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Rachel Moran

@rachelmoran.bsky.social
1.7K followers 1.5K following 35 posts

Assistant Professor in Ecology & Evolution at UChicago. Evolutionary genomics and behavior in fishes. (she/her) rachelmoranlab.com

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Reposted by Rachel Moran
Dr George RA Hancock 🦋🦎 @grahancock.bsky.social · 30/09/2026
Woohoo, it's now live! We show, using four lines of evidence, that butterfly wings can create illusory motion effects! @esbriolat.bsky.social, @scienceanna.bsky.social, @lauraakelley.bsky.social, @jtroscianko.bsky.social www.nature.com/articles/s41...
nature.com
Butterfly wing patterns in flight create powerful illusory motion cues - Nature
Butterfly wing patterns and flight dynamics work in tandem to create powerful visual illusions that confuse predators, potentially representing one of the most successful visual defence strategies in ...
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Reposted by Rachel Moran
Sara Lipshutz (she/her) @jacanamama.bsky.social · 24/09/2026
Super excited to share this study by @gamaevo.bsky.social in collaboration with Steve Nowicki and Susan Peters!! Response to geographic song variation predicts differential gene expression in the blood of a songbird: iScience www.cell.com/iscience/ful...
cell.com
Response to geographic song variation predicts differential gene expression in the blood of a songbird
Behavioral neuroscience; Ecology; Transcriptomics
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Reposted by Rachel Moran
Judith Mank @judithmank.bsky.social · 23/09/2026
So very, very happy to see this out @plosbiology.org : Ancient inversion polymorphisms associate with sexually selected traits across natural guppy populations. Beautiful work by two very clever and talented coauthors, Yuying Lin and @vdbijl.bsky.social . journals.plos.org/plosbiology/... 1/
journals.plos.org
Ancient inversion polymorphisms associate with sexually selected traits across natural guppy populations
Genomic inversions spanning many genes can persist for millions of years. This study of Trinidadian guppy populations reveals how both ecological conditions and mate choice help maintain this hidden l...
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Evolution Letters @evolletters.bsky.social · 31/08/2026
Recombination helps evolution—but it can also cause mutations. New theory shows that even small increases in mutation near crossovers can oppose the evolution of higher recombination rates. By @sarperotto.bsky.social and Bret Payseur academic.oup.com/evlett/advan...
academic.oup.com
Elevated mutation near crossovers inhibits the evolution of recombination
Abstract. Recombination diversifies offspring genomes and helps ensure chromosome segregation during meiosis. Mutation rates are elevated near crossovers d
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Reposted by Rachel Moran
Yann Dussert @yanndussert.bsky.social · 11/09/2026
The LBGB team at @genoscopeumr.bsky.social, led by @jm-aury.bsky.social, recently released Hobrac, a tool to investigate synteny between genomes! Can be used for assembly validation or comparative genomics. doi.org/10.64898/202... github.com/Genoscope-LB... See below for what Hobrac can do:
Figure showing some outputs of the Hobrac tool (e.g. ribbon plots & oxford plots), here illutrating synteny between bivalve genomes.
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Graham Coop @gcbias.bsky.social · 10/09/2026
I’m looking to hire an NIH funded postdoc to join our lab here at Davis (please RT). Ongoing areas of interest include: 1) polygenic signals of selection from time series, ARGs, GWAS, etc 2) The interpretation of GWAS, polygenic scores, & sources of confounding
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MwahahahahahadScientist @mads100tist.bsky.social · 10/09/2026
HEAR YE HEAR YE 🧪
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Rachel Moran @rachelmoran.bsky.social · 09/09/2026
Our lab's first journal cover! Art by @taylorblack.bsky.social and project led by @brynnjohnson13.bsky.social
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MEPGT @mepgt.bsky.social · 30/08/2026
Very important paper by @phylogenetrips.bsky.social "Genes and sites under adaptation at the phylogenetic scale also exhibit adaptation at the population-genetic scale" | PNAS www.pnas.org/doi/10.1073/...
pnas.org
Genes and sites under adaptation at the phylogenetic scale also exhibit adaptation at the population-genetic scale | PNAS
Adaptation in protein-coding sequences can be detected from multiple sequence alignments across species or alternatively by leveraging polymorphism...
