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Siobhán O'Brien

@siderophile.bsky.social
518 followers 88 following 55 posts

Assistant Prof @ Trinity College Dublin. Microbial Ecology & Evolution. Eurovision fanatic. Mammy of two party animals. Probably awake. 🇮🇪

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Reposted by Siobhán O'Brien
Meaghan Castledine @mcastd.bsky.social · 10/09/2026
🦠Fully funded PhD project with myself, Angus Buckling, Jo Lello and Phil Mitchelmore🦠 How should we design phage therapeutics for bacterial co-infections? How do interactions between pathogens affect treatment efficacy? Please get in touch if you have any Qs 💃 shorturl.at/39Xea
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Siobhán O'Brien @siderophile.bsky.social · 28/08/2026
really enjoyed this, finally some really solid data on the question of whether cross-feeding actually matters in soil. A great mix of wet-lab experiments and genomics that feed into each other beautifully.
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Sadhbh Dodd @sadhbhnidhubhda.bsky.social · 24/08/2026
So lovely to have finished the last conference of my PhD in the same place that I started 4 years ago🥹 talk about a full circle moment !
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Siobhán O'Brien @siderophile.bsky.social · 21/08/2026
And that’s a wrap on #MENI2026! What a great day of microbial evolution research, and a pleasure to host at Trinity with @paulinedscanlan.bsky.social
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Rebecca J Hall @drrebeccajhall.bsky.social · 20/08/2026
Looking forward to a full day of microbial evolution today! I’ll be talking this morning about evolution of AMR from my work with @alanmcn1.bsky.social
Poster that reads ‘Microbial Evolution Network Ireland’
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John Innes Centre @johninnescentre.bsky.social · 17/08/2026
VACANCY - Funded by @European Research Council (ERC), we have three exciting opportunities for Postdoctoral Researchers to join the newly appointed Dr @hassansalem.bsky.social Group. These roles span: Developmental biology - okt.to/nq50wC 🧵
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Siobhán O'Brien @siderophile.bsky.social · 12/08/2026
You're welcome www.youtube.com/live/YTuzmAu...
youtube.com
Non-Stop Eclipse! Eurovision Song Contest songs for the solar eclipse #Eurovision
YouTube video by Eurovision Song Contest
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Siobhán O'Brien @siderophile.bsky.social · 05/08/2026
New paper with @kelbrick.bsky.social and @jpjhall.bsky.social - we show that fungicides select for multidrug resistant bacteria in soil via shared resistance mechanisms (efflux) onlinelibrary.wiley.com/doi/10.1111/...
onlinelibrary.wiley.com
Fungicide Drives <fi>De Novo</fi> Evolution of Multidrug Resistance in the Plant Growth Promoting Rhizobacterium, <fi>Pseudomonas fluorescens</fi>
Soil microbial communities underpin key ecosystem processes, including plant health, nutrient cycling and primary productivity. In agricultural soils, beneficial soil bacteria are often exposed to mu...
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Ákos T Kovács @evolvedbiofilm.bsky.social · 04/08/2026
Fungicide Drives De Novo Evolution of Multidrug Resistance in the Plant Growth Promoting Rhizobacterium, Pseudomonas fluorescens Evolutionary Applications by @kelbrick.bsky.social, @jpjhall.bsky.social and @siderophile.bsky.social onlinelibrary.wiley.com/doi/10.1111/...
onlinelibrary.wiley.com
Fungicide Drives <fi>De Novo</fi> Evolution of Multidrug Resistance in the Plant Growth Promoting Rhizobacterium, <fi>Pseudomonas fluorescens</fi>
Soil microbial communities underpin key ecosystem processes, including plant health, nutrient cycling and primary productivity. In agricultural soils, beneficial soil bacteria are often exposed to mu...
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James Orr @jamesaorr.bsky.social · 01/08/2026
One of ecology’s oldest questions - how does population growth change as density increases? - remains surprisingly contentious. In our new @plosbiology.org paper we contribute to the ongoing debate by applying the idea of “Growth-Density Inversion”: doi.org/10.1371/jour.... 1/6
doi.org
Growth-density inversion in Escherichia coli reveals superlinear, not sublinear, density dependence
Sublinear density dependence has been widely reported empirically, but this is at odds with resource competition theory. This study uses a tightly controlled test in a microbial model system to reveal...
