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Rhys Grinter

@rhyswg.bsky.social
508 followers 551 following 27 posts

Lab head at the University of Melbourne. Studying the structure and biochemistry of microbial membrane proteins and metalloenzymes.

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Rhys Grinter @rhyswg.bsky.social · 18/08/2026
Out now in @natmicrobiol.nature.com: Bacillus subtilis builds protein filaments that act as a pseudomembrane, pulling quinone out of the bilayer and carrying it into the cytosol for reduction by NADH dehydrogenase, well away from the membrane itself. doi.org/10.1038/s415... 1/5
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Matt Doyle @doylemt1.bsky.social · 13/01/2026
💊 We are excited to share our preprint that describes an inhibitor of the widespread and highly conserved Two-Partner Secretion (TPS) system that is critical for Gram-negative pathogens to export a multitude of diverse virulence factors. (1/6) www.biorxiv.org/content/10.6...
biorxiv.org
First inhibitor of a bacterial two-partner secretion system.
Two-partner secretion system transporter proteins (TpsB) are widely conserved across Gram-negative pathogens. TpsB family proteins secrete exoprotein virulence factors that perform a myriad of functions such as adhesion and immune modulation. Despite their incredible importance in bacterial infectious disease, TpsB inhibitors have not yet been discovered. Here, we describe a potent inhibitor of FhaC, a TpsB protein produced by Bordetella spp . FhaC secretes the exoprotein FhaB that is essential for the establishment of whooping cough. We designed a peptide called P1 that we predicted would prevent substrate binding and lock FhaC in a secretion-inactive state. Simulations and biochemical assays supported our hypothesis and identified interactions important for P1 binding to FhaC. Strikingly, we observed that the peptide strongly inhibited FhaB secretion from clinical isolates and broadly reduced correlates of virulence. Together, this work provides a strong case for further development of a novel class of anti-TpsB anti-virulence compounds. ### Competing Interest Statement The authors have declared no competing interest. National Institute of Allergy and Infectious Diseases, R21AI180112
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ARC Tracker @arc-tracker.bsky.social · 12/01/2026
⁉️The ARC has delayed outcomes of ALL grants 1–4 months & increased scheduled outcome windows from 2 weeks to 3 months! This reverses 4 years of progress in providing greater certainty & ability to plan for researchers, their families & unis. Their excuse? Security checks under new ARC legislation👇
Black text on white background. Screenshot of ARC’s Network Message regarding delays to grant announcements because of new security arrangements.
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Dr Michelle L Halls @drmlhalls.bsky.social · 13/01/2026
The latest research from our team is out in Cell @cp-cell.bsky.social! We used #cryo-EM, #imaging, #BRET, and #biosensors targeted to the lysosome to understand how the KICSTOR-GATOR1 complex turns off #mTORC1 in response to low levels of amino acids.
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Vanni Lab at UNIFR, Switzerland @labvanni.bsky.social · 12/01/2026
Happy to finally share the amazing results of our long-term collaboration with Karin Reinisch’s lab on how bridge lipid-transfer proteins (BLTPs) cooperate with partner proteins to orchestrate lipid delivery. A quick thread (1/7) www.biorxiv.org/content/10.6...
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Sven T. Stripp @stripplab.bsky.social · 12/11/2025
Long-read on [NiFe]-hydrogenase Huc in @laborjournal.bsky.social (German language, RP with a proper image 🤗) www.laborjournal.de/rubric/journ...
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Carolien van de Sandt @cvandesandt.bsky.social · 07/11/2025
I'm deeply honoured & grateful to have been awarded the #CSLCentenaryFellowship at the #AAHMS dinner last week Many thanks to my mentors & colleagues for their support Congratulations to my Fellow winner @rhyswg.bsky.social #MedicalResearch #CSLCentenaryFellowships #WomenInSTEMM @mcri.bsky.social
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Tanja Junkers @polymerreaction.bsky.social · 27/10/2025
Translation for last year PhD students: You want to watch the ARC webpage tomorrow to see who will be looking for postdocs in 2026
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Chris H. Hill @chillzaa.bsky.social · 07/10/2025
Enteroviruses cause over a billion infections each year, but the details of how their genomes capture host ribosomes have remained elusive. I'm pleased to share a new preprint from Miguel in our group, providing some new insights into this problem: www.biorxiv.org/content/10.1...
biorxiv.org
Structural and mechanistic insights into translation initiation on the enterovirus Type 1 IRES
Enteroviruses are a widespread and diverse set of pathogens responsible for over ~1 billion human infections annually. Upon cell entry, translation of the virus genome is mediated by an internal ribos...