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Tony Gamble @tonygamble.eurosky.social · 27/08/2026
New collaborative paper from the lab on gecko sex chromosome and genome evolution! 🧪🦎 www.science.org/doi/10.1126/...
science.org
Genomic predisposition is associated with the direction of sex chromosome evolution
Sex chromosome evolution is among the most dynamic genomic innovations in vertebrates, yet why some lineages evolve XY while others evolve ZW remains unclear. Using chromosome-level genomes from 19 ge...
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Reposted by Rachel Moran
Darrin T. Schultz @dts.bsky.social · 19/08/2026
Our new paper in Science Advances asks how animals' genomes have changed since their origin from a common ancestor over 600 million years ago, and what patterns in their DNA have arisen in the churn of speciation and extinction. www.science.org/doi/10.1126/...
Five-panel diagram explaining fusion-with-mixing in chromosome evolution. Red and blue represent two different ancestral chromosomes throughout.

A, Fusion-with-mixing: a red chromosome and a blue chromosome fuse into one half-red, half-blue bar. Down the page, successive rows show inversions, drawn as X-shaped crossings between rows, progressively interleaving the two colors until the bottom bar is finely striped. A widening gray wedge labeled Entropy runs alongside an arrow marked Time plus evolution, pointing down.

B, Independent regulation: two separate chromosomes, one red and one blue. In each, a regulatory element, drawn as an oval, acts by an arrow on a gene within its own chromosome only.

C, FWM and novel regulation: on a fused, mixed chromosome, a red gene and a blue gene now sit next to each other across an inversion breakpoint. Red and blue arrows show regulatory elements reaching across it to act on the other chromosome's gene.

D, Regulatory entanglement: an extensively mixed chromosome, finely striped. Below it, a row of alternating red and blue genes is linked by a dense web of crossing curved arrows, so many overlapping regulatory connections that unmixing the chromosome would break them.

E, Emergence of entangled loci: a five-species phylogeny. A red and a blue chromosome fuse at an ancestral node, and helical icons on later branches mark continued mixing. Colored boxes mark four new red-blue regulatory interactions arising after inversions. Species A keeps its two chromosomes separate. In species B through E, the two earliest interactions, cyan boxes 1 and 2, are present in every descendant lineage, while later ones, yellow 3 and magenta 4, appear in fewer.
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Anonymous Potato @anonymouspotato.bsky.social · 05/08/2026
EcoEvoJobs 2026-27 just opened for business and we've already got 79 faculty / permanent jobs listed. Please repost! ecoevojobs.net
ecoevojobs.net
ecoevojobs.net 2026-27
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Reposted by Rachel Moran
Chris Fiscus @fiscuscj.bsky.social · 06/08/2026
New paper out in PNAS! 🍇🧬 Vitis phylogenomics is a tangled vine. Highlights: • ~14% of the average grape genome comes from introgression • Two classic “hybrid species” are better described as hybrid swarms • Repeated adaptation is fueled by introgression and standing genetic variation
pnas.org
The dynamics of introgression and parallel adaptation across North American Vitis species | PNAS
Hybridization between species can contribute to parallel adaptive events. However, the prevalence of introgression is rarely measured across multip...
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Tom Near @tjnear.bsky.social · 29/07/2026
🧵1/6 New paper from #NearLab dropped! Wood et al. (2026) tackle a long-standing mystery: how did freshwater perches, walleyes, and darters (Percidae) end up on BOTH sides of the Atlantic? Spoiler: they may have swum there. 🐟🌊 #Ichthyology #Evolution #Systematics
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Rachel Moran @rachelmoran.bsky.social · 03/08/2026
I’m excited to be guest editing a JoVE Topical Collection on behavioral genomics across fish diversity! 🐟🧬 We welcome articles linking genes, genomes, neural systems, and behavior in fishes. Please get in touch with any questions and submit abstracts here by Oct. 3: www.jove.com/methods-coll...
jove.com
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Julia Kreiner @jmkreiner.bsky.social · 31/07/2026
uchicago.wd5.myworkdayjobs.com/External/job... The Kreiner and Carley Lab groups are hiring a shared Research Analyst to help lead wet lab protocol development and management. We're a fun group and would love to hear from you :) Get in touch with questions!
uchicago.wd5.myworkdayjobs.com
Research, Analyst
Department BSD E&E Carley Lab About the Department The Kreiner Lab (kreinerlab.com) and Carley Lab (carleylab.uchicago.edu) in the Department of Ecology & Evolution at The University of Chicag...
