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Lili Milani

@lilimilani.bsky.social
361 followers 117 following 30 posts

Head of Estonian Biobank & Professor of Pharmacogenomics at the Estonian Genome Centre, University of Tartu.

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Reposted by Lili Milani
Nik Baya @nbaya.bsky.social · 19/08/2026
Introducing the BRaVa results browser v1! 🎉 1.2M+ individuals across 10 global biobanks 44 heritable, disease-relevant traits (and counting) 419M gene- & variant-level association tests ➡️ nikbaya.github.io/brava_browser/
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Nature Human Behaviour @nathumbehav.nature.com · 17/08/2026
Parental haplotype reconstruction in up to 440,209 UK and Estonian individuals reveals recent assortative mating dynamics
dlvr.it
Parental haplotype reconstruction in up to 440,209 UK and Estonian individuals reveals recent assortative mating dynamics
Nature Human Behaviour, Published online: 17 August 2026; doi:10.1038/s41562-026-02556-8Reconstructing parental haplotypes for up to 440,209 UK and Estonian Biobank participants, the authors estimate genetic assortative mating across 69 traits and find that assortment for height and education has intensified in recent generations.
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Estonian Biobank @estbiobank.bsky.social · 13/08/2026
Using #EstBB data, Maris Alver’s team examines how genetics and treatment relate to healthcare use in psychotic disorders & bipolar disorder. While genetic liability was reflected in contact frequency, treatment was the strongest predictor of rehospitalisation. 🧠💊📋🧬 www.medrxiv.org/content/10.6...
medrxiv.org
Longitudinal real-world treatment and hospitalisation dynamics in relation to genetic liability across primary psychotic disorders and bipolar disorder
Primary psychotic disorders (PPD) and bipolar disorder (BD) are characterised by recurrent episodes, long-term pharmacological treatment, and a strong polygenic component. Although clinical trials rem...
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Reposted by Lili Milani
Kaur Alasoo @kauralasoo.bsky.social · 18/06/2026
Happy to share that this work led by @mihkeljesse.bsky.social has now been published at PLOS Genetics! journals.plos.org/plosgenetics... A couple of thoughts below.
journals.plos.org
Ultra-fast genetic colocalisation across millions of association signals
Author summary Over 90% of human genetic variants associated with human traits and diseases lie in non-coding regions of the genome, making it difficult to interpret the mechanisms by which these vari...
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FinnGen @finngen.bsky.social · 18/06/2026
A unique job opportunity to work on some of the most exciting genomic datasets in the world!
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Reposted by Lili Milani
Kaur Alasoo @kauralasoo.bsky.social · 16/06/2026
Huge congratulations to @mihkeljesse.bsky.social for such a well-deserved award!
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Lili Milani @lilimilani.bsky.social · 16/06/2026
Congratulations @jelisavetadzi.bsky.social! Lovely to see brilliant and hardworking PhD students getting such well-deserved recognition ❤️
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Lili Milani @lilimilani.bsky.social · 27/05/2026
🧬 Join us at the 25th International Gene Forum – with stellar speakers from around the world (again)! Register now to secure your spot! 📅 August 25–26, 2026 📍 Estonian National Museum, Tartu, Estonia 🌐 Information & registration: www.geneforum.ee #Geneforum2026 #Geneforum
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ELIXIR Europe @elixir-europe.org · 15/05/2026
📣 The ELIXIR-coordinated EU project, #B1MGplus, is conducting a survey on 💡 the use, access, governance and sustainability of #genomicdata and related services. Provide your insights to 🎯 support the development of a sustainable European genomic data infrastructure. 👉 loom.ly/4uSHoak
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Kenneth Loi @kenjmloi.bsky.social · 27/04/2026
Excited to share our discovery of a new programmable RNA-guided DNA-targeting system hiding inside bacteriophages that predates CRISPR. We call it VIPR (Viral Interference Programmable Repeat), and it uses an entirely new logic to find its targets. Thread + link below.
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Robert Reich @rbreich.bsky.social · 25/03/2026
Still wondering if inequality is out of control?
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Lili Milani @lilimilani.bsky.social · 05/03/2026