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PLOS Biology @plosbiology.org · 20/07/2026
Sublinear #DensityDependence is widely reported empirically, but is at odds with theory. @jamesaorr.bsky.social &co use a tightly controlled test in a microbial model system to reveal superlinear density dependence, so aligning empirical evidence with theory @plosbiology.org 🧪 plos.io/4vwAmEZ
Top: Schematic of the empirical application of growth-density inversion, where the classic density dependence perspective (blue) is inverted (green) to overcome the challenges of manipulating densities. The authors first parametrised a consumer-resource model using batch culture growth assays (Approach 1) and performed growth-density inversion analytically (Box 1). Then, in a model-free empirical implementation of growth-density inversion, they experimentally manipulated harvest rate and quantified densities at equilibrium by varying the dilution rate in a chemostat system (Approach 2). Bottom left: Parametrised Monod growth function with 100 posterior draws representing uncertainty. The inset shows the analytical prediction for the density dependence of this parametrised consumer–resource model. Bottom right: Inverse-logistic model fitted to the experimental data with 95% credible intervals. Inset shows the same data and model with axes inverted to give the classic density dependence perspective.
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Siobhán O'Brien @siderophile.bsky.social · 29/07/2026
We rely on healthy soil microbial communities to support ecosystem functioning and plant growth, but what happens when soils are exposed to multiple environmental stressors simultaneously? Spoiler: it's not good doi.org/10.1093/isme...
academic.oup.com
Fungicide and warming interact to reduce soil ecosystem functioning
Abstract. Soil microbial communities are essential to the functioning of their ecosystems, providing vital services such as plant growth promotion and bior
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Gavan Reilly @gavreilly.com · 26/07/2026
“The famine is over! The curse be damned!! Hit the nuclear button! Mayo have won the All-Ireland!!” An all-time great sports commentary moment from Stephen Grealis and Martin McHugh on Mayo’s Midwest Radio. #gaa
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Gina Baucom @gbaucom.bsky.social · 07/07/2026
Interested in what being an Editor in Chief entails? Or just curious about the inner workings of the SSE's flagship journal, Evolution? Check out this discussion with Jason Wolf, EiC of Evolution! (No video this time bc, well, I am not an expert at video production and mistakes were made! By me!)
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Siobhán O'Brien @siderophile.bsky.social · 02/07/2026
Glen Hansard keeping me going this evening, very enjoyable grant writing
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Ben Longdon @blongdon.bsky.social · 22/06/2026
Masters by Research at @uniexecec.bsky.social in beautiful Cornwall ecologyconservation.exeter.ac.uk/masteer-coho... these are *funded* - covering home tuition fees, a research/training support grant and a prog of cohort activities. Lots of projects available (including one w/ me!) - pls share!
Penryn campus - home of CEC - views across campus and Cornish coastline
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Gina Baucom @gbaucom.bsky.social · 04/06/2026
Member action is needed. Please read the email, review the proposed SSE response, and consider signing on before the June 15 deadline. **Importantly, submit your individualized comment to OMB by July 13!** Screenshots of the full message below. ⬇️
Dear SSE Community,

I hope this message finds you well, wherever the new season has taken you. I'm writing with news that requires our community's immediate attention and action.

On May 29, the Office of Management and Budget (OMB) published a proposed rule — the largest overhaul of federal grant regulations since 2013 — that would fundamentally restructure how scientific research is funded in the United States. The comment deadline is July 13, 2026. That gives us six weeks, and we need every one of them.

Read the proposed rule.