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Reposted by Rachel Moran
Todd Oakley @ostratodd.bsky.social · 17/06/2026
🧵 New paper! We’re excited to release OPTICS: software that immediately predicts color sensitivity from any opsin protein sequence. In other words: give OPTICS any opsin sequence, and it predicts the wavelength of light the pigment is most sensitive to 🌈👁️ academic.oup.com/mbe/advance-...
academic.oup.com
Accessible and Robust Machine Learning Approaches to Improve the Opsin Genotype-Phenotype Map
Abstract. Predicting phenotypes from genetic variation is a central challenge in biology. Here, machine learning (ML) offers great promise, but its use is
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Reposted by Rachel Moran
NPR @npr.org · 16/06/2026
One of the world's leading brain research centers is shifting away from fruit flies and toward a tiny, transparent fish. The goal: to understand how brains control the behavior of an animal or human. n.pr/4vV8dYM
n.pr
Is a transparent fish the future of brain science? This center is betting on it
One of the world's leading brain research centers is shifting away from fruit flies and toward a tiny, transparent fish. The goal: to understand how brains control the behavior of an animal or human.
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Jun Ishigohoka @junishigohoka.bsky.social · 16/06/2026
Paper alert!🧬🐦💻 Divergent selection is the textbook explanation for narrow inversion clines. Our blackcap inversion cline doesn't fit: it is wide, and the inversion is always the rarer arrangement. We show that negative frequency-dependent selection shifting between populations underlies this!
onlinelibrary.wiley.com
Shifting Balancing Selection Underlies an Inversion Cline in Eurasian Blackcap
We investigated what factor contributes to a cline of a chromosomal inversion of the Eurasian blackcap, which differs from typical inversion clines maintained by divergent selection. Using a simulati...
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Reposted by Rachel Moran
Jeffrey Ross-Ibarra @jrossibarra.bsky.social · 15/06/2026
People. @ksamuk.bsky.social and others have made this argument before. There’s good software to do this right. Here’s the argument again: Invariant sites matter! They’re not in your standard vcf and many programs pretend they are anyway. academic.oup.com/gbe/article/...
academic.oup.com
A Recipe for a Good π. How to Properly Estimate Population Genetics Summary Statistics and Why we Should Systematically Report Them
Abstract. Many long-standing questions in population genomics can now be addressed through comparative analyses and by leveraging the vast amount of genomi
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Hanna Kokko @kokkonut.bsky.social · 11/06/2026
Polymorphisms are fun to study, here is a butterfly one. Negative freq.dependence works to maintain things but where does it come from? Temporal variation works but not always! @koraklein.bsky.social and @chriswheat.bsky.social looked into this in detail. royalsocietypublishing.org/rstb/article...
royalsocietypublishing.org
Emergence time difference can create negative frequency dependence and maintain a colour polymorphism in Colias butterflies
Abstract. Many species of Colias butterflies show a female-limited colour polymorphism where the dominant Alba allele leads to white wings, faster developm
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Reposted by Rachel Moran
Tessa Montague @tessamontague.bsky.social · 19/04/2026
Excited to share a new review by @kocherlab.bsky.social and me: Nature-inspired neuroscience We discuss diverse sensory systems and behaviors across the animal kingdom and argue for their integration into neuroscience. New tools in diverse systems are making this possible ✨ tinyurl.com/y5y9du27
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Maxwell Shafer @maxshafer.bsky.social · 02/06/2026
Have you ever wondered if fish yawn? (and if they do, what that tells us about yawning?) The first preprint from the lab and a serendipitous observation ⬇️ www.biorxiv.org/content/10.6...
