institute of Science and Technology Austria (ISTA) @istaresearch.bsky.social · 29/06/2026
First author, ISTA PhD student Advaith Maddipatla. Co-leading authors: @alex-bronstein.bsky.social, Ailie Marx, @paulschanda.bsky.social, and @sankethvedula.bsky.social.
ISTA researchers guide AlphaFold with experimental data, paving the way for improved future predictive models. Left to right: Advaith Maddipatla, Meital Bojan, Alex Bronstein, Nadav Sellam Bojan, and Paul Schanda. © ISTA
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Chemjobber @chemjobber.bsky.social · 18/08/2026
The 2027 Chemistry Faculty Jobs List has 72 tenure-track positions and 3 teaching-only positions: docs.google.com/spreadsheets... #facultychemjobs #chemsky #chemchat ⚗️🧪
docs.google.com
The 2027 Chemistry Faculty Jobs List
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Reposted by Taras Pogorelov
Kaçar Lab at UW-Madison @kacarlab.bsky.social · 06/08/2026
🚨 Job alert! 🚨 Join the faculty at UW–Madison Bacteriology! We have two faculty searches: • Asst Prof (Microbial Communities & Bioeconomy) • Asst / Assoc / Full Prof (Systems & Synthetic Biology) Check out the open positions and apply👇 #FacultyJobs #SynBio #Microbiology #Astrobiology #Evolution
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Biophysical Society @biophysicalsoc.bsky.social · 17/08/2026
Students! Did you know there are poster competitions for you at the BPS Annual Meeting? Learn more and apply buff.ly/rnXbm1C
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Reposted by Taras Pogorelov
Marianne Alleyne @cotesia.bsky.social · 15/08/2026
My Department at the University of Illinois at Urbana-Champaign invites applications from entomologists with research portfolios in which INSECT BIODIVERSITY LOSS is a key element (at the assistant professor level). illinois.csod.com/ux/ats/caree...
Picture of a green tree-lined quad at the University of Illinois Urbana Champaign, with Foellinger Hall in the background. Skies are often this blue.
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Reposted by Taras Pogorelov
Alex Guseman @alexguseman.bsky.social · 11/08/2026
Im looking for a postdoc to help with protein engineering efforts. If you know who could be a good fit send them my way! see details below:
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Reposted by Taras Pogorelov
Nature @nature.com · 31/07/2026
Nature research paper: Enzymatic glycosylation and amidation reshapes polyene bioactivity go.nature.com/4blUjXP
go.nature.com
Enzymatic glycosylation and amidation reshapes polyene bioactivity - Nature
Pathways to previously undescribed polyenes, including unusual enzymes that introduce more sugars onto polyene scaffolds, are discovered, and their accessibility through clean and efficient fermentation and potential for safe use as antifungal treatments is described.
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Reposted by Taras Pogorelov
André Nadler @nadlerlab.bsky.social · 29/07/2026
Lipids build the membranes of all cells, but identifying their precise functions is extremely challenging. Here’s our attempt to change that: How to find and understand lipid-protein interactions, by Katelyn Cook & company. www.biorxiv.org/content/10.6...
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Protein Society @proteinsociety.bsky.social · 14/07/2026
🏆 Meet the 2026 Award Winners who will be recognized at #TPS40! From pioneering discoveries to lasting contributions in protein science, these outstanding scientists will also deliver award lectures during the symposium. Join us in congratulating this year's recipients!
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Reposted by Taras Pogorelov
Sorek Lab @soreklab.bsky.social · 13/07/2026
Ilya Osterman is opening a new lab at EMBL Hamburg and is now hiring. Highly recommended - a fantastic opportunity to do top-notch science in phage biology and bacterial immunity
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Reposted by Taras Pogorelov
Sukrit Singh @sukritsingh92.bsky.social · 07/07/2026
New preprint! Do all kinase domains have similar activation mechanisms? We steer AlphaFold2 using "transfer seeding" of known kinases to sample 8.3 ms of MD simulations via Folding@home. We find unique pathways that are kinase-specific and depend on different elements! Link: doi.org/10.64898/202...
