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Ronan McCarthy

@ronanmccarthy.bsky.social
1K followers 220 following 43 posts

Professor at Brunel University of London. Into all things Antibiotic Resistance, Drug Discovery, Biofilms and Signalling

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Reposted by Ronan McCarthy
Marcos Bermejo Ruiz @marcosbermejo.bsky.social · 14/09/2026
Going beyond Hi-C metagenomics! In our new pre-print, we adapt the Micro-C protocol to microbiomes. Achieving higher resolution, we recovered 3D genomes and bacterial-plasmid links. Check it here: www.biorxiv.org/content/10.6... @microbiome.bsky.social
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Freya Harrison @friendlymicrobe.bsky.social · 01/09/2026
The use of Galleria mellonella to study microbial interactions, immune responses, & substrate interactions - super, comprehensive review from Evgenia Maslova, Ciaram Staber & @ronanmccarthy.bsky.social portlandpress.com/essaysbioche... #MicroSky
Schematic representation of G. mellonella applications for investigating interbacterial interactions
The upper half (A) of the figure depicts experimental methods in which bacteria are introduced to G. mellonella larvae. These include force-feeding, injection, and burn models. The lower half (B) shows example interactions described in the literature within the G. mellonella model, including antagonistic, competitive, and cooperative co-infection outcomes.
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Josie Bryant @josiebryant.bsky.social · 08/07/2026
Very proud of this preprint out of my lab, our first (of hopefully many) host-microbe spatial transcriptomics paper. www.biorxiv.org/content/10.6... Amazing insights into P. aeruginosa biology and chronic airway disease @cysticfibrosis.org.uk @sangerinstitute.bsky.social @asthmaandlung.org.uk
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Kevin Forsberg @kvnforsberg.bsky.social · 02/07/2026
Humans and bacteria share strategies to defend against viruses. We wondered: could they use each other's genes? Yes, both can! Bacteria can use human immune genes to defend against phages AND Human cells can use bacterial genes for viral defense. www.biorxiv.org/content/10.6...
biorxiv.org
Bacterial and human exonucleases mediate interkingdom antiviral immunity
All kingdoms of life have developed strategies to limit viral infection. In humans, interferons induce a suite of antiviral factors that collectively provide immunity. Some human immune genes are homo...
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Seána Duggan @seanaduggan.bsky.social · 26/06/2026
🗞️New Paper🗞️ We show that #Candida & #Staph cooperate via copper handling - with fungal copper uptake & bacterial copper export shaping the community. @mrccmm.bsky.social @microbiologysociety.org @universityofexeter.bsky.social www.microbiologyresearch.org/content/jour...
microbiologyresearch.org
Copper-driven mutualism of Candida albicans and Staphylococcus aureus interkingdom biofilms
Although fungi and bacteria commonly co-exist within polymicrobial communities, the molecular mechanisms underlying their interactions are still not well understood. Here, we show that the fungus Cand...
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 26/06/2026
Conjugation dynamics and persistence of a carbapenem resistance gene blaOXA-72 from Acinetobacter pittii to Acinetobacter baumannii www.biorxiv.org/content/10.64898/20…
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Ákos T Kovács @evolvedbiofilm.bsky.social · 06/06/2026
Flagellar toxicity: flagellar synthesis is lytic for Bacillus subtilis in the absence of PBP1 bioRxiv from Dan Kearns www.biorxiv.org/content/10.6...
biorxiv.org
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Nela Nikolic @nelani.bsky.social · 18/05/2026
We are hiring! 🔬🧫 Join our lab at the Uni Southampton as a Research Technician working on bacteria-phage interactions to develop therapies for hard-to-treat infections. 2-year post Deadline: 27 May 2026 Position start date: 1 July 2026 or shortly after Apply: jobs.soton.ac.uk/Vacancy.aspx...
southampton.ac.uk
Dr Nela Nikolic receives Springboard funding to develop approaches to tackle bacterial infections
Dr Nela Nikolic receives Springboard funding to develop approaches to tackle bacterial infections
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Erin Green @erinrgreen.bsky.social · 29/04/2026
Excited to share the final part of my postdoc work, where we investigate the impact of antimicrobial treatment on susceptibility to hospital-acquired Acinetobacter baumannii pneumonia. Thanks to our amazing group of collaborators for their contributions to this study! www.pnas.org/doi/10.1073/...
pnas.org
The intestinal microbiota impacts nutritional immunity and resistance to Acinetobacter baumannii pneumonia | PNAS
Broad-spectrum antibiotics are frequently administered to intensive care unit patients as part of empiric care. This treatment has been associated ...