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European Society for Evolutionary Biology @eseb.bsky.social · 21/04/2026
Safe to say that we are very excited about this here at ESEB! Huge thanks to Brian Golding for entrusting us with the fantastic service that you have created and curated for the years! Follow @evoldir.bsky.social
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Siobhán O'Brien @siderophile.bsky.social · 20/04/2026
Just over two weeks left to register for MENI 2026! A !!free!! microbial evolution meeting in Ireland with some fantastic keynote speakers @jpjhall.bsky.social @rachelmwheatley.bsky.social @drrebeccajhall.bsky.social @tweethinking.bsky.social #Evolution #microbes www.eventbrite.com/e/3rd-microb...
eventbrite.com
3rd Microbial Evolution Network Ireland meeting
2026 Microbial Evolution Network Ireland meeting, at Trinity College Dublin
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Siobhán O'Brien @siderophile.bsky.social · 13/04/2026
Of all the plagues my 1 year old has brought home from crèche, hand foot and mouth disease is definitely the cream of the crop.
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Teppo Hiltunen @teppo-h.bsky.social · 09/04/2026
Results from a long term bacteria - ciliate experiment: academic.oup.com/evolut/advan...
academic.oup.com
Universal bacterial clade dynamics dominate under predation despite altered phenotypes and mutation targets
Abstract. Recent studies have revealed bacterial genome-wide evolution to be complex and dynamic even in a constant environment, characterized by the emerg
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Siobhán O'Brien @siderophile.bsky.social · 07/04/2026
New data from the lab, showing how fungicides can drive rapid selection for multidrug resistance In soil bacteria - even under warming. This was probably the most clear cut data I’ve ever seen (collected by @kelbrick.bsky.social), with clear selection on efflux pump regulator PFLU_3160. Enjoy!
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 03/04/2026
Fungicide drives de novo evolution of multidrug resistance in the plant growth promoting rhizobacterium, Pseudomonas fluorescens www.biorxiv.org/content/10.64898/20…
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Pauline Scanlan @paulinedscanlan.bsky.social · 02/04/2026
Thanks to @siderophile.bsky.social for an excellent seminar today @uccmicrobiology.bsky.social showcasing how multiple stressors effect the ecology and evolution of soil microbes thanks to @microscrum.bsky.social for organising!
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Siobhán O'Brien @siderophile.bsky.social · 31/03/2026
Just a few weeks left to register - places are filling up fast!
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Daniel Padfield @padpadpadpad.bsky.social · 30/03/2026
PLEASE SHARE. PhD Opportunity with me, Ben Raymond and Jan Engelstaedter and Andrew Letten at University of Queensland. Experimentally testing mechanisms of how temperature may change selection and spread of AMR in E. coli. Coupled with some advanced modelling and sequencing. 🧪🦠 #microsky
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Rachel M. Wheatley @rachelmwheatley.bsky.social · 30/03/2026
🔊 Looking for a Research Assistant in Bacterial Evolution to join my lab 🦠 🥼Main duties: Research (AMR + microbiome) + lab assistance. ⏲️ Post duration: 30 months 🗓️ Closing date for applications: 20th April 2026 💰 Salary: ~£35k Details and how to apply: tinyurl.com/2a3v66y7 Please share!
lnkd.in
LinkedIn
This link will take you to a page that’s not on LinkedIn
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Siobhán O'Brien @siderophile.bsky.social · 18/02/2026
MENI is back! Join us in Dublin this August 2026 for our 3rd Meeting for Microbial Evolution in Ireland. We are delighted to have @rachelmwheatley.bsky.social @drrebeccajhall.bsky.social @jpjhall.bsky.social and @tweethinking.bsky.social join us as keynote speakers this year. miniurl.com/MENI
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Stu West @stuwest.bsky.social · 24/02/2026
Why and how to study adaptation in invisible things. A follow up from @asgriffin.bsky.social 's talk at the 2024 @isbe2026.bsky.social meeting www.pnas.org/doi/10.1073/...
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Siobhán O'Brien @siderophile.bsky.social · 18/02/2026
MENI is back! Join us in Dublin this August 2026 for our 3rd Meeting for Microbial Evolution in Ireland. We are delighted to have @rachelmwheatley.bsky.social @drrebeccajhall.bsky.social @jpjhall.bsky.social and @tweethinking.bsky.social join us as keynote speakers this year. miniurl.com/MENI
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Hassan Salem @hassansalem.bsky.social · 16/02/2026
How specific are heritable symbioses? And what can we learn from swapping obligate symbionts across host species? We address this in our latest, led by @inespons.bsky.social & in our collaboration w/ @microbiome.bsky.social 🦠🪲 Out today in @natcomms.nature.com! 1/n www.nature.com/articles/s41...