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Reposted by Rachel Moran
Molly Schumer @mollyschumer.bsky.social · 12/05/2026
Excited to share this new pre-print from the fantastic @kelsiehunnicutt.bsky.social! Kelsie put together a thoughtful and thorough review on hybridization in animal evolution: ecoevorxiv.org/repository/v.... She tracks notable shifts in perspectives on the study of hybridization through time.
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Society for the Study of Evolution @sse-evolution.bsky.social · 04/05/2026
Proposals are due soon for the Graduate Research Excellence Grants! This year the R. C. Lewontin Early Award and Rosemary Grant Advanced Award are both due on May 18. Be sure to review the application instructions and apply soon! www.evolutionsociety.org/content/soci...
S. Gangothri in the field. Text: Society for the Study of Evolution Graduate Research Excellence Grants, Apply by May 18, 2026.
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Angel G. Rivera-Colón @arcolon14.bsky.social · 29/04/2026
The barnacles are on the loose! Check out my preprint with @stsmall.bsky.social, @johnwares.bsky.social, Erin Jezuit, and Andy Kern: The genome of the Pacific acorn barnacle provides insights into the evolution of extremely large populations doi.org/10.64898/202... 1/n
doi.org
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Rachel Moran @rachelmoran.bsky.social · 15/04/2026
New paper led by @taylorblack.bsky.social shows AVT modulates aggression in darter lineages with nest site territoriality and paternal care but elicits no behavioral response in a species that secondarily lost territoriality and care www.sciencedirect.com/science/arti...
sciencedirect.com
Lineage-specific decoupling of arginine vasotocin-evoked aggression in male darters (Percidae: Etheostomatinae)
The repeated evolution of parental care is often accompanied by shifts in the neural circuits and hormonal pathways that regulate motivation and aggre…
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John Novembre @jnovembre.bsky.social · 14/04/2026
Spread the word! UChicago BSD is currently searching for an instructional professor (open rank) to help develop and support graduate training in quantitative biology at UChicago. This is an Instructional Professor position (open rank). apply.interfolio.com/183517.
apply.interfolio.com
Apply - Interfolio {{$ctrl.$state.data.pageTitle}} - Apply - Interfolio
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Society for the Study of Evolution @sse-evolution.bsky.social · 16/03/2026
Proposals are due May 18 for this year’s Graduate Research Excellence Grants! Up to $2500 for 1st and 2nd year grad students and up to $3500 for 3rd years and above. Learn more and apply now! www.evolutionsociety.org/content/soci...
Text: Society for the Study of Evolution Graduate Research Excellence Grants, Apply by May 18, 2026.
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Jenn Coughlan @jenncoughlan.bsky.social · 10/03/2026
I am SO THRILLED to share our first fully-lab lab paper!!!!!! Led by @hybridzones.bsky.social & @hagarsoliman.bsky.social, w/ a major assist from @pfschwarz.bsky.social!!!!!!!!!!!!! Read more below, if you're curious (you should be- it's AWESOME!!!!!!!) link: www.sciencedirect.com/science/arti...
sciencedirect.com
Introgression and parental conflict shape repeated occurrences of postzygotic isolation in Mimulus
Postzygotic reproductive isolation is often thought to accumulate as a byproduct of neutral divergence. Yet it frequently evolves rapidly, in line wit…
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Rachel Moran @rachelmoran.bsky.social · 10/03/2026
I’m excited to be giving an Armour seminar at the Field Museum tomorrow for Woman’s History Month! www.fieldmuseum.org/our-events/a...
fieldmuseum.org
A. Watson Armour III Research Seminar Series - Field Museum
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💥Seriously🚀Scientific💥 @seriouslysci.bsky.social · 08/03/2026
Remembering Barbara McClintock on International Women's Day! She discovered that genes aren't static, they can actually "jump" around on a chromosome. Her discovery of transposons ("jumping genes") fundamentally changed how we understand evolution and the complexity of DNA! 🧬🌽 #WomenInScience
A detailed digital composite image based on the 1947 historical photograph of geneticist Barbara McClintock. McClintock, with her characteristic short hair and round glasses, is seated at a microscope, using tweezers in a Petri dish. While based on the original photo distributed for her AAUW award, this image presents a significantly expanded and fictionalized laboratory environment. The simple wooden workbench is now densely populated with a vast, colorized collection of complex glassware, numerous amber-colored reagent bottles, intricate distillation columns, and botanical specimens relevant to maize cytogenetics, creating a rich, illustrative narrative of her "jumping gene" research context that was not present in the original photo. The expanded background shows complex vintage laboratory cabinetry. This image explicitly states it is a composite: a digital recreation where Seriously Scientific has taken the historical figure and placed them into an augmented, complex fictionalized environment. Based on original source from Smithsonian Institution Archives. Digital composite by Seriously Scientific.