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Nature @nature.com · 06/07/2026
Rice plants have found a way to resist heatwaves go.nature.com/4wpm75C
go.nature.com
Plant membranes shuffle lipids around to stay firm under heat stress
High temperatures make cell membranes weak and leaky. Rice plants rapidly counteract this effect by adjusting membrane lipid content, enabling them to resist heatwaves.
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Markus Deserno @markusdeserno.bsky.social · 23/06/2026
📣 Hear! Hear! 🦋 Behold this Bluetorial on a cool paper written with my PhD student Nathaniel Wesnak 🧪 If you want to dive into the rabbit hole of lipid flop-flop and its description as a stochastic process—here’s your TEASER TRAILER on some flippin’ awesome work: doi.org/10.1063/5.03... 1/26
doi.org
Stochastic process description of lipid flip-flop
Since lipid bilayers are self-assembled macroscopic aggregates, their constituent lipid molecules can spontaneously transition between the two leaflets. This so
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Reposted by Taras Pogorelov
MPI for Multidisciplinary Sciences @mpi-nat.bsky.social · 20/03/2026
Save the date 📅: @horizonsmolbio.bsky.social Symposium 2026 Look forward to an international conference from Sep 7 to 10 at our institute – you can expect exciting scientific presentations from fields such as cell biology, structural biology, bioinformatics, neuroscience, genomics, and immunology. 👇
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Nigel Goldenfeld @nigelgoldenfeld.bsky.social · 10/05/2026
A very concise and informative thread on the origin of the eukaryotic cell. Focus is membrane traffic. Includes a surprising hypothesis and prediction, subsequently verified. Recommend the review too!
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Ville Kaila @kailalab.bsky.social · 10/05/2026
Happy to share how low-barrier hydrogen bonds power PCET reactions in metal-free RNRs - now out in PNAS! So proud of my lab & for great collaboration w Heberle, Kasanmascheff & Högbom Labs. Thank you @kawresearch.bsky.social for long-term support of our research! www.pnas.org/doi/10.1073/...
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Reposted by Taras Pogorelov
Ville Kaila @kailalab.bsky.social · 09/05/2026
Check out our latest paper – today out in JACS - on proton gates in the antiporter modules of Complex I! So proud of my amazing lab – Sofia Badolato, Sarah Rossmann & Hyunho Kim – and thank you @kawresearch.bsky.social for long-term support of our work. pubs.acs.org/doi/10.1021/...
pubs.acs.org
Molecular Principles of Gating Proton Transport in the Antiporter Modules of Respiratory Complex I
The respiratory Complex I is a highly intricate redox-driven proton pump that powers oxidative phosphorylation across all domains of life. Yet, despite major efforts, its long-range energy transductio...
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Reposted by Taras Pogorelov
Syma Khalid @sykhalid.bsky.social · 08/05/2026
Now out: www.nature.com/articles/s41...
nature.com
Assembly of two functionally-distinct protein import complexes in the outer membrane of plant chloroplasts - Nature Communications
Chloroplasts import thousands of nucleus-encoded proteins via multiprotein translocons. The authors elucidate the assembly and molecular architecture of the outer-membrane TOC translocon (the import “...
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Reposted by Taras Pogorelov
Artemy Kolchinsky @artemyte.bsky.social · 05/05/2026
How does phase separation, a key mechanism of equilibrium self-organization, interact with nonlinear nonequilibrium dynamics? In our paper with Jonathan Bauermann and Giacomo Bartolucci @gbart.bsky.social, we look at phase separation in chemical oscillators journals.aps.org/prl/abstrac...
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Reposted by Taras Pogorelov
Steffen Wolf @herrflow.bsky.social · 03/05/2026
...and the second PhD position opening in my group: one three-year position for performing simulations on the allostery of the chaperone Hsp90. The project includes a close collaboration with experimentalists from the group of Thorsten Hugel at Freiburg University. Apply here: #compchem #biophysics
karriere.h-da.de
Wissenschaftliche/n Mitarbeiter*in (65%)
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Reposted by Taras Pogorelov
