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Pia Cosma

@piacosma.bsky.social
275 followers 32 following 3 posts
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Pia Cosma @piacosma.bsky.social · 28/08/2026
🔥 Our new work is out in Molecular Cell! We developed new “blinking” probes that let us see how our DNA is organized and move at nanoscale in living cells and tissues. 🧬🔬 Huge congrats to Aiping, to Jie and Hongyan for the wonderful collaboration! @CRG.eu authors.elsevier.com/a/1nh683vVUP...
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Centre de Regulació Genòmica (CRG) @crg.eu · 04/06/2026
The CRG is participating in the #EICSummit2026 for the first time, with #ECaBox, the EIC Pathfinder project coordinated by @piacosma.bsky.social‬, in the EIC Projects & Companies Exhibition. A proud milestone for our innovation activities. Thanks Eimear Byrne and Eva Coppola for representing us!
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Pia Cosma @piacosma.bsky.social · 23/10/2025
The @crg.eu 2026 International PhD Programme is now open! Join our international community in Barcelona: www.crg.eu/en/content/t...
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Centre de Regulació Genòmica (CRG) @crg.eu · 19/06/2025
The cold sore virus reshapes the human genome’s architecture, rearranging its shape in three-dimensional space so that HSV-1 can access host genes most useful for its ability to reproduce. Read full paper led by @piacosma.bsky.social in Nature Communications:
nature.com
Herpes simplex virus type 1 reshapes host chromatin architecture via transcription machinery hijacking - Nature Communications
Here, the authors show how HSV-1 rewires the host cell’s chromatin architecture during lytic infection by hijacking transcription machinery and forming contacts between viral and host genomes.
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natdc.bsky.social @natdc.bsky.social · 03/06/2025
This is one of a kind research outreach event. Scientists and artists have gathered together to deliver this sensory experience!
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Pia Cosma @piacosma.bsky.social · 06/05/2025
Excited to share our Journal Club discussion on the invention of STORM microscopy, just published in Nature Reviews Molecular Biology! @natrevmcb.bsky.social @crg.eu rdcu.be/ekUL7
rdcu.be
The diffraction limit of light taken by storm
Nature Reviews Molecular Cell Biology - Pia Cosma recounts the development of STORM, which was the first microscopy method to break the diffraction limit of light.
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Nature Reviews Molecular Cell Biology @natrevmcb.nature.com · 06/05/2025
New Online! The diffraction limit of light taken by storm
bit.ly
The diffraction limit of light taken by storm
Nature Reviews Molecular Cell Biology, Published online: 06 May 2025; doi:10.1038/s41580-025-00856-xPia Cosma recounts the development of STORM, which was the first microscopy method to break the diffraction limit of light.
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Centre de Regulació Genòmica (CRG) @crg.eu · 25/03/2025
We're very excited to announce the ECaBox Symposium in Barcelona on the 3rd of June 2025. Join global experts exploring the latest innovations in regenerative medicine for eye disease. Organised by @piacosma.bsky.social. Registration is now open!
ecabox.eu
ECaBox Symposium: Seeing the Future - EcaBox
Register for the ECaBox Symposium: Seeing the Future on 3rd June 2025, a full-day event bringing together leading experts to discuss the latest advancements in eye disease, retinal regeneration, and t...
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TranSpread @transpread.bsky.social · 26/03/2025
In a study published in Horticulture Research, a research team leveraged ATAC-seq technology to profile chromatin accessibility in P. expansum during its vegetative growth and infection phases. #ATAC-seq #chromatin accessibility Details: doi.org/10.1093/hr/uhae264
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Evgeny Kvon @evgenykvon.bsky.social · 26/03/2025
So, is it compaction or decompaction? Here is a notable alternative hypothesis: "Our data suggest that the process of..loop extrusion per se is not required for enhancer function..Rather, it is the chromatin compaction brought about by loop extrusion that may be the important factor to consider."
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Abhinav Jain Ph.D. @abhinavjain-phd.bsky.social · 26/03/2025
It was a pleasure to showcase our lab’s expertise in assays for DNA-protein interactions (ChIP & CUT&RUN), chromatin accessibility & more at #ABRF2025 (thanks for the invitation). A great discussion on how Epigenomics core @mdanderson.bsky.social is making impact to advance research missions.