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Gina Baucom @gbaucom.bsky.social · 02/03/2026
Researchers in the US might be having feelings about writing grants atm-I know I am! We still need to write them. In this Evolution Exchange, I again chat with Sam Scheiner, who summarizes how to write a competitive proposal. His advice is gold, and helpful regardless of funder. Pls RT!
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Evolution Meetings @evolmtg.bsky.social · 16/02/2026
Registration is now open! Early-bird closes April 15. www.evolutionmeetings.org/registration...
evolutionmeetings.org
Evolution 2025 Registration
Evolution 2025 - the joint conference of the SSE, ASN, and SSB
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Matthew Hahn @3rdreviewer.bsky.social · 07/01/2026
While our updated paper is fast approaching book-length, the results remain the same: our method (reconcILS) is still highly accurate. So if you want to reconcile gene trees and species trees--and you might have any ILS at all--this is the best method out there! www.biorxiv.org/content/10.1...
biorxiv.org
reconcILS: A gene tree-species tree reconciliation algorithm that allows for incomplete lineage sorting
Reconciliation algorithms infer the evolutionary history of individual gene trees given a species tree. Many reconciliation algorithms consider only duplication and loss events (and sometimes horizont...
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Joe Hanly @hanliconius.bsky.social · 15/12/2025
It's been a good few weeks for cool bird genomcis - incl this, on warblers sharing colour genes through hybridisation (with evidence of between-genus introgression journals.plos.org/plosbiology/...
journals.plos.org
A colorful legacy of hybridization in wood-warblers includes frequent sharing of carotenoid genes among species and genera
Introgression between species can shape evolutionary trajectories in important ways. This study of the entire family of the colorful wood-warblers (Parulidae) uses whole-genome sequencing to reveal fr...
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Alan Le Moan @alan-ecotype.bsky.social · 06/01/2026
New results on Littorina fabalis ecotypes! 🐌 Inversions aren't just enabling parallel adaptation to wave exposure in France & Sweden, they're also hotspots for site-specific differences, including a striking color QTL associated with one inversion but only in France. www.biorxiv.org/content/10.6...
biorxiv.org
Inversions support both parallel and location-specific adaptations in snail ecotypes
Replicated hybrid zones between ecotypes established over within shore environmental gradients provide an opportunity to study the genomic architecture of barriers to gene flow. The marine snail Litto...
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bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 02/01/2026
Non-canonical sex chromosome evolution revealed by extreme heterogeneity in homomorphic Y chromosome differentiation in the common frog www.biorxiv.org/content/10.64898/20…
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Filippo Nicolini 🧬 @filonico.bsky.social · 31/12/2025
1/2🧵What a way to end 2025! NEW PAPER OUT with ppl from Uni of Bologna & @szndohrn.bsky.social Did you know that some bivalves🦪 transmit mitochondria through both the maternal and paternal lines? We looked at molecular signatures of this through comp #genomics & #RNAseq 🖥️🧬🦑 doi.org/10.1186/s129...
doi.org
New insights into mitochondrial segregation from the Doubly Uniparental Inheritance system in bivalves - BMC Biology
Background While nuclear genome segregation is well characterized, mechanisms underlying mitochondrial partitioning remain partially obscure, even though its failure can cause developmental arrest or ...