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Ronan McCarthy @ronanmccarthy.bsky.social · 28/04/2026
⏰ We have two exciting opportunities to join our team in Southampton! 🚀 𝐏𝐨𝐬𝐭𝐝𝐨𝐜𝐭𝐨𝐫𝐚𝐥 𝐑𝐞𝐬𝐞𝐚𝐫𝐜𝐡𝐞𝐫 (2 𝐲𝐞𝐚𝐫𝐬) 𝘈𝘤𝘪𝘯𝘦𝘵𝘰𝘣𝘢𝘤𝘵𝘦𝘳 virulence 👉 jobs.soton.ac.uk/Vacancy.aspx... 𝐑𝐞𝐬𝐞𝐚𝐫𝐜𝐡 𝐓𝐞𝐜𝐡𝐧𝐢𝐜𝐢𝐚𝐧 (3 𝐲𝐞𝐚𝐫𝐬) Engineering Biology 👉 jobs.soton.ac.uk/Vacancy.aspx...
jobs.soton.ac.uk
Job Opportunity at the University of Southampton: Research Fellow
The McCarthy Lab has an exciting opportunity for a prospective Postdoctoral Research Fellow who is interested in understanding virulence and hospital persistence in Acinetobacter baumannii. The role w...
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fillouxlab.bsky.social @fillouxlab.bsky.social · 22/04/2026
In @elife.bsky.social: Antibiotic potentiation and inhibition of cross-resistance in pathogens associated with cystic fibrosis doi.org/10.7554/eLif... Thank you Despoina for taking me on board of this nice work
doi.org
Antibiotic potentiation and inhibition of cross-resistance in pathogens associated with cystic fibrosis
Targeting disulfide bond formation disables multiple antibiotic resistance mechanisms and prevents cross-protection between pathogens associated with cystic fibrosis lung infections, restoring antibio...
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Ronan McCarthy @ronanmccarthy.bsky.social · 14/04/2026
Enjoying that diet coke? Ever wondered what it is doing to bacteria living in your body? Here we examine the current evidence on how artificial sweeteners influence the microbiome and bacterial physiology & the gaps in research. @cp-trendsmicrobiol.bsky.social www.sciencedirect.com/science/arti...
sciencedirect.com
The impact of artificial sweeteners on bacterial physiology and the microbiome
Artificial sweeteners are non-nutritive compounds that have a profound sweetening effect with a negligible to zero calorific contribution. Global init…
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Reposted by Ronan McCarthy
Melanie Blokesch @mblokesch.bsky.social · 10/04/2026
Excited to share our new paper out today in @science.org 🎉 We show that HGT via natural competence drives diversification of chromosomal integrons in V. cholerae 🤩 Below a 🧵 on key findings incl. background on natural competence in V. cholerae 1/ #microsky #phagesky www.science.org/doi/10.1126/...
science.org
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Siobhán O'Brien @siderophile.bsky.social · 07/04/2026
New data from the lab, showing how fungicides can drive rapid selection for multidrug resistance In soil bacteria - even under warming. This was probably the most clear cut data I’ve ever seen (collected by @kelbrick.bsky.social), with clear selection on efflux pump regulator PFLU_3160. Enjoy!
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Vivek Mutalik @vivekmutalik.bsky.social · 03/04/2026
📣Huge preprint 🔔 Today we share something our group has been working toward for a long time, led by @lucasmoriniere.bsky.social We asked can we predict which receptor a phage targets from its genome sequence alone? For most phages, we couldn’t. So Lucas set out to do something I had only dreamed of.