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Nature @nature.com · 07/10/2025
Nature research paper: A new paradigm for outer membrane protein biogenesis in the Bacteroidota go.nature.com/3KvfHiG
go.nature.com
A new paradigm for outer membrane protein biogenesis in the Bacteroidota - Nature
Structural and biochemical studies of the β-barrel-assembly machinery from Flavobacterium johnsoniae reveal a subunit composition and assembly that are distinct from those of the canonical Escherichia coli complex.
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Fabian Munder @fabianmunder.bsky.social · 22/09/2025
Check out our preprint in which we determine how a class of potent protein antibiotics specifically kill P. aeruginosa without a need to enter the cell. doi.org/10.1101/2025... This is work from my PhD in the lab of @rhyswg.bsky.social and many collaborators who contributed amazing data!
doi.org
A Protein Antibiotic Inhibits the BAM Complex to Kill Without Cell Entry
Many antibiotics are ineffective against Gram-negative pathogens such as Pseudomonas aeruginosa because they cannot penetrate the bacterial outer membrane. Here, we show that protein antibiotics calle...
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Brett Collins @brettcollins.bsky.social · 20/09/2025
This is an amazing paper led by the Grinter lab on bacterial protein antibiotics called pyocins and the mechanism by which they inhibit the BAM outer membrane complex. @rhyswg.bsky.social, @knottrna.bsky.social, @debnathghosal.bsky.social, @doylemt1.bsky.social, @fabianmunder.bsky.social
biorxiv.org
A Protein Antibiotic Inhibits the BAM Complex to Kill Without Cell Entry
Many antibiotics are ineffective against Gram-negative pathogens such as Pseudomonas aeruginosa because they cannot penetrate the bacterial outer membrane. Here, we show that protein antibiotics calle...
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Rhys Grinter @rhyswg.bsky.social · 20/09/2025
The outer membrane of Gram-negative bacteria blocks many antibiotics. Our latest work reveals that L-type pyocins bypass this barrier by inactivating the BAM complex, killing Pseudomonas aeruginosa without entering the cell, providing a new blueprint for beating antibiotic resistance.
biorxiv.org
A Protein Antibiotic Inhibits the BAM Complex to Kill Without Cell Entry
Many antibiotics are ineffective against Gram-negative pathogens such as Pseudomonas aeruginosa because they cannot penetrate the bacterial outer membrane. Here, we show that protein antibiotics calle...
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Cyntia Taveneau @cyntiat.bsky.social · 02/09/2025
Excited to share our new review on AI-driven protein design - from its origins to today’s breakthroughs, methods, potential, and challenges ahead ! www.cell.com/structure/fu...
cell.com
Code to complex: AI-driven de novo binder design
In this review, Fox et al. discuss how artificial intelligence has transformed our ability to design new-to-nature proteins that bind target proteins with high affinity and specificity. The authors de...
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 31/08/2025
New engineered protein shows promise as antidote for carbon monoxide poisoning www.medschool.umaryl...
The natural protein RcoM
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Boston Protein Design and Modeling Club @bpdmc.org · 13/08/2025
Fun fact: #bindcraft evolved from a binder design tutorial originally developed for BPDMC! Come see @martinpacesa.bsky.social tonight at 7pm EDT in Room 181, Building 68, @mit.edu "BindCraft: one-shot design of functional protein binders" bpdmc.org
bpdmc.org
schedule
introduction and membership Boston Protein Design and Modeling Club (BPDMC) is a community of computational protein engineers and modelers from both academia and industry. While we are based in Boston...
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Sven T. Stripp @stripplab.bsky.social · 08/08/2025
Next-level hydrogenase fuel cell just dropped, congrats @rhyswg.bsky.social and @greening.bsky.social et al.!