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Journal of Cell Science @jcellsci.bsky.social · 26/03/2025
Our Editor Megan King @luskinglab.bsky.social is attending our Biologists @ 100 conference. Reach out to Megan if you have questions about submitting your research to JCS or visit our website to find out more: journals.biologists.com/jcs/pages/re... #biologists100
Journal of Cell Science logo
Meet the Editor at Biologists @ 100: Megan King

Areas of expertise: Nuclear pores complexes, nuclear organisation, nuclear integrity, nuclear mechanics, chromatin structure and dynamics, mechanotransduction, quality control.
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EpiCypher @epicypher.bsky.social · 25/03/2025
🧪🧬 Curious how your drug actually works? Join our free webinar TOMORROW, 11AM ET to explore how chromatin mapping assays can uncover drug mechanisms of action. Great for drug developers + preclinical researchers in oncology, immunology, and beyond. 🔗 Register: www.genengnews.com/multimedia/w...
Trying to understand drug mechanism of action? Epigenomics may be a great solution for you. Attend this free webinar March 26 at 11 AM ET to learn more: https://www.genengnews.com/multimedia/webinars/decoding-drug-mechanism-of-action-with-chromatin-mapping-assays/
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ukybiology.bsky.social @ukybiology.bsky.social · 25/03/2025
Planarian stem cells have many unique properties, mediated in part by their dynamic chromatin state. The Duncan lab recently showed that chromatin remodeling protein BPTF is critical for maintaining these powerful functions. bmcgenomics.biomedcentral.com/articles/10....
bmcgenomics.biomedcentral.com
Chromatin remodeling protein BPTF mediates chromatin accessibility at gene promoters in planarian stem cells - BMC Genomics
Background The regulation of chromatin accessibility is essential in eukaryotic cells as one of several mechanisms that ensure gene activation occurs at appropriate times and in appropriate cell types...
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Proceedings of the National Academy of Sciences @pnas.org · 25/03/2025
A genetic study of 11,555 people finds 60 genes implicated in congenital heart disease, a condition that affects 1–1.8% of all live births. The study could inform the development of early molecular diagnosis tools. In PNAS: www.pnas.org/doi/10.1073/...
Single-cell expression during mouse gastrulation of genes enriched in probands with isolated congenital heart disease or neurodevelopmental delay and extracardiac findings. Single-cell RNA sequencing from mouse gastrulation for 28 genes associated with isolated CHD probands (in pink) or neurodevelopmental delay and extracardiac findings (in purple) are shown. On the vertical axis, cell types are sorted for heart (red), brain (blue), and other tissues (green). Expression levels are scaled to the greatest transcripts per million reads for each gene across all tissues. Chromatin genes are annotated with a white dot in the purple bar.
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Shicheng Guo @shihcheng.bsky.social · 26/03/2025
Plasmodium falciparum's life cycle relies on Snf2L for gene expression control within its high AT content chromatin. Essential discovery! PMID:39972139, Nature 2025, @Nature doi.org/10.1038/s41586-025-08595-x #Medsky #Pharmsky #RNA #ASHG #ESHG 🧪
doi.org
Plasmodium blood stage development requires the chromatin remodeller Snf2L | Nature
The complex life cycle of the malaria parasite Plasmodium falciparum involves several major differentiation stages, each requiring strict control of gene expression. Fundamental changes in chromatin structure and epigenetic modifications during life cycle progression suggest a central role for these mechanisms in regulating the transcriptional program of malaria parasite development1–6. P. falciparum chromatin is distinct from other eukaryotes, with an extraordinarily high AT content (>80%)7 and highly divergent histones resulting in atypical DNA packaging properties8. Moreover, the chromatin remodellers that are critical for shaping chromatin structure are not conserved and are unexplored in P. falciparum. Here we identify P. falciparum Snf2L (PfSnf2L, encoded by PF3D7_1104200) as an ISWI-related ATPase that actively repositions P. falciparum nucleosomes in vitro. Our results demonstrate that PfSnf2L is essential, regulating both asexual development and sexual differentiation. PfSn
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Molecular Cell @cp-molcell.bsky.social · 25/03/2025
A unified model for cohesin function in sisterchromatid cohesion and chromatin loop formation
dlvr.it
A unified model for cohesin function in sisterchromatid cohesion and chromatin loop formation
Structural maintenance of chromosomes (SMC) complexes are thought to shape genomes by extruding DNA loops, but recent genetic tests have challenged the “loop extrusion hypothesis.” Here, Uhlmann explores whether SMC complexes might form chromatin loops by sequential DNA-DNA capture, akin to how cohesin establishes sister chromatid cohesion.
