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Lillie Bell

@lilliebell.bsky.social
674 followers 530 following 11 posts

BIF PhD Student @ Clausen Lab, IMP Vienna using structural biology and biochemistry to study the ubiquitin machinery

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Reposted by Lillie Bell
Clausen Lab @clausenlab.bsky.social · 13/10/2026
could not be prouder of lillie and the fantastic story she uncovered - from a giant E3 ligase with an unexpected dimer switch to moyamoya mutations that hijack its regulation. a beautiful PhD project, full of surprises and scientific creativity doi.org/10.64898/202... - bsky.app/profile/lill...
doi.org
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Alina Thielen @alinathielen.bsky.social · 12/10/2026
I am thrilled to share that my PhD work is now published online in Molecular Cell! 🎉 www.cell.com/molecular-ce... Have a look if you like to learn how the essential amino acid tryptophan directly controls the stability of its metabolic enzyme TDO2 besides its role as a substrate!
sciencedirect.com
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Lillie Bell @lilliebell.bsky.social · 12/10/2026
Happy to share my PhD work on the regulatory mechanism of E3 ligase RNF213! RNF213 is not a monomer, but a dimer that switches between inhibited and activated states in an ATP-dependent manner. We tracked the activation mechanism and showed how disease mutations can destabilize the inhibited state.
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Vytaute Boreikaite @vytaute.bsky.social · 08/10/2026
I’m very excited to share my postdoc work in the @plaschkalab.bsky.social, where we investigated the very final act of splicing – spliceosome termination, revealing the stepwise dismantling of the spent spliceosome www.nature.com/articles/s41... (1/11)
nature.com
Mechanism of spliceosome termination - Nature
A coordinated sequence of RNA helicases and associated factors dismantles normal and defective spliceosome complexes to enable intron degradation and ensure accurate gene expression.
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Max Perutz Labs Vienna @maxperutzlabs.ac.at · 07/09/2026
Congrats, Milica Mihailović from the Karagöz lab, on successfully defending her thesis titled "Dissecting the role of UFMylation in endoplasmic reticulum-associated protein quality control"! 🤩🎉 @univie.ac.at @meduniwien.ac.at
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IMP @impvienna.bsky.social · 03/09/2026
IMP postdoc Elias Adriaenssens has received an ERC Starting Grant worth close to €1.5 million. He will study how cells decide when to dispose of their organelles—and how they prevent healthy ones from being destroyed: bit.ly/4zUBQMy
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Silvia Ramundo @sramundo.bsky.social · 19/08/2026
A stress response can be a great starting point for discovering new biology! By following genes regulated during the chloroplast unfolded protein response, we’re discovering novel factors involved in chloroplast homeostasis. Here’s the first one we characterized: www.pnas.org/doi/10.1073/...
pnas.org
VIA1 is a conserved regulator of thylakoid membrane integrity that acts through VIPP1 | PNAS
Thylakoid membranes are indispensable for oxygenic photosynthesis, yet the mechanisms that protect these membranes from photooxidative damage remai...
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Elliott Lab @elliottlab.bsky.social · 14/08/2026
Huge effort from the Lab into the mechanics of the mysterious #ubiquitin like protein FAT10 – taking structural snapshots of FAT10 activation by UBA6 and transfer onto UBE2Z plus really interesting insights into InsP6 regulating FAT10 conjugation pathways: www.nature.com/articles/s41...
nature.com
Structural determinants for FAT10 activation and transfer from UBA6 to E2 enzymes - Nature Communications
Cryo-EM captures FAT10 activation and transfer from UBA6 to E2 UBE2Z, revealing FAT10 monopolises UBA6. Efficient transfer requires E2 engagement of both FAT10 UBL domains, particularly UBL2, and co-o...