Simons Foundation @simonsfoundation.org · 28/04/2026
@flatironinstitute.org senior research scientist Pilar Cossio builds crucial tools to reveal how environmental changes alter the behavior of RNA: bit.ly/48rCAg2 #science #biology
bit.ly
Pilar Cossio: Reconstructing RNA’s Shapeshifting Behavior
Flatiron Institute researcher Pilar Cossio builds tools to analyze experimental measurements and reveal how environmental changes alter the behavior of RNA molecules.
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OHSU-MMI @ohsummi.bsky.social · 28/04/2026
The Department of Molecular Microbiology and Immunology is looking to grow! We opened a position for an assistant or associate professor, please distribute ! facultycareers-ohsu.icims.com/jobs/39006/a...
facultycareers-ohsu.icims.com
Faculty Portal | OHSU
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Siewert-Jan Marrink @cg-martini.bsky.social · 14/04/2026
pubs.acs.org
Martini 3 Coarse-Grain Model For Linear Perfluoroalkyl Substances
Perfluoroalkyl substances (PFAS) are a family of over seven million chemicals found in a vast number of industrial and consumer applications. Often referred to as the “forever chemicals,” they have ga...
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Reposted by Taras Pogorelov
EMBL @embl.org · 31/03/2026
Welcome, Tony Hyman! EMBL welcomes its new Director General, Tony Hyman, as he takes up the mandate of leading EMBL's six sites. www.embl.org/news/embl-an...
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Jan Stevens @janstevens.bsky.social · 31/03/2026
The Quantitative Cell Biology institute (QCB) at UIUC is hosting a summer school on studying living cells, both computationally and experimentally. Participants choose a theme: whole-cell computational modeling (Martini + Lattice Microbes), MINFLUX, or AFM-IR. Registration is free!
A snapshot from a whole-cell Lattice Microbes simulation of the JCVI-syn3A minimal. Credit: Thornburg et al., Cell (2026)
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Kresten Lindorff-Larsen @lindorfflarsen.bsky.social · 29/03/2026
“The glass must be absolutely transparent for one to perceive the mud at the bottom” 💪 doi.org/10.1063/5.03...
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American Association for the Advancement of Science @aaas.org · 26/03/2026
Join us in congratulating the new 2025 AAAS Fellows class! This distinction is among the highest in the scientific community and honors scientists, engineers, and innovators whose efforts on behalf of science and its applications are scientifically or socially distinguished. bit.ly/4svrgaB
The image features a blue background with the AAAS logo at the top. Text reads "Congrats to the 2025 AAAS Fellows" in white. A gold emblem is centered at the bottom.
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xavier salvatella @xsalvatella1.bsky.social · 16/03/2026
Happy to announce that my institution, @irbbarcelona.org, is opening two group leader positions, 1 in chemical biology and 1 in structural biology, to strengthen our expertise in molecular sciences: please spread the word !
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Reposted by Taras Pogorelov
Association for Computing Machinery @acm.org · 18/03/2026
Congratulations to Charles H. Bennett and Gilles Brassard on receiving the 2025 ACM A.M. Turing Award! They are recognized for their essential role in establishing the foundations of quantum information science and transforming secure communication and computing. awards.acm.org/turing @umontreal
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Davide Castelvecchi @castelvecchi.bsky.social · 18/03/2026
My latest www.nature.com/articles/d41...
nature.com
Founders of quantum information win top prize in computer science
Turing Award winners Gilles Brassard and Charles Bennett pioneered ideas that are now foundational to quantum computers and quantum communications.
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Markus Deserno @markusdeserno.bsky.social · 16/03/2026
📣 To celebrate Biophysics Week, the Membrane Structure and Function Subgroup (MSAF) of @biophysicalsoc.bsky.social will host a webinar on March 24 at 11am EDT. Our speakers are @mejohnson81.bsky.social, @ibudin.bsky.social, and Cecília Leal (not on 🦋). 🧪 👀 More info in the alt text! Please share! 🔄
Curve Appeal: The Architecture and Engineering of Membrane Bending