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zhoujt.bsky.social @zhoujt.bsky.social · 25/03/2025
9/10 Preprint at www.biorxiv.org/content/10.1.... Data at huggingface.co/zhoujt1994/. Check it out if you're interested in epigenomics, chromatin structure and function, and single cell biology in diverse organ systems.
biorxiv.org
Human Body Single-Cell Atlas of 3D Genome Organization and DNA Methylation
Higher-order chromatin structure and DNA methylation are critical for gene regulation, but how these vary across the human body remains unclear. We performed multi-omic profiling of 3D genome structur...
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bioRxivpreprint @biorxivpreprint.bsky.social · 25/03/2025
Metabolic early warning signals of epigenetic tipping points under chromatin modifier competition www.biorxiv.org/content/10.1101/202…
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bioRxiv SysBio @biorxiv-sysbio.bsky.social · 25/03/2025
Metabolic early warning signals of epigenetic tipping points under chromatin modifier competition www.biorxiv.org/content/10.1101/202…
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Lillemeier lab @lillemeier-lab.bsky.social · 25/03/2025
Top-notch activation. Notch signals enhance effector CD8 T cell generation in #vaccination or infection. Fibroblastic reticular cells are the source of Notch signal. The signal is associated with chromatin opening in regions occupied by bZIP transcription factors. @jem.org doi.org/10.1084/jem....
doi.org
Early Notch signals from fibroblastic reticular cells program effector CD8+ T cell differentiation
Fibroblastic reticular cells are the source of Notch ligands promoting the differentiation of short-lived effector CD8+ T cells. Induction of early Notch s
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Cambridge RNA @cambridgerna.bsky.social · 25/03/2025
Inside the nucleus, lncRNAs act as molecular architects, shaping gene expression and chromatin landscapes. But tracking them in action? That's the tricky part! Cutting edge imaging techniques are revealing how RNAs like Xist spread and silence genes, reshaping our understanding of epigenetics!
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CRC 1064 Chromatin Dynamics @crc1064.bsky.social · 25/03/2025
#ChromatinDays – Join Us! SFB 1064's final annual meeting! Talks, reunion & BBQ Bash 🍖 on May 26-27. Guest speakers: former SFB & IRTG members. Alumni, don’t miss the BBQ & IRTG Satellite Session! 📢 Register now! Scan the QR code or visit: www.sfb1064.med.uni-muenchen.de/chromatin-da... 🐝 there!
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Nadezhda Azbukina @nazbukina.bsky.social · 24/03/2025
3/ We developed a new approach to map the chromatin accessibility data to primary atlases using cisTopics loadings. We find that organoid cells recapitulate primary counterparts not only on transcriptomic, but also on chromatin accessibility level!
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Andi Brunner @andibrunner.bsky.social · 24/03/2025
We thus propose that mitotic chromosome shape is dictated by Condensin-driven extrusion of long and overlapping loops up to a density set by chromatin self-repulsion.
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EpiCypher @epicypher.bsky.social · 24/03/2025
Hey #ABRF attendees! Are you interested in setting up CUT&RUN chromatin mapping services? Then make sure to see Cheryl Szany's talk about optimizing CUT&RUN services, TODAY at 4:30PM! Stop by booth 103 for additional info and training opportunities to get started with CUT&RUN in your core today!
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bioRxivpreprint @biorxivpreprint.bsky.social · 25/03/2025
Studies on Gene Enhancer with KSHV mini-chromatin www.biorxiv.org/content/10.1101/202…
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 25/03/2025
Studies on Gene Enhancer with KSHV mini-chromatin www.biorxiv.org/content/10.1101/202…
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Shicheng Guo @shihcheng.bsky.social · 25/03/2025
Discover insights from 1-nt gap repair by DNA Pol β in chromatin! Using biochemical assays and cryo-EM, this study unravels the complex mechanisms in 123 characters. PMID:40097433, Nat Commun 2025, @NatureComms doi.org/10.1038/s41467-025-57915-2 #Medsky #Pharmsky #RNA #ASHG #ESHG 🧪
doi.org
Structural basis of gap-filling DNA synthesis in the nucleosome by DNA Polymerase β | Nature Communications
Single-strand breaks (SSBs) are one of the most prevalent forms of DNA damage found in the chromatinized genome and are repaired by single-strand break repair (SSBR) or base excision repair (BER). DNA polymerase beta (Pol β) is the primary enzyme responsible for processing the 1-nt gap intermediate in chromatin during SSBR and BER. To date, the mechanism used by Pol β to process a 1-nt gap in the context of chromatin remains poorly understood. Here, we use biochemical assays and cryogenic electron microscopy (cryo-EM) to determine the kinetic and structural basis of gap-filling DNA synthesis in the nucleosome by Pol β. This work establishes that Pol β uses a global DNA sculpting mechanism for processing 1-nt gaps in the nucleosome during SSBR and BER, providing fundamental insight into DNA repair in chromatin. DNA polymerase beta (Pol β) is the primary enzyme responsible for processing 1-nt gaps in chromatin during DNA repair. Here, the authors determine the kinetic and structural basi
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Nature Genetics @natgenet.nature.com · 24/03/2025
@naturegenet.bsky.social editors Petra Gross and Chiara Anania will be joining the Keystone Symposia “Epigenetics in Development and Disease” & “Interplay of Chromatin Architecture and Transcription Regulation”. Please feel free to reach out to them if you want to discuss your research!