Phage receptor prediction from genome sequencing alone. Bacterial receptor (blue) interacting with phage proteins (purple) is shown here
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Tatiana Dimitriu @tatianadimitriu.bsky.social · 02/04/2026
And the preprint is out! www.biorxiv.org/content/10.6... We compared plasmid conjugation in liquid and on solid across 13 AMR plasmids with different types of conjugative pili.
biorxiv.org
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José R Penadés @jrpenades.bsky.social · 31/03/2026
This paper started as an idea @albertomarina.bsky.social had many years ago… which of course means he was right all along 😄. Some of us just needed a few years (and a lot of experiments) to catch up. Grateful (and slightly humbled) to be part of this. Thanks Alberto! www.cell.com/cell/fulltex...
cell.com
Phages communicate across species to shape microbial ecosystems
Gallego-del-Sol et al. show that arbitrium-coding phages can sense non-cognate peptide signals from other phages to regulate lysis-lysogeny decisions. This crosstalk affects lysis-lysogeny outcomes of...
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Rachel M. Wheatley @rachelmwheatley.bsky.social · 30/03/2026
🔊 Looking for a Research Assistant in Bacterial Evolution to join my lab 🦠 🥼Main duties: Research (AMR + microbiome) + lab assistance. ⏲️ Post duration: 30 months 🗓️ Closing date for applications: 20th April 2026 💰 Salary: ~£35k Details and how to apply: tinyurl.com/2a3v66y7 Please share!
lnkd.in
LinkedIn
This link will take you to a page that’s not on LinkedIn
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Kavita Gadar @kavitagadar.bsky.social · 25/03/2026
Throwback to some of my PhD work! We uncovered the antimicrobial activity of tormentil, a traditional medicinal plant, identifying compounds with activity against MDR bacteria and the ability to enhance colistin efficacy. Really proud of this one ☺️ www.microbiologyresearch.org/content/jour...
microbiologyresearch.org
Bogland plant Tormentil inhibits multidrug-resistant pathogen growth and potentiates antibiotics by disrupting iron homeostasis
The antibiotic resistance crisis has created an urgent need for the development of novel therapeutic strategies to tackle recalcitrant infections. In this study, we identified Tormentil [Potentilla er...
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Uli Klümper @ulikluemper.bsky.social · 27/03/2026
🌊🦠Our latest work on water treatment now available as a @biorxivpreprint 🌊🦠 “Reusable immobilised quaternary ammonium particles reduce microbial and resistome burdens without promoting #AMR selection during wastewater post-treatment” 🔗 biorxiv.org/content/10.6... 1/5
biorxiv.org
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Courtney Ellison @ckellison.bsky.social · 26/03/2026
I am pleased to share my lab’s latest publication - Acinetobacter species lack canonical DNA repair pathway activation mechanisms, and we discovered a conserved transcriptional activator that fills this role: academic.oup.com/nar/article/...
academic.oup.com
A WYL transcriptional regulator activates the DNA damage response pathway in Acinetobacter species
Abstract. The ability to sense DNA damage and activate DNA damage response pathways is critical for repairing DNA damage in all domains of life. The most w
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Grainger Lab @graingerlab.bsky.social · 24/03/2026
Two post-doctoral positions open in our lab. We're looking for people with expertise in molecular microbiology and/or genome-scale tools. Initially 3 yrs, posts could be extended for upto 8 yrs. If you'd like to know more about us take a look at www.graingerlab.com www.jobs.ac.uk/job/DQY475/r...
jobs.ac.uk
Research Fellow (Postdoctoral) at University of Birmingham
Explore an exciting academic career as a Research Fellow (Postdoctoral). Don't miss out on other academic jobs. Click to apply and explore more opportunities.
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Sorek Lab @soreklab.bsky.social · 21/03/2026
A defense system that protects against RNA viruses by sensing a conserved RNA structure in the viral genome - cool!
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Ákos T Kovács @evolvedbiofilm.bsky.social · 21/03/2026
Reversible DNA condensation drives natural transformation @natcomms.nature.com from Keith Mickolajczyk, Matthew Neiditch, and David Dubnau www.nature.com/articles/s41...
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Chris Stewart @stewartlab.bsky.social · 18/03/2026
🚨 A new piece of the preterm gut microbiome puzzle just fell into place! Bifidobacterium metabolise human milk oligosaccharides (HMOs) in early life — shaping immunity, supporting gut development, and protecting against diseases like necrotising enterocolitis (NEC). www.nature.com/articles/s41...
nature.com
Clostridia from preterm infants metabolize human milk oligosaccharides to suppress pathobionts and modulate intestinal function in organoids - Nature Microbiology
Clostridium perfringens lacking perfringolysin O toxin isolated from preterm infants metabolizes human milk oligosaccharide disialyllacto-N-tetraose to produce metabolites that promote the growth of c...