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Letters of Note @lettersofnote.com · 12/02/2026
Happy birthday to one of my favourite haters, Charles Darwin
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Stu West @stuwest.bsky.social · 03/02/2026
The Nowak-Epstein emails reminded us about the genius summary of that strange paper, which has better stood the test of time 😂 youtube.com/watch?v=oE6I...
youtube.com
Important Harvard Scientists Attack Kin Selection
YouTube video by jonfwilkins
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Siobhán O'Brien @siderophile.bsky.social · 02/02/2026
Some very juicy emails in these files also - especially like this absolute belter from Bob Trivers
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Stu West @stuwest.bsky.social · 02/02/2026
Strange discovery that an email about inclusive fitness was forwarded to Jeffrey Epstein, with the emailer quoting Jerusalem and comparing themself to Einstein. Are you one of the >100 evolutionary biologists now in the Epstein files? www.justice.gov/epstein/file...
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Siobhán O'Brien @siderophile.bsky.social · 19/01/2026
Combined anthropogenic stressors (warming and fungicide) synergistically reduce soil microbial ecosystem functioning (respiration, metabolic capacity, plant performance, fungicide resistance). A tour-de-force by @kelbrick.bsky.social! www.biorxiv.org/content/10.6...
biorxiv.org
Fungicide and warming interact to reduce soil ecosystem functioning
Soil microbial communities are essential to the functioning of their ecosystems, providing vital services such as plant growth promotion and bioremediation. However, intensively managed environments such as agricultural soils are increasingly challenged with multiple harsh environmental stressors from the compounding effects of climate change and conventional agricultural practices. Understanding how soil communities will respond to environmental stress along multiple axes is key for predicting how environmental change will impact terrestrial soil ecosystems. We combine experimental evolution with community phenotyping, 16s rRNA metabarcoding, fungicide resistance assays and plant experiments, to show that fungicide and warming temperatures together drive a synergistic reduction in soil community respiration rates, metabolic capacity and plant growth promotion (Hordeum vulgare), which would have been missed by looking at stressor effects independently. Dual stressors caused widespread loss of metabolic activity, particularly for carbohydrates and carboxylic acids, highlighting impairment of community function. Fungicide-evolved soil isolates had a 16-fold increase in fungicide resistance, but only in the absence of warming, suggesting that the dual stressor treatment constrained fungicide adaptation. Together, our findings suggest that the number of stressors (rather than the nuances of individual stressors) may be key for predicting soil microbial community responses to environmental change across multiple axes. ### Competing Interest Statement The authors have declared no competing interest. BBSRC, BB/T009446/1 IRC New Foundations and Community Foundation Ireland, NF/2022/39250777 NERC, NE/S00713X/1
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Rachel M. Wheatley @rachelmwheatley.bsky.social · 15/01/2026
🚨4-year fully funded PhD in the lab of @magicmicrobe.bsky.social (& collaborating with me!): How does iron availability shape the ability of pathogens to invade the gut microbiome? Apply by Jan 26th Advert: research.reading.ac.uk/foodbiosyste... How to apply: research.reading.ac.uk/foodbiosyste...
research.reading.ac.uk
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Siobhán O'Brien @siderophile.bsky.social · 31/12/2025
Wrapping up 2025 with my favourite Dublin hike, the sea cures all!