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Chris Greening @greening.bsky.social · 08/08/2025
1/3 Electricity from air! In the top journal Nano Energy today, we report the first fuel cell that makes power from air alone. We achieved this by using the enzyme Huc to oxidize ambient hydrogen. This results in a continuous low-level power from air and higher outputs with industrial waste gases.
sciencedirect.com
Nanoengineered bioanode with oxygen-insensitive hydrogenase for sustainable energy harvesting from atmospheric hydrogen and waste gases
Enzymatic biofuel cells (EBFCs) utilizing hydrogenases to oxidize hydrogen offer a sustainable approach to energy conservation. However, the oxygen se…
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PEIPolitical 🇨🇦 @peipolitical.bsky.social · 02/08/2025
PM Mark Carney 🇨🇦 A new airlift of Canadian aid landed in Gaza today, with thanks to His Majesty King Abdullah II & our Jordanian partners. Canada is dedicating more than $340 million in aid to address the humanitarian crisis in Gaza & we will ensure it moves forward at the necessary scale. #cdnpoli
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Debnath Ghosal @debnathghosal.bsky.social · 02/08/2025
In this system, bacteria detect phage infection through a sensor protein (YjbH) and respond by severing the infected part of the cell via aberrant division. The rest of the cell survives and continues growing happily, essentially, bacterial autotomy!
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Debnath Ghosal @debnathghosal.bsky.social · 02/08/2025
📣 New paper alert! Just out in Cell Reports! pubmed.ncbi.nlm.nih.gov/40644298/ Thrilled to share that we have discovered a brand-new anti-phage defense system! Bacteria have evolved various defense strategies (CRISPR etc) to counter phage attacks. We found a new one - fascinating and dramatic ⚔️🦠❄️🔬
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Alexandre Bonvin @amjjbonvin.bsky.social · 29/07/2025
A small reminder to all structural biologists around working on biomolecular complexes: please consider sharing your complexes as targets for CAPRI - AI has not solved all structure prediction problems and there are still challenges! See www.capri-docking.org/contribute/
capri-docking.org
CAPRI Docking
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Cameron Thrash @jcamthrash.bsky.social · 28/07/2025
ATP synthesis driven by atmospheric hydrogen concentrations www.pnas.org/doi/abs/10.1... #jcampubs
pnas.org
ATP synthesis driven by atmospheric hydrogen concentrations | PNAS
All cells require a continuous supply of the universal energy currency, adenosine triphosphate (ATP), to drive countless cellular reactions. The un...
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Martin Pacesa @martinpacesa.bsky.social · 26/07/2025
Excellent nanomolar peptide design success rates with BindCraft!
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Martin Pacesa @martinpacesa.bsky.social · 25/07/2025
I am super excited to announce that I will be starting my lab at the Department of Pharmacology of the University of Zurich in Switzerland next year!
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Rhys Grinter @rhyswg.bsky.social · 25/07/2025
Did you know that some bacteria can generate ATP, the energy currency of life, literally out of thin air? 🌬⚡️ In PNAS today, we show how bacteria can do this using just three enzymes. Honoured to contribute to this study with Christoph von Ballmoos, Chris Greening and Gregory Cook lnkd.in/gxm8SXxF
lnkd.in
LinkedIn
This link will take you to a page that’s not on LinkedIn
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Chris Greening @greening.bsky.social · 25/07/2025
Our article showing energy production from air alone is in PNAS today. This paper provides an ultimate biochemical proof that microbes can survive simply by 'making' energy from air (making two ATP per molecule atmospheric H2 consumed) and has biotech applications. www.pnas.org/doi/10.1073/...
pnas.org
ATP synthesis driven by atmospheric hydrogen concentrations | PNAS
All cells require a continuous supply of the universal energy currency, adenosine triphosphate (ATP), to drive countless cellular reactions. The un...
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Roland Dunbrack 🏳️‍🌈 @rolanddunbrack.bsky.social · 22/07/2025
DeepMind will fund CASP for a year. Very nice to hear. (not paying Stat $30 a month, but you can read the first bit). www.statnews.com/2025/07/21/c...
statnews.com
AlphaFold developer Google DeepMind to fund CASP as NIH funding falls short
Protein structure prediction contest CASP gets temporary funding from Google DeepMind as NIH grant runs out.