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Patricia Bernal @pbernalt6ss.eurosky.social · 14/03/2026
Still not in the final format but couldn't wait to share it with you, after a long jpurney to get here. Our latest work (with @davidalbesa.bsky.social lab) on Tke5 T6SS toxin from my favourite bug P. putida KT2440. 🧵 1/5 www.nature.com/articles/s42...
nature.com
Tke5 is a Pseudomonas putida toxin that kills plant pathogens by depolarising membranes - Communications Biology
Physiological and biophysical studies of Tke5 reveal is a pore-forming toxin that kills resilient phytopathogens via ion-selective membrane depolarisation. Neutralised by Tki5, Tke5 offers a targeted ...
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Prof. Ruth Ley FRS @microbiome.bsky.social · 14/03/2026
Announcing StrainVis! 🦠🧫🧪 www.biorxiv.org/content/10.6... This nifty web-based tool allows you to visualize your strain level analyses. You can combine ANI and synteny based analyses and it will make all kinds of cool publication ready plots for you - examples follow. By Hagay Enav and Inbal Paz:
biorxiv.org
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Tracy Palmer @proftracypalmer.bsky.social · 12/03/2026
2 year fellowship available in AMR research www.medicalresearchfoundation.org.uk/grants/antim...
medicalresearchfoundation.org.uk
Medical Research Foundation | Antimicrobial Resistance Research
Antimicrobial Resistance Research
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masseylab.bsky.social @masseylab.bsky.social · 07/03/2026
Lovely work driven by Lizzie Ledger in the group: a new but druggable mechanism by which Staphs produce biofilm using components of human serum. First polysaccharides, then protein, then eDNA, now lipids too! bsky.app/profile/bior...
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William L King @drmicrowill.bsky.social · 26/02/2026
Hiring two postdocs, 3-years each, at @unisouthampton.bsky.social. We're investigating bat guano in Mexico One postdoc in my group - plant/soil micro/microbiome: tinyurl.com/2zu8nrmv One postdoc in bat ecology + ecoservices: tinyurl.com/27attrsc Deadline March 30 @sotonbiosciences.bsky.social
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Wim Meijer @wimgmeijer.bsky.social · 15/02/2026
The emergence of a chemical system capable of self-replication and evolution is a critical event in the origin of life. This paper describes a ribozyme, a catalytic RNA molecule, able to do just that.. Fascinating stuff… 🧪🦠 www.science.org/doi/10.1126/...
science.org
A small polymerase ribozyme that can synthesize itself and its complementary strand
The emergence of a chemical system capable of self-replication and evolution is a critical event in the origin of life. RNA polymerase ribozymes can replicate RNA, but their large size and structural ...
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Grainger Lab @graingerlab.bsky.social · 06/02/2026
In our most recent work David Forrest has discovered a widespread mechanisms linking transcription initiation to DNA supercoiling... www.nature.com/articles/s41...
nature.com
The bacterial RNA polymerase-associated CarD protein couples promoter activity to DNA supercoiling - Nature Communications
The transcription factor CarD facilitates the activation of transcription in many bacteria and in Rhodobacter sphaeroides, CarD compensates for suboptimal promoter DNA sequences. Here, the authors sho...
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Microbiology Society @microbiologysociety.org · 22/01/2026
Invasive Acinetobacter baumannii ABC141 strain relies on the twin-arginine translocation export system for adhesion to host cells. Published Open Access and fee-free in Microbiology using a Publish and Read agreement: doi.org/10.1099/mic.... #MicrobioJ #PublishAndRead
The defect of the ΔtatABC mutant adhesion is specifically due to the lack of the tatABC operon.