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Juan Carlos De la Concepcion @delaconcepcionjc.bsky.social · 05/08/2026
PLEASE SHARE! New job openings in my lab @zmbp-tuebingen.bsky.social. We have a broad interest into the mechanistic basis of how molecular complexes are rewired during cellular development in plants and during invasion by pathogens. 🌱🍄🔬 See details below 👇 #PlantSciJobs
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Silvia Ramundo @sramundo.bsky.social · 24/06/2026
1/7 New preprint: we found that Chlamydomonas carries a giant and unexpectedly elaborate chloroplast RNA polymerase with 12 previously unknown subunits, overturning the idea that the complexity of this organellar enzyme emerged during plant terrestrialization! www.biorxiv.org/content/10.6...
biorxiv.org
The structure of a 2-MDa chloroplast RNA polymerase reveals unexpected evolutionary complexity
Transcription in chloroplasts depends on the Plastid-Encoded RNA polymerase (PEP), a bacterial-derived enzyme whose catalytic core remains encoded by the highly reduced genome inherited from the cyano...
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Elizabeth Jacobs, PhD @elizabethjacobs.bsky.social · 18/06/2026
RFK Jr. says that HPV vaccine is “dangerous and defective”. A new study from England shows that HPV vaccines have reduced deaths from cervical cancer to ZERO for women aged 20-24. Significant reductions in older age groups were observed as well, though the latter have lower vaccination coverage.
thelancet.com
Cervical cancer mortality trends following HPV vaccination in England, 2001–24: an analysis of population-based mortality data
Our findings provide the first robust national-level evidence, albeit observational, that high HPV vaccination coverage is associated with a substantial reduction in cervical cancer deaths. This is sh...
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Clausen Lab @clausenlab.bsky.social · 21/05/2026
Open Postdoc Position - Giant E3 ligases: mysterious mechanisms & non‑protein substrates. Interested? Join us to uncover how these molecular giants tag lipids, RNAs, sugars beyond proteins, on organelles and pathogens, to defend the cell. Details & Application here www.imp.ac.at/career/open-...
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Manon Demulder @manondemulder.bsky.social · 11/03/2026
Excited to announce I’m starting a new lab at @gmivienna.bsky.social (Vienna BioCentre) in Sept 2026 We study how carbon fixation is inherited and maintained in algae using cryo-ET, imaging, environmental sampling&more Looking for people who want to build the lab together, get in touch! #teamtomo
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Clausen Lab @clausenlab.bsky.social · 06/03/2026
Ubiquitin & Friends Fiesta in Vienna, 29-30 April 2026. Great speakers, small size, a friendly community, perfect for early-career researchers to connect with fellow ubiquitin enthusiasts. Sign up at www.protein-degradation.org/symposium/ and submit abstracts for talks and awards. #ubfriends26
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Max Spicer @mfdspicer.bsky.social · 25/02/2026
Excited to share this work done during my PhD here in Vienna! We show how chromatin compaction prevents the release of fragmented DNA in apoptosis, and use new tools to study the mechanism of compaction itself. See our summary/"bluetorial" below & our preprint here: www.biorxiv.org/content/10.6...
biorxiv.org
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Institute of Molecular Biology (IMB) @imbmainz.bsky.social · 06/02/2026
@lorenzoorts.bsky.social previously worked as a postdoctoral fellow at @impvienna.bsky.social in Austria. She will establish a new lab at IMB to investigate how mRNA translation is activated in the early embryo. Welcome to IMB Laura! 💐 Read more here: www.imb.de/about-imb/ne...
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Institute of Molecular Biology (IMB) @imbmainz.bsky.social · 09/02/2026
Ulrich’s research will help advance our understanding of RNA biology & gene regulation, as well as how these mechanisms might be altered during viral infections & other diseases. @hohmannulrich.bsky.social comes from the @impvienna.bsky.social / @imbavienna.bsky.social www.imb.de/about-imb/ne...
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Juan Carlos De la Concepcion @delaconcepcionjc.bsky.social · 30/01/2026
Please share! My group at @zmbp-tuebingen.bsky.social is offering a post-doctoral position (4 years). We look for a structural biologist with experience in Cryo-EM/Cryo-ET to investigate the mechanisms of host invasion by pathogenic fungi. Deadline February 28th! uni-tuebingen.de/universitaet...
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Jakob Farnung @jakobfarnung.bsky.social · 06/01/2026
When RNA Degradation 🤝 meets 🤝 Protein Degradation! tinyurl.com/E3TDMD In a collaboration of @bartellab.bsky.social and Schulman lab, we show that, in target-directed microRNA degradation (TDMD), 2-RNA-factors recruit an E3 ligase and induce the degradation of not only a protein but also RNA (1/5).