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Anna Olina @annaolina.bsky.social · 26/11/2025
@jpjhall.bsky.social starts the #MicroEvo25 strong! Looks like it's gonna be fun🧬🧫🧪
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Association of Applied Biologists @aabiologists.bsky.social · 18/11/2025
A great start to Session 1: Soil organisms, biodiversity & plant interactions 🪱🌱 🦠 Siobhan O'Brien @siderophile.bsky.social 🍏 Louise Robinson Boyer @niab-uk.bsky.social 🐛 William Hearty @universityofhawaii.bsky.social #AAB_RegenAg
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EMPSEB31 @empseb31.bsky.social · 14/11/2025
🏔️ EMPSEB31 is heading to the mountains! This year we’ll meet in Oberwiesenthal, Germany (8–12 June 2026), a quiet mountain town in the Ore Mountains, right on the Czech border. Think forest trails, open skies, and fresh air. Join us for a week of science and fun!🌿 #EMPSEB31 #EvoBio #PhD
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Hadley Wickham @hadley.nz · 06/11/2025
Do you teach #rstats? Do your students complain about how lame and old-fashioned dplyr is? Don't worry: I have the solution for you: github.com/hadley/genzp.... genzplyr is dplyr, but bussin fr fr no cap.
github.com
GitHub - hadley/genzplyr: dplyr but make it bussin fr fr no cap
dplyr but make it bussin fr fr no cap. Contribute to hadley/genzplyr development by creating an account on GitHub.
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Rachel M. Wheatley @rachelmwheatley.bsky.social · 30/10/2025
🔊 Applications for the tenure-track illuminate global challenge fellowships at Queen’s are now open! Comes with 5 years protected research time, a PhD studentship, & 60k start-up. I had one of these before getting my FLF, happy to chat to anyone interested! www.qub.ac.uk/Research/fel...
qub.ac.uk
Our Illuminate Global Challenges Fellowships | Research | Queen's University Belfast
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Greg Albery @gfalbery.bsky.social · 03/10/2025
I'm v excited to be recruiting a PhD student to work on badger behaviour and ecology! Starting date is March 2026; see the ad here, or message me for more details: www.gregalbery.me/s/March-2026...
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Siobhán O'Brien @siderophile.bsky.social · 09/10/2025
This looks great but it's behind a paywall (!), would anyone like to send me a pdf? www.nature.com/articles/s41...
nature.com
Phenazines contribute to microbiome dynamics by targeting topoisomerase IV - Nature Microbiology
Computational analysis and pairwise assays reveal that bacterial topoisomerase IV is a target of microbially produced phenazines, which informs synthetic-community design to treat fungal crop infection.
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Pathogenic Mechanisms Research Group @molecularpathogen.bsky.social · 03/10/2025
Lecturership in Microbiolgy @uniofgalway.bsky.social. Application submission deadline coming soon - October 9th. universityvacancies.com/university-g...
universityvacancies.com
Lecturer in Microbiology, Permanent, 1 FTE, Contract Type B, 011296 | University Vacancies Ireland
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Siobhán O'Brien @siderophile.bsky.social · 25/09/2025
Dublin is looking especially radiant this evening, maybe it’s the tenure? Thanks Trinity! 🎉🎓
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Rachel M. Wheatley @rachelmwheatley.bsky.social · 16/09/2025
Delighted to share that I’ve been awarded a Future Leaders Fellowship to investigate the impact of microbial interactions on antimicrobial resistance evolution 🎉 🧫 really grateful for this investment in my lab and excited to start my fellowship in Jan’26! www.ukri.org/news/ukri-an...
ukri.org
UKRI announces winners of £120 million Future Leaders Fellowships
Research into the causes of lung cancer and Alzheimer’s disease are among 77 projects to be funded by UKRI’s Future Leaders Fellowships.
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Daniel Padfield @padpadpadpad.bsky.social · 16/09/2025
I have an MRC-funded PhD project available (www.exeter.ac.uk/study/fundin...) on how warming will change the problem of AMR. Join a small and friendly group (padpadpadpad.netlify.app/about) in (sometimes) sunny Cornwall. 🧪🦠 #microsky Please share the ad below with anyone who may be interested.
A teal flyer for a PhD opportunity to investigate how warming may change antimicrobial resistance. The project will use experiments on Klebsiella bacteria to answer questions about how temperature affects their response to antibiotics, plasmid transfer, and fitness costs. The research involves microbiology lab work, bioinformatics, and mathematical modeling. The flyer includes contact details for Dr. Daniel Padfield and the logos of the sponsoring institutions.
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Flo Débarre @flodebarre.eurosky.social · 05/09/2025
Here's the paper you may be referring to
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