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Alasdair Hubbard @dralhubb.bsky.social · 21/01/2026
🚨 Fully‑funded PhD for Home Students🚨 We'll explore non-antibiotic alternatives in relatistic environments, uncovering how they work, if they affect antibiotic activity and whether they influcence AMR acquistion. Come join a wonderful supervisory team! #MicroSky #UTISky #AMar tinyurl.com/38u552bu
tinyurl.com
Optimising the use of alternative therapies for the treatment of urinary infections - The University of Nottingham
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Ronan McCarthy @ronanmccarthy.bsky.social · 20/01/2026
Delighted to share our latest work exploring the regulation of desiccation tolerance in Acinetobacter baumannii. Great effort by @lharkova.bsky.social and @rdedios.bsky.social www.microbiologyresearch.org/content/jour...
microbiologyresearch.org
Phenylacetic acid mediates Acinetobacter baumannii entry into a viable but non-culturable state
Desiccation tolerance is central to the pathogenic success of the opportunistic pathogen Acinetobacter baumannii, allowing its survival on hospital surfaces in the absence of water and nutrients for m...
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Patricia Bernal @pbernalt6ss.eurosky.social · 14/01/2026
I am thrilled to share with you the outcome of the first collaboration with Albesa-Jove's lab (albesalab.org), in which we characterised the molecular mechanisms underlying the binding of a T6SS adaptor-effector pair in P. putida, Tap3–Tke5. (🧵1/9). Read the full paper here: doi.org/10.1038/s443...
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Nela Nikolic @nelani.bsky.social · 17/01/2026
PhD studentship available: Join the phage frontline against AMR! 🧫 🔬 Funded by Wessex Medical Research × Rosetrees Trust. With @fnobrega.bsky.social, Prof Saul Faust (NIHR Southampton), Dr Liz Sheridan (NHS Dorset). Info & Apply → www.findaphd.com/phds/project... Email me for informal enquiries
findaphd.com
Next-generation phage therapeutics for combating antibiotic-resistant infections at University of Southampton on FindAPhD.com
PhD Project - Next-generation phage therapeutics for combating antibiotic-resistant infections at University of Southampton, listed on FindAPhD.com
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Franklin Nobrega @fnobrega.bsky.social · 17/01/2026
Preprint out: We characterise PUA-Cal-HAD, a widespread bacterial antiphage defence family. An infection cue switches a preassembled complex into an immune filament that drains dNTPs via a coupled two-enzyme cascade, and phage DNA mimics can block filament assembly (anti-polymerisation).
biorxiv.org
A methylome-derived m6-dAMP trigger assembles a PUA-Cal-HAD immune filament that depletes dNTPs to abort phage infection
Bacteria must distinguish phage attack from normal homeostatic processes, yet the danger signals that trigger many defence systems remain unknown. Here, we show that a PUA-Calcineurin-CE-HAD module from Escherichia coli ECOR28 confers broad anti-phage protection by binding Dam-methylated deoxyadenosine monophosphate (m6-dAMP) generated during phage-induced chromosome degradation. Ligand binding converts a preassembled PUA-Calcineurin-CE hexamer loaded with six HAD phosphatases into a polymerising filament. The filament acts as a high-flux dNTP sink through a two-enzyme cascade: HAD first dephosphorylates dATP to dADP, and Calcineurin-CE then converts dADP to dAMP. dNTP collapse halts phage replication and enforces abortive infection. Multiple mobile-element DNA mimic proteins block filament assembly, revealing a direct phage counter-defence. More broadly, our findings extend a conserved, cross-kingdom paradigm of immune filament assembly to nucleotide-depletion antiviral defence and suggest modified-nucleotide sensing by related PUA-Calcineurin-CE modules as a widespread, underappreciated bacterial strategy. ### Competing Interest Statement The authors have declared no competing interest. NIHR Southampton Biomedical Research Centre, https://ror.org/01qqpzg67, Postdoctoral Bridging Fellowship F.L.N. is supported by a Wessex Health Partners (WHP) and National Institute for Health and Care Research Wessex Experimental Medicine Network (NIHR WEMN), Seed fund National Institutes of Health, GM145888, U24 GM129539) Maloris Foundation Memorial Sloan Kettering Cancer Center, P30-CA008748 Simons Foundation, SF349247 New York State Assembly
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Ronan McCarthy @ronanmccarthy.bsky.social · 09/01/2026
Fascinating
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Microbiology Society @microbiologysociety.org · 22/12/2025
Gene dependence during mammalian Acinetobacter baumannii pneumonia and septicaemia infections. Published Open Access and fee-free in MGen using a Publish and Read agreement: doi.org/10.1099/mgen... #MGen #PublishAndRead
Diagram of genes required for in vivo fitness in different organs displayed as bar graphs
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Kavita Gadar @kavitagadar.bsky.social · 19/12/2025
I had a great time chatting with 7th and 8th graders in New York through @skypeascientist.bsky.social! We covered things from antibiotics resistance to what it’s like to be a researcher. Their curiosity and questions really reminded me why sharing science matters 💡🙌
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Ronan McCarthy @ronanmccarthy.bsky.social · 18/12/2025
Delighted to share the latest from the lab where we explore the efficacy of over-the-counter wound care products against bacterial biofilms (Spoiler Alert: Some are much better than others) academic.oup.com/jacamr/artic...