This webinar, hosted by the Membrane Structure & Function Subgroup of the Biophysical Society, and organized by Adam Smith, will highlight how lipid composition, protein assemblies, and membrane mechanics work together to generate and regulate membrane curvature in cells. Three invited speakers will present on membrane bending in a way that's accessible to undergraduate students interested in biochemistry and biophysics, with sufficiently many fun new things sprinkled in to also be interesting to specialists in the field.

Invited speakers are:
   Itay Budin (UC San Diego)
   Margaret E. Johnson (Johns Hopkins University)
   Cecília Leal (University of Illinois Urbana–Champaign).

Sign-up link for the webinar:

https://my.biophysics.org/Events/Calendar-Of-Events/Meeting-Home-Page?meetingid=95b51c20-8219-f111-8342-7ced8d22117d

We hope to have as lively an event as we had a year ago, when we also hosted a biophysics membrane webinar! Log in—it'll be fun!

Please share widely!
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Kresten Lindorff-Larsen @lindorfflarsen.bsky.social · 16/03/2026
We are hiring a postdoc in computational biophysics and machine learning studies of intrinsically disordered proteins We aim to study the function of IDPs by combining CG MD, ML and bioinformatics in collaboration with @tanjamittag.bsky.social & @rhp-lab.bsky.social tinyurl.com/REWIRE-PD
Postdoc position:Computational Biophysics of Disordered Proteins, Lindorff-Larsen group, University of Copenhagen, Denmark

https://tinyurl.com/REWIRE-PD
Deadline May 3rd, 2026
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Siewert-Jan Marrink @cg-martini.bsky.social · 15/03/2026
pubs.acs.org
Martini 3 as a Transferable Force Field for Lipopolysaccharide Parametrization
Lipopolysaccharides (LPS), as critical components of the outer membrane (OM) of Gram-negative bacteria, play essential roles in maintaining bacterial integrity and mediating environmental interactions...
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Michael J. Robertson @biophysicsguy.bsky.social · 11/03/2026
Excited to share our work is out in @Nature ! We used TR cryo-EM to visualize the activation of Gi1 and G11 from NTSR1. With MD sims & work from the Blanchard and Lambert Labs, this revealed key differences driving signaling efficiency between G-proteins. www.nature.com/articles/s41...
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Biophysical Paris @parisseminar.bsky.social · 11/03/2026
swafferlab.co.uk/size-and-gro...
swafferlab.co.uk
Cell Size & Growth
Cell Size & Growth is a fortnightly online seminar series showcasing the latest research into cellular size, growth, scaling and biosynthesis.
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Syma Khalid @sykhalid.bsky.social · 10/03/2026
Our latest paper in which we use multiple force fields to recover various conformations of the ribose transporter from E. coli. The work of DPhil student Nikolai Juraschko and postdoc Florencia Klein Rocha pubs.acs.org/doi/full/10....
pubs.acs.org
Characterizing the Conformational Dynamics of the Ribose Transporter B Protein in Escherichia coli: Enhanced Sampling via Multiple Force Fields
We present a molecular dynamics simulation study of the E. coli ribose transporter protein B (RbsB), a conformationally labile protein found in the periplasm of the bacterium. The ribose transporter e...
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Kresten Lindorff-Larsen @lindorfflarsen.bsky.social · 07/03/2026
Don’t hide the good stuff in the SI In 2008, we published a paper on parameterizing force fields for unfolded proteins using NMR data, developing an early HPS model for intrinsically disordered proteins. The paper showed the idea, validation with synthetic data, and applications to real proteins.
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John Rubinstein @johnrubinstein.bsky.social · 06/03/2026
I've written a review on what I think is an extremely exciting direction in cryo-EM: Cryo-EM of endogenous membrane proteins in their native lipid bilayer Open access in Quarterly Reviews of Biophysics: doi.org/10.1017/S003...
Figure 1. Cryo-EM of abundant protein complexes in native membranes.Figure 2. Cryo-EM of membrane proteins in vesicles.Figure 3. 3D reconstruction of V-ATPase in native synaptic vesicle membranes.Figure 4. Generation of membrane vesicles for structure determination of proteins in their native lipid bilayer.
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Levental Lab @leventallab.bsky.social · 06/03/2026
Agreed!! A very exciting direction in structural biology
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