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React4Kids @r4knetwork.bsky.social · 24/03/2025
NEW PUBLICATION! Researchers from the @r4knetwork.bsky.social just revealed the progressive chromatin rewiring induced by the ETO2::GLIS2 fusion in the onset of pediatric leukemia. A collaboration between @gustaveroussy.fr, @institutimagine.bsky.social, & many more. doi.org/10.1182/bloo...
ashpublications.org
Progressive chromatin rewiring by ETO2::GLIS2 revealed in a human iPSC model of pediatric leukemia initiation
Key Points. Precise engineering of the ETO2::GLIS2 fusion in iPSC reproduces leukemogenesis in a developmentally-relevant human cell contextThe temporal or
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Plant Physiology @plantphys.bsky.social · 24/03/2025
CHROMATIN REMODELING FACTOR 28 and HEAT SHOCK FACTOR A2 activate BINDING IMMUNOGLOBULIN PROTEIN 3 under heat stress (Haiyan Li, Minmin Liang, Guohong Huang, Haiwei Fan, Ruiyao Liu, Lijun Cao, Minghui Lu) doi.org/10.1093/plph... #PlantScience
doi.org
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@PhysGenCenter @physgencenter.bsky.social · 24/03/2025
This Friday! Lothar Schermelleh,University of Oxford presents the Monthly Seminar on Physical Genomics: Quantitative Super-Resolution Microscopy to Reveal Insights into Mesoscale Chromatin Organization Live on Zoom, Friday March 28 @ 12pm CT Free registration at: tinyurl.com/2rb7yzfz #chromatin
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Molecular Cell @cp-molcell.bsky.social · 24/03/2025
Exportin-1 functions as an adaptor for transcription factor-mediated docking of chromatin at the nuclear pore complex
dlvr.it
Exportin-1 functions as an adaptor for transcription factor-mediated docking of chromatin at the nuclear pore complex
Many genes physically interact with the nuclear pore complex (NPC), which requires transcription factors (TFs). Ge et al. show that the exportin Crm1 binds TFs and nuclear pore proteins to dock chromatin at the NPC and to stimulate transcription. This function of Crm1 is distinct from its role in nuclear export.
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Colin Semple @csemple.bsky.social · 24/03/2025
New publication from the lab! We used a machine learning approach to predict chromatin loop dynamics during human spermatogenesis - and find these structures do not direct gene expression but may drive the positioning of recombination events bmcbiol.biomedcentral.com/articles/10....
bmcbiol.biomedcentral.com
CTCF-anchored chromatin loop dynamics during human meiosis - BMC Biology
Background During meiosis, the mammalian genome is organised within chromatin loops, which facilitate synapsis, crossing over and chromosome segregation, setting the stage for recombination events and...
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Fena Ochs @fenaochs.bsky.social · 25/03/2025
Wonderful, thought-provoking review by Sir Adrian Bird on cohesin loop extrusion as disrupter of chromatin organisation rather than generator. Great read! www.sciencedirect.com/science/arti...
sciencedirect.com
Cohesin as an essential disruptor of chromosome organization
Cohesin is a multi-subunit molecular machine that is able to create lateral chromatin loops within a linear chromosome fiber. Despite intense study, a…
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EpiCypher @epicypher.bsky.social · 24/03/2025
🧬🧪Exciting chromatin research conference hosted by @aicc-ireland.bsky.social in May! The deadline for poster/talk abstracts is April 28, see details in the post below.
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All-Ireland Chromatin Consortium @aicc-ireland.bsky.social · 24/03/2025
We are very excited to launch the registration for our 2025 symposium on 'Chromatin, Epigenetics and Transcription' today! Join us at @tcddublin.bsky.social on May 28th for this event featuring keynote, new PI and PhD/postdoc talks and posters! allirelandchromatinconsortium.ie/annual-meeti...