Huge thanks to @kauralasoo.bsky.social who stepped up with baby in his arms to lead the discussion of a complex JC paper picked and co-prepared with Maris. Brilliant science, collaboration, real kindness, stepping up for each other, and family first. We need more role models like this. 🫶
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Burak Yelmen @burakyelmen.bsky.social · 24/02/2026
Our paper on detecting GWA signals from neural networks is now published. Here we propose a model- and score-agnostic post hoc framework to detect potentially associated loci from neural networks trained for phenotype prediction. academic.oup.com/nargab/artic...
academic.oup.com
Interpreting artificial neural networks to detect genome-wide association signals for complex traits
Abstract. Investigating the genetic architecture of complex diseases is challenging due to the multifactorial interplay of genomic and environmental influe
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Reposted by Lili Milani
Adam Ameur @adameur.bsky.social · 12/02/2026
Save the date! The Long‑Read Sequencing Uppsala Meeting (#LRUA26) is happening Nov 2–4, with a great lineup of invited and selected speakers Stay tuned — registration and abstract submission will open soon🧬🖥️ lrua.se
lrua.se
Long-Read Sequencing Uppsala, November 2–4, 2026
#LRUA26: Empower your research with long-read sequencing technologies and connect with experts, peers, and industry leaders in Uppsala this November.
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Lili Milani @lilimilani.bsky.social · 11/02/2026
✨ A new star allele was born! Excited to share our first in vivo pharmacokinetic recall study involving 114 participants from @ESTbiobank with previously uncharacterised variants in CYP2C19 and CYP2D6: www.nature.com/articles/s41... #Pharmacogenomics @pharmvar.org @clinpgx.org
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Robert Warmerdam @robertwarmerdam.bsky.social · 06/02/2026
🧬 New preprint alert! After years of collaborative work across 52 datasets we are presenting eQTLGen phase 2: a genome-wide eQTL meta-analysis covering 43,301 blood samples: www.medrxiv.org/content/10.6... (1/8)
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European Society of Human Genetics @eshg.bsky.social · 04/11/2025
New study of 800K+ genomes from gnomAD reveals most “pathogenic” variants in healthy people aren’t truly disease-tolerant. They are explained by annotation errors, mosaicism, or compensatory variants. 🧬 A big step for precision medicine! www.nature.com/articles/s41...
nature.com
Exploring penetrance of clinically relevant variants in over 800,000 humans from the Genome Aggregation Database - Nature Communications
Here the authors provide an explanation for 95% of examined predicted loss of function variants found in disease-associated haploinsufficient genes in the Genome Aggregation Database (gnomAD),…
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Reposted by Lili Milani
genomicsdoge.bsky.social @genomicsdoge.bsky.social · 16/10/2025
1/7 New BMI GWAS out! Using Estonian Biobank (n=204,747) and replication in FinnGen, we show that even in Europe you can still find region-specific biology if you zoom into population-tailored sumstats. Big thanks to co-author @kanwalbatool.bsky.social :)
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PacBio @pacbio.bsky.social · 14/10/2025
#PacBio announces major upcoming advances for #Revio and #Vega designed to lower genome costs, expand multiomic capabilities, and support regulated research. The SPRQ-Nx chemistry, now in beta access, delivers complete genomes for under $300 at scale. View the press release: bit.ly/4o06eyH
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Open Targets @opentargets.org · 18/09/2025
The Open Targets Platform autumn release is out! 🍂 We have ingested the full dataset of over 13 million enhancer-gene regulatory interactions in the human genome across 1,458 DNase-seq experiments covering 369 cell types and tissues from the ENCODE-rE2G model blog.opentargets.org/open-targets...
blog.opentargets.org
Open Targets Platform 25.09 has been released!
The September 25 release includes enhancer-gene data predicted by ENCODE-rE2G, molQTL credible sets for targets, new options for the variant structural viewer, and a number of data updates from GWAS C...
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Alondra Nelson @alondra.bsky.social · 11/09/2025
🧵 The summer of 2025 has been AI's "cruel summer"—wrongful deaths, dangerous therapy chatbots, medical misinformation, facial recognition failures. These aren't isolated glitches but predictable harms from systems deployed without adequate oversight. www.science.org/doi/10.1126/...