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Marcin J. Suskiewicz @msuskiewicz.eurosky.social · 21/12/2025
Structural Basis for Substrate Recruitment and Catalytic Ubiquitin Transfer by the E2/E3 Hybrid Enzyme UBE2O.
sciencedirect.com
Structural Basis for Substrate Recruitment and Catalytic Ubiquitin Transfer by the E2/E3 Hybrid Enzyme UBE2O.
UBE2O is a promiscuous ubiquitin ligase involved in cellular quality control pathways. Along with BIRC6, UBE2O is one of only two E2 enzymes that can …
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Jack Bravo @jpkbravo.bsky.social · 02/12/2025
📢 We have multiple open PhD positions to study bacterial immune systems using cutting-edge cryo-EM, microbiology, and biochemistry in our group! Join us and uncover how bacterial defenses eliminate predators and engineer next-gen biotech tools. 🔥 Apply by Jan 8, 2026 Details: phd.pages.ista.ac.at
phd.pages.ista.ac.at
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Gavin Woodruff @weirdworms.bsky.social · 23/11/2025
Recurrent evolution of selfishness from an essential tRNA synthetase in Caenorhabditis tropicalis www.nature.com/articles/s41...
nature.com
Recurrent evolution of selfishness from an essential tRNA synthetase in Caenorhabditis tropicalis - Nature Ecology & Evolution
In Caenorhabditis tropicalis, three toxin–antidote elements arose via gene duplication from the essential tRNA-synthetase subunit FARS-3. The ancestral antidote probably acquired affinity for FARS-3, ...
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Marcin J. Suskiewicz @msuskiewicz.eurosky.social · 17/11/2025
Very happy to share our collaborative project on FAM118 proteins - noncanonical sirtuins that form filaments and process NAD in human and other vertebrate cells.
rdcu.be
Filament formation and NAD processing by noncanonical human FAM118 sirtuins
Nature Structural & Molecular Biology - Baretić and Missoury et al. identify vertebrate proteins FAM118B and FAM118A as sirtuins similar to bacterial antiphage enzymes and show that...
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Max Perutz Labs Vienna @maxperutzlabs.ac.at · 31/10/2025
📢 Open Call! The Max Perutz Labs invite applications for a Full Professorship in Integrative Structure Biology with a focus on in situ structural biology using cryo-electron tomography (cryo-ET) and related methods. More details ➡️ tinyurl.com/brswbymu
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Waggoner Lab @labwaggoner.bsky.social · 17/10/2025
Split-site ubiquitination gives ZNFX1 new power in RNA defense @cellcellpress.bsky.social www.cell.com/molecular-ce... www.sciencedirect.com/science/arti...
cell.com
Split-site ubiquitination gives ZNFX1 new power in RNA defense
Recent work by Grabarczyk et al. uncovers the molecular mechanism by which ZNFX1, an interferon-stimulated gene, employs a novel split-site E3 ligase domain structure to ubiquitinate both protein lysi...
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Philipp Dexheimer @philippdexheimer.bsky.social · 16/10/2025
Happy #PortfolioDay! I'm a bloke who traded investigating nematodes & RNAs for making Art all day every day #NoMoreLabCoatsJustPaintCoats
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Rupert Faraway @rupertfaraway.bsky.social · 13/10/2025
If you, or anyone you know, is looking for a PhD position, I have no doubt that Ulrich's lab is a fantastic choice! I'm tempted to do a second PhD in this lab.
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Dan Grabarczyk @dangrabarczyk.bsky.social · 28/08/2025
Glad to share the final version of our story about the UBR4 complex, an E4 ligase protein quality control hub @science.org. Now with more cryo-EM structures and a deeper dive into substrate recognition, especially escaped mitochondrial proteins @clausenlab.bsky.social www.science.org/doi/10.1126/...
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IMP @impvienna.bsky.social · 28/08/2025
Scientists uncovered how the immune protein ZNFX1 enables cells to walk the fine line between fighting infection & avoiding autoimmune damage. ZNFX1 can ubiquitinate & compact host & viral RNA into molecular condensates, extending ubiquitin biology to RNA itself. More: www.imp.ac.at/news/article...
imp.ac.at
ZNFX1 compacts and tags RNA to keep immunity in check
Tim Clausen’s lab at the IMP and collaborators have uncovered how the ancient immune protein ZNFX1 enables cells to walk the fine line between fighting infection and avoiding autoimmune damage. The te...