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Tyler Weaver @tmweaver.bsky.social · 24/03/2025
The final piece of my postdoctoral work in the @freudlab.bsky.social was recently published! Quite amazing what this small little repair polymerase can do to fill 1-nt gaps in chromatin. www.nature.com/articles/s41...
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arXiv cs.LG Machine Learning @cslg-bot.bsky.social · 24/03/2025
genomic data. Extensive experiments on various genomic benchmarks have demonstrated state-of-the-art performance across multiple tasks, including biotype classification, regulatory region identification, chromatin profiling prediction, variant [5/6 of arxiv.org/abs/2503.16565v1]
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Onco404 @onco404.bsky.social · 24/03/2025
🎯 Noncoding Impact: SVs near chromatin boundaries in neuroblastoma suggest noncoding regions also play a role. 📍Importance Rare SVs explain 1.1–5.6% of heritability, filling gaps in the "missing inheritance" puzzle. #Onco404 #PediatricCancer #Cancer #Oncology #Genomics
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Takaku Lab @takakulab.bsky.social · 24/03/2025
Our second cell-free DNA manuscript is here! In collaboration with Dr. Takada’s group, we explore how abemaciclib treatment response in metastatic breast cancer can be monitored via circulating chromatin fragments: www.researchsquare.com/article/rs-5...
researchsquare.com
Exploring Mechanism of Action of Abemaciclib in Breast Cancer Through Circulating Chromatin Fragment
Cell free DNA (cfDNA) analysis has a large potential for cancer patient diagnosis. Given the evidence that cfDNA partially preserves chromatin architecture of tumor cells, it potentially allows the de...
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Dr. Karmella Haynes @drkhaynes.bsky.social · 23/03/2025
I’m looking for arachnid and cnidarian genomes outside of what is linked to UniProt. An interesting a.a. variation in chromatin protein CBX8 shows up only in orb weavers (A. ventricosus & A. bruennichi) and a cnidarian (E. diaphana). Photo: Hibiscus Moon cocktail, The General Muir.
Hibiscus Moon cocktail at the The General Muir restaurant. Coup style glass filled with a dark pinkish purple drink topped with a lighter purple egg foam layer.
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Ron Beavis ❌ @ronbeavis.mastodon.social.ap.brid.gy · 23/03/2025
Upstream binding transcription factor (UBTF:p) is a chromatin binding subunit with 7 high mobility group box domains that latch on to DNA prior to rRNA Pol I transcription. While it doesn't seem to need R+di/mono-methyl to do its work, it does utilize S/T+phosphoryl, K+acetyl & K+ubiquityl.
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Ronald Beavis ❌ @ronbeavis.bsky.social · 23/03/2025
Upstream binding transcription factor (UBTF:p) is a chromatin binding subunit with 7 high mobility group box domains that latch on to DNA prior to rRNA Pol I transcription. While it doesn't seem to need R+di/mono-methyl to do its work, it does utilize S/T+phosphoryl, K+acetyl & K+ubiquityl.
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Anja Groth @groth-anja.bsky.social · 23/03/2025
Cells control the supply of new histones to chromatin by blocking histone chaperone function - see here how Codanin-1 sequesters 4 ASF1 molecules.
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bioRxivpreprint @biorxivpreprint.bsky.social · 23/03/2025
A metabolism-chromatin axis promotes ribosome heterogeneity in the human malaria parasite www.biorxiv.org/content/10.1101/202…
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Teif lab @teiflab.bsky.social · 23/03/2025
Do et al., 2025. Binding domain mutations provide insight into CTCF’s relationship with chromatin and its contribution to gene regulation www.cell.com/cell-genomic...
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 23/03/2025
A metabolism-chromatin axis promotes ribosome heterogeneity in the human malaria parasite www.biorxiv.org/content/10.1101/202…
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Science Writers and Communicators of Canada @swc-can.bsky.social · 22/03/2025
Introducing the SciArt Series! 🎨🧬 We’re kicking things off with Sonhita @sonhita.bsky.social, a biologist and science illustrator whose work transforms molecular biology into whimsical, captivating art. (continued in the comments)
A colourful illustration showing DNA replication with a yellow background.A dark laboratory with a wanted poster showing differen functional RNA'sTwo hands with henna designs cupped and holding a science form with plants and flowers surrounding intertwined with DNA strands and other microbiology illustrations.Patterned organization of DNA and chromatin into higher-order structures superimposed on the fractal architecture of the fiddlehead fern, with chromosome territories enlarging from spores originating in the fern’s leaves.
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