academic.oup.com
Comparative study of common over-the-counter wound care products against early and mature biofilms of antibiotic-resistant wound pathogens
AbstractBackground. The global rise of antimicrobial resistance requires innovative and affordable wound care solutions. Moreover, managing wounds infected
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Andy Edwards @bugsinblood.bsky.social · 03/12/2025
We're advertising for a bacteriology technician and a post-doc to work on AI-guided antibiotic development as part of a large multidisciplinary Fleming Initiative project: www.imperial.ac.uk/jobs/search-... www.imperial.ac.uk/jobs/search-...
imperial.ac.uk
Description
Please note that job descriptions are not exhaustive, and you may be asked to take on additional duties that align with the key responsibilities ment...
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Nela Nikolic @nelani.bsky.social · 26/11/2025
PhD Opportunity: Advance UTI treatment with on-chip tech! 🔬🧫 Work at the microbiology-bioengineering interface with Hywel Morgan, @fnobrega.bsky.social and me. Program EPSRC/MOD CISDnS CDT cisdns-cdt.ac.uk Co-funded by IfLS Southampton tinyurl.com/infoUTI tinyurl.com/applyUTI Deadline: 8 Dec 2025
tinyurl.com
Advancing urinary tract infection treatment through on-chip technological innovation at University of Southampton on FindAPhD.com
PhD Project - Advancing urinary tract infection treatment through on-chip technological innovation at University of Southampton, listed on FindAPhD.com
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Jessica Blair @jessicamablair.bsky.social · 18/11/2025
Really excited to say that we have been awarded a BBSRC sLola! Really looking forward to kick off this project with such a fantastic team! @webberma.bsky.social @overtonlab.bsky.social @bugsinblood.bsky.social Sara Jabbari, Dong-Hyun Kim @imibirmingham.bsky.social www.ukri.org/news/powerin...
ukri.org
Powering team science to unlock life’s secrets
Four world-class teams awarded major BBSRC sLoLa grants to push the frontiers of discovery in microbiology, photosynthesis, gene regulation and quantum biology.
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Connor Sharp @magicmicrobe.bsky.social · 05/11/2025
So happy to share this! Bacteriocins were first discovered over 100 years ago, but what do they actually do? We look at >1000 bacteriocin plasmids and find links to virulence and antimicrobial resistance, and frequent bacteriocin sharing in Enterobacteriaceae. www.nature.com/articles/s41...
nature.com
Bacterial warfare is associated with virulence and antimicrobial resistance - Nature Communications
Bacteria employ a range of competition systems that deliver toxins to inhibit competing strains. This study shows that these systems are particularly important for the ecology of virulent and antibiot...
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James Connolly @ruamicro.bsky.social · 02/11/2025
If you are interested in researching how drug resistant bacteria evade killing by our immune system, them this PhD project is for you. Come join the our team at Newcastle, in collaboration with University of Liverpool, and lead research at the interface of microbiology, immunology and metabolomics.
findaphd.com
MRC DiMeN Doctoral Training Partnership: Hiding in plain sight: How multi-drug resistant pathogens evade detection and killing by human neutrophils at Newcastle University on FindAPhD.com
PhD Project - MRC DiMeN Doctoral Training Partnership: Hiding in plain sight: How multi-drug resistant pathogens evade detection and killing by human neutrophils at Newcastle University, listed on Fin...
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