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Maciek Wiatrak @macwiatrak.bsky.social · 21/07/2025
💥 Excited to introduce Bacformer 🦠 - the first foundation model for bacterial genomics. Bacformer represents genomes as sequences of ordered proteins, learning the “grammar” of how genes are arranged, interact and evolve. Preprint 📝: biorxiv.org/content/10.1... 🧵 1/n
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Chris H. Hill @chillzaa.bsky.social · 19/07/2025
New preprint alert! 🚨👇 I'm delighted to share the latest research from @jemmabetts.bsky.social in our group: ‘A new protein-dependent riboswitch activates ribosomal frameshifting’. Huge congratulations to Jemma for the first manuscript of her PhD! ✨ www.biorxiv.org/content/10.1...
biorxiv.org
A new protein-dependent riboswitch activates ribosomal frameshifting
Programmed -1 ribosomal frameshifting (PRF) is a ubiquitous translational control mechanism in RNA viruses, allowing them to change the relative abundance of proteins encoded in different reading fram...
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Christopher McDevitt @camcdevitt.bsky.social · 20/07/2025
The costs of #antimicrobial resistance 🦠 continue to rise 📈. The Center for Global Development reports that by 2050 #AMR could shrink the global economy by US$1.7T. Improving treatments and funding development of new antimicrobials 💊 could save millions of lives and billions in healthcare costs.
cgdev.org
Forecasting the Fallout from AMR: Economic Impacts of Antimicrobial Resistance in Humans
Antimicrobial resistance (AMR) is a growing global health crisis that threatens to undo decades of progress in medicine. This tool allows you to explore the potential impact of different interventions...
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We're just normal men @wejustinnocentmen.bsky.social · 17/07/2025
We’re just normal men
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Martin Pacesa @martinpacesa.bsky.social · 12/07/2025
We (meaning Aswin and Stan www.biorxiv.org/content/10.1...) found this jumbophage protein homologue of PhiKZ_124 that activates Avast5 and we solved a 2.1A cryoEM structure of but we have no idea what it does. Let me know it you got some idea. www.rcsb.org/structure/9RP3
biorxiv.org
Molecular basis for anti-jumbo phage immunity by AVAST Type 5
Jumbo phages protect their genomes from DNA-sensing bacterial defense systems by enclosing them within vesicles and nucleus-like compartments. Very little is known about defense systems specialized to...
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Australian Academy of Science @science.org.au · 11/07/2025
Are you a top US-based scientist wanting to relocate to Australia? We are now calling for formal applications from both Australian and non-Australian citizens based in the US whose work is internationally recognised as exceptional. 📅 Applications close: Aug 29, 2025 🔗 science.org.au/gtap/?utm_so...
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Kelly Nguyen @kellythd-nguyen.bsky.social · 10/07/2025
Proud to share our work where we resolved a longstanding question regarding the existence of a human telomerase dimer and provided insights into its function. Led by 3 amazing lab members in collaboration with @yiliangding.bsky.social and @rdaslab.bsky.social. www.science.org/doi/10.1126/...
science.org
Cryo-EM structure of human telomerase dimer reveals H/ACA RNP-mediated dimerization
Telomerase ribonucleoprotein (RNP) synthesizes telomeric repeats at chromosome ends using a telomerase reverse transcriptase (TERT) and a telomerase RNA (hTR in humans). Previous structural work showe...
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Razvan Borza @rborza.bsky.social · 09/07/2025
🚀 My first Cryo-EM structures are OUT on the PDB! 🎉Super excited about this milestone as PhD, it’s been a journey, and I’m grateful to finally have these as my first Cryo-EM structures! 🙌 🔁Thank you for sharing!❤️ Read @daaninthelab.bsky.social et. al.: www.science.org/doi/10.1126/... ⬇️ 2nd video
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Daniel Fox @danielrfox.bsky.social · 10/07/2025
Proud to share some of the work from my PhD is now out in Nature Communications! Very grateful to all coauthors who helped make this happen, especially my supervisors @rhyswg.bsky.social and @knottrna.bsky.social for their support. 🩸 🦠 🔬
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Rhys Grinter @rhyswg.bsky.social · 10/07/2025
Excited to share our latest work using AI-designed proteins to block heme-piracy by E. coli. Published in @natcomms.nature.com. A team effort between my lab and the ‪‪@knottrna.bsky.social‬ ‬lab, with experimental work led by the talented @danielrfox.bsky.social www.nature.com/articles/s41...
nature.com
Inhibiting heme piracy by pathogenic Escherichia coli using de novo-designed proteins - Nature Communications
Many pathogens encode transporters that extract heme directly from host proteins. In this study, the authors demonstrate the utility of de novo-designed proteins in understanding the mechanism behind ...
