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John Novembre

@jnovembre.bsky.social
3.1K followers 291 following 10 posts

Population geneticist, University of Chicago

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John Novembre @jnovembre.bsky.social · 14/04/2026
Spread the word! UChicago BSD is currently searching for an instructional professor (open rank) to help develop and support graduate training in quantitative biology at UChicago. This is an Instructional Professor position (open rank). apply.interfolio.com/183517.
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Yun S. Song @yun-s-song.bsky.social · 06/06/2025
The 2026 Probabilistic Modeling in Genomics (ProbGen) meeting will be held at UC Berkeley, March 25-28, 2026. We have an amazing list of keynote speakers and session chairs: probgen2026.github.io Please help spread the news.
probgen2026.github.io
Home - ProbGen 2026
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John Novembre @jnovembre.bsky.social · 05/06/2025
Excited for our publication on how the geographic scale of a sample affects the discovery of rare, deleterious variants to be out this week. With a mix of theory, simulation, and data analysis, we show when samples are narrow vs broad, the number of variants discovered and their frequencies change
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Na Cai @caina89.bsky.social · 04/12/2024
New work by Andy Dahl and Michal Sadowski on using GxE to study genetics of drug response now out in Cell Genomics www.cell.com/cell-genomic...
cell.com
Characterizing the genetic architecture of drug response using gene-context interaction methods
Sadowski et al. propose a framework to study the genetics of response to commonly prescribed drugs in large biobanks. They quantify the heritability of response to statins, metformin, warfarin, and methotrexate, and identify associated genes. Their analysis also shows the importance of accounting for drug use in genetic risk prediction.
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John Novembre @jnovembre.bsky.social · 04/12/2024
Check it out - PhD student @maggiesteiner.bsky.social's nice thread and link to our new preprint on how sample design, in terms of how geographically narrow vs broad a sample is, impacts the discovery/SFS of deleterious variants.
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John Novembre @jnovembre.bsky.social · 08/11/2024
#ASHG24 - Check out our new methods to reveal population structure through time -- poster 3026F presented today by Ahmed Selim from the lab!
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John Novembre @jnovembre.bsky.social · 06/11/2024
#ASHG24 make your way to today’s Novembre lab posters 3015 (label free reference matching, @LukeAnderTroc) 3016 (rare variant discovery, @maggiecsteiner ) and 4041 (impacts of multigeneration shared environments, @mkiravn) to see some great science!
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John Novembre @jnovembre.bsky.social · 18/09/2024
Come join us! UChicago Human Genetics has an open broad computational faculty search (with an emphasis on probabilistic machine learning). First round of application review will begin ~October 15th. apply.interfolio.com/149891 EOE/Vet/Disability.
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bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 07/08/2024
Allele ages provide limited information about the strength of negative selection www.biorxiv.org/content/10.1101/202…
biorxiv.org
Allele ages provide limited information about the strength of negative selection https://www.biorxiv.org/content/10.1101/2024.08.06.606888v1
For many problems in population genetics, it is useful to characterize the distribution of fitness e
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Graham Coop @gcbias.bsky.social · 20/11/2023
Just reposting James Kitchens blog post on pedigrees and the coalescent. As I'm using the R shiny he made for teaching again this year james-kitchens.com/blog/why-are...
james-kitchens.com
Why Are There So Many Gene Trees?
In evolutionary biology, we often think about the phylogeny of a group, the underlying relationships between the samples. When the comparison is of species (particularly those that are distantly relat...
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