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Genome Biology and Evolution @genomebiolevol.bsky.social · 27/12/2025
Ho et al. present genome assemblies for the parental species of the unisexual hybrid New Mexico Whiptail Lizard, using it to analyze WGS data from the hybrids, suggesting that genomes of unisexual lineages diverge more quickly than anticipated. 🔗 doi.org/10.1093/gbe/evaf228 #genome #evolution
GBE | Ancestral Chromosome-Level Assemblies Reveal Posthybridization Genome Evolution in the New Mexico Whiptail Lizard (Aspidoscelis neomexicanus)
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Marty Kardos @martykardos.bsky.social · 14/12/2025
www.science.org/doi/abs/10.1...
science.org
Multispecies pangenomes reveal a pervasive influence of population size on structural variation
Structural variants (SVs) are widespread in vertebrate genomes, yet their evolutionary dynamics remain poorly understood. Using 45 long-read de novo genome assemblies and pangenome tools, we analyze S...
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Genome Biology and Evolution @genomebiolevol.bsky.social · 16/12/2025
Chul et al. leveraged Bird 10K genomes to explore convergent amino acid variants across phylogenetically matched control sets of bird species; they find convergent genes in six vocal learners significantly enriched in learning-related functions. 🔗 doi.org/10.1093/gbe/evaf112 #genome #evolution
GBE | Insights into Convergent Evolution From Studying Amino Acid Patterns in Independent Lineages of Birds

Vocal learning, the ability to imitate and produce sounds from other individuals, is a convergent trait found in three major avian lineages: songbirds, parrots, and hummingbirds. This study leveraged Bird 10K genomes to explore convergent amino acid variants (ConSAVs) across phylogenetically matched control sets, revealing that while ConSAV counts correlate strongly with ancestral branches as the product of original branch lengths (P.O.B.), the vocal learning birds do not always exhibit the highest number of such variants. Nonetheless, convergent genes found in the six illustrated vocal learners were significantly enriched in learning-related functions, offering novel biological insights into the molecular underpinnings of vocal learning.
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Daniel Bolnick @danielbolnick.bsky.social · 25/11/2025
Did you receive a Student Research Award from the American Society of Naturalists @asn-amnat.bsky.social ? We'd love to hear what you achieved with those awards (or, please share with someone who had one), even going back many years: docs.google.com/forms/d/e/1F...
docs.google.com
American Society of Naturalists Student Research Award Outcomes
The American Society of Naturalists (ASN) gives out student research awards (generally $2000 each) to support activities of our student members. We request that Student Research Award recipients provi...
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I-75 Scientist @flscitriguy.bsky.social · 11/12/2025
I think some folks might be happy to see this. NIGMS MIRA R35 for EI/NI has been published. PAR-26-121 files.simpler.grants.gov/opportunitie...
files.simpler.grants.gov
PAR-26-121: Maximizing Investigators' Research Award (MIRA) (R35 - Clinical Trial Optional)
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HHMI @hhmi-science.bsky.social · 18/11/2025
Calling all rising juniors & seniors: Interested in biological or biomedical research? Applications for our ’26 Summer Undergraduate Research Experience Program are now open! Nine weeks, hands-on research, & mentorship from some of the nation’s top scientists — learn more: bit.ly/CechFellows
bit.ly
Summer Undergraduate Research Experience | HHMI
The Cech Fellows Program is a paid, nine-week summer research experience empowering the next generation of scientific leaders.
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Luke Holman @lukeholman.bsky.social · 02/12/2025
“Our findings provide evidence for more divergent evolution of reproductive traits under stronger sexual selection, in line with the tenet that sexual selection may promote divergence even in the absence of environmental differences between populations.”
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Peter Flood @pjflood.bsky.social · 23/11/2025
🐟🌱🧪🌐🌎
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Dr. Wen-Juan Ma | 马文娟 @wenjuanma84.bsky.social · 22/11/2025
Excited that our new collaborative work on Amazonian frogs with giant meiotic chains of 8–12 😲 #SexChromosomes now is out in @commsbio.nature.com! 🐸🧬 Investigating the evolution of large meiotic rings of multiple X and Y chromosomes in two Leptodactylus species 🔗 www.nature.com/articles/s42...
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Genetics Society of America @genetics-gsa.bsky.social · 19/11/2025
In #GENETICS, @alan-aw.bsky.social et al. introduce models for how individual variant effects in admixed individuals may be influenced by ancestry, contributing to work on the genetic architecture of complex traits and their implications for polygenic prediction. buff.ly/34ZvEil
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