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Daniel Hurdiss @danielhurdiss.bsky.social · 18/06/2025
Amazingly, this gave us a high-confidence transmembrane channel for both mouse and human NS3, with oleic acids forming a bilayer-like pattern. Our group now call this the “fatty acid hack.” The #alphafold predictions with and without fatty acids shown below 👇
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Institute for Protein Innovation @ipiproteins.bsky.social · 01/07/2025
A @csisingapore.bsky.social team showed D-I-Tasser can outperform AlphaFold2/3, elevating high-accuracy protein structure & function predictions. We wonder if this moves us closer to resolving protein–protein complex structure prediction? @natbiotech.nature.com www.nature.com/articles/s41...
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Matt Doyle @doylemt1.bsky.social · 06/07/2025
Check out these amazing lipid-monolayer-trapping oligomeric OMPs published by @lalouxlab.bsky.social and Lovering Labs. The BAM complex in these bugs must be wild! www.nature.com/articles/s41...
nature.com
A porin-like protein used by bacterial predators defines a wider lipid-trapping superfamily - Nature Communications
This study reveals that an outer membrane protein from the predator Bdellovibrio bacteriovorus forms a pentameric assembly that traps a lipid monolayer within. This allows the discovery of two superfa...
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Science Magazine @science.org · 02/07/2025
Exclusive: An international scientific competition widely credited with spurring the development of artificial intelligence for biology appears to be on its deathbed. scim.ag/44ukS90
scim.ag
Exclusive: Famed protein structure competition nears end as NIH grant money runs out
Agency silent on funding renewal for contest that inspired creation of AIs that predicted how proteins would fold
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Roland Dunbrack 🏳️‍🌈 @rolanddunbrack.bsky.social · 02/07/2025
CASP is the main reason the protein structure prediction technology and research field advanced over the last 30 years. And the main reason AI based methods have been accepted and widely applied in biology. So shortsighted of NIH to postpone or even halt funding. John Moult is a scientific hero.
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Kate Michie @kmichie.bsky.social · 02/07/2025
ASBC and Biocommons are building opportunities for researchers to discuss and explore protein design tech. First up is @rhyswg.bsky.social. Excited for this!
biocommons.org.au
WEBINAR SERIES: Leveraging deep learning to design custom protein-binding proteins — Australian BioCommons
Be inspired by case studies that show you how deep learning methods are speeding up the process of designing proteins with desirable biophysical properties. More information Register
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Martin Pacesa @martinpacesa.bsky.social · 30/06/2025
We have written up a tutorial on how to run BindCraft, how to prepare your input PDB, how to select hotspots, and various other tips and tricks to get the most out of binder design! github.com/martinpacesa...
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ARC Tracker @arc-tracker.bsky.social · 30/06/2025
#DiscoveryProjects #DP26 Assessor reports should now be available in RMS for Discovery Projects 2026.
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Sven T. Stripp @stripplab.bsky.social · 26/06/2025
TL;DR 👉🏻 We are reporting ~100 aa "micro hydrogenases" that produce H2 from water at a reduction potential close to the H+/H2 standard potential. 👉🏻 Additionally, these enzymes are less O2 sensitive than [FeFe]-hydrogenase, which adds to their potential as biocatalysts! ⛓️ doi.org/10.1002/advs...
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Sven T. Stripp @stripplab.bsky.social · 26/06/2025
The article was covered in the news recently 🙏🏻 English phys.org/news/2025-06... German chemie.de/news/1186506...
phys.org
Biohybrid molecule uses light-driven electrons to efficiently produce hydrogen
Natural hydrogen-producing enzymes are large and extremely sensitive to oxygen. This makes it difficult to use them for the applied production of green hydrogen. Researchers from the Photobiotechnolog...
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Structural Biology @actacrystd.iucr.org · 24/06/2025
Bogdan Toader et al.: Efficient high-resolution refinement in cryo-EM with stochastic gradient descent #CryoEM #HomogeneousRefinement #StochasticGradientDescent @unewhaven...#IUCr journals.iucr.org/paper?S2059798325…
journals.iucr.org
Efficient high-resolution refinement in cryo-EM with stochastic gradient descent
In the context of cryo-EM reconstruction, we provide a theoretical analysis showing that the condition number of the optimization problem is particularly large at high resolution, leading to slow convergence of gradient-based methods such as stochastic gradient descent. We then propose a method to overcome this issue by computing a preconditioner using Hutchinson's estimator, which results in improved convergence speed, as evidenced by numerical experiments.
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