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Dan Grabarczyk @dangrabarczyk.bsky.social · 27/08/2025
Happy to share our work on the structure and function of the unusual E3 ligase ZNFX1 @cp-cell.bsky.social. It uses a nucleic acid-activated transthiolation mechanism, ubiquitinating and clustering RNA to protect cells in an immune response. @clausenlab.bsky.social www.cell.com/cell/fulltex...
cell.com
A split-site E3 ligase mechanism enables ZNFX1 to ubiquitinate and cluster single-stranded RNA into ubiquitin-coated nucleoprotein particles
Grabarczyk et al. show the structure and mechanism of a non-canonical ubiquitin ligase, which is activated through nucleic-acid-induced oligomerization and is critical for cell survival during immune ...
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Elias Adriaenssens @elias-adriaenssens.bsky.social · 25/07/2025
And it's out! I'm thrilled to share our new paper (Adriaenssens et al., Nat Cell Biol 2025). This paper describes a new mechanism for the initiation of autophagosome biogenesis. We found that this WIPI-ATG13-driven pathway is preferentially used by a group of transmembrane autophagy receptors.
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Christa Buecker @chribue.bsky.social · 02/07/2025
Exciting and rare opportunity to join the @maxperutzlabs.bsky.social and the @viennabiocenter.bsky.social as a Full Professor! www.nature.com/naturecareer...
nature.com
Full Professorship in Molecular Mechanisms of Disease - Vienna BioCenter, Austria job with Max Perutz Labs, University of Vienna | 12841053
Join theMax Perutz Labs as Full Professor to unravel disease mechanisms—from metabolism and stress to RNA regulation, epigenetics, and immunity.
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Journal of Cell Biology @jcb.org · 27/06/2025
The E3 ligase Parkin ubiquitinates many proteins. Koszela, Walden (@hw1o9.bsky.social) et al. @uofglasgow.bsky.social‬ identify and biochemically validate a direct Parkin interaction with a substrate, Miro1. rupress.org/jcb/article/...
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Eric Topol @erictopol.bsky.social · 23/06/2025
This is wild! Engineering E. coli bacteria to turn plastic waste into paracetamol (Tylenol) www.nature.com/articles/s41... www.nature.com/articles/s41...
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Molecular Cell @cp-molcell.bsky.social · 21/06/2025
The NAMPT enzyme employs a switch that directly senses AMP/ATP and regulates cellular responses to energy stress
dlvr.it
The NAMPT enzyme employs a switch that directly senses AMP/ATP and regulates cellular responses to energy stress
Zu et al. reveal that AMP binds and inhibits NAMPT, the rate-limiting enzyme in NAD+ biosynthesis from nicotinamide, during energy stress. NAMPT functions as a metabolic sensor linking cellular energy status to NAD+ regulation, suggesting NAMPT activation as a potential therapeutic strategy in energy-deficient conditions such as ischemic stroke.
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Fletcher Lab @fletcherlab.bsky.social · 13/05/2025
Great to see this out. A story that spanned continents, cities and budget codes… www.nature.com/articles/s41... Big thanks to all the teams involved! @clausenlab.bsky.social @e3chembio.bsky.social
nature.com
ATP functions as a pathogen-associated molecular pattern to activate the E3 ubiquitin ligase RNF213 - Nature Communications
RNF213 is an E3 ligase with ATPase activity. Here, the authors show that RNF213 is activated by ATP binding and senses cellular energy states, and reveal a transthiolation mechanism induced by immune ...
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Membrane Enzymology @membraneenzymology.bsky.social · 13/05/2025
Solène’s 4.5 years of postdoctoral work in our lab (she started just before the corona pandemic) has now been published. A heroic effort that revealed -at the single molecule level- that ATP drives the dissociation of an ECF transporter complex under turnover conditions. See rdcu.be/elTKc
rdcu.be
Single-molecule visualization of ATP-induced dynamics of the subunit composition of an ECF transporter complex under turnover conditions
Nature Communications - The association and dissociation dynamics of the ECF transporter complex for vitamin B12 are visualized by single-molecule FRET, highlighting the original transport...
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Florent Waltz @florentwaltz.bsky.social · 06/05/2025
You want to start tomography? Solve structures inside cells? Reach Nyquist 😳 ? @phaips.vd.st and I have a website for you! tomoguide.github.io You'll find a tutorial on how to reconstruct tomograms, pick particles and do subtomogram averaging, using different software! Hope it will be useful !
3.8 angstrom resolution ribosome from 33 tomograms The TomoGuide website
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Ben Engel @cellarchlab.com · 12/04/2025
#TeamTomo is going to be all over chromatin structure and organization in the next years. Beautiful efforts like this are only the beginning! 🧪🧶🧬🔬
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Francesca Chandler @francescachandler.bsky.social · 17/03/2025
Very happy to share the work from my PhD is out today in @naturesmb.bsky.social ! Check it out here if you're interested in molecular glues, cryo-EM, deubiquitylating enzymes or immune signalling: www.nature.com/articles/s41...
nature.com
Molecular glues that inhibit deubiquitylase activity and inflammatory signaling - Nature Structural & Molecular Biology
The BRCC36 isopeptidase complex (BRISC) is a deubiquitylase that stabilizes interferon receptors, driving inflammation. We discovered ‘BRISC molecular glue’ inhibitors (BLUEs) that selectively inactiv...
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Elton Zeqiraj @zeqiraj.bsky.social · 17/03/2025
Excited to report our latest research on new “molecular glues” that specifically lock the BRCC36 isopeptidase complex (BRISC) in an autoinhibited state and reduce interferon signalling. This first-of-its-kind approach could reshape how we target large deubiquitylase (DUB) complexes. rdcu.be/edRwF
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Sylvie Callegari @sylviecallegari.bsky.social · 13/03/2025
Thrilled to share the structure of dimerised human PINK1 docked to an endogenous translocase array on the mitochondrial surface, composed of two TOM complexes, bridged by a VDAC2 dimer! Published today in Science www.science.org/doi/10.1126/... @wehi-research.bsky.social @komanderlab.bsky.social
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Eric Topol @erictopol.bsky.social · 13/03/2025
More than 2 decades ago the PINK1 protein was found to be linked to Parkinson's disease, but its structure and how it was activated was not known. Until @science.org today. A triumph for cryo-EM and structural biology, introducing new targets for drug intervention. www.science.org/doi/10.1126/...
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COS Heidelberg @cosheidelberg.bsky.social · 03/12/2024
We are very happy to welcome Yasin Dagas soon starting as a Heisenberg professor at COS. Yasin's topic is evolutionary cell biology focusing on autophagy in plants and beyond. www.oeaw.ac.at/gmi/research... @dfgpublic.bsky.social
Yasin Dagdas portait
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Bird account @dialecticbio.bsky.social · 03/03/2024
Been thinking about creating a collection of good protein structure figures, as inspiration for my own work. #1 www.nature.com/articles/s41...
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IRB Barcelona @irbbarcelona.org · 13/02/2025
🧪 Researchers at @irbbarcelona.org discover how #mitochondria drive #autophagy. 📰 Autophagy ✍️ Saška Ivanova, Isabel Gordaliza-Alaguero, Antonio Zorzano et al. ➡️ bit.ly/42Tc11q 📌 doi.org/10.1080/1554... #IRBScience #Mitochondria #Scicomm
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The EMBO Journal @embojournal.org · 10/02/2025
Yeast #proteotoxic stress response: Intrinsically disordered protein Roq1 reprograms specificity of #ubiquitin ligase Ubr1 towards four distinct classes of substrates using its N-terminal arginine linked to a short hydrophobic motif Sebastian Schuck and colleagues www.embopress.org/doi/full/10....
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Michael Lazarou @lazaroulab.bsky.social · 06/02/2025
An incredible study and beautiful work. Congratulations all and thank you for getting us involved, it was a pleasure to contribute.
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Sven Klumpe @svenklumpe.bsky.social · 04/02/2025
Extremely excited to be joining the vibrant community of the Vienna BioCenter to build up cryo-ET and cryo-FIB milling on campus soon!
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Marintia Nava-García @marintianava.bsky.social · 31/01/2025
Lipid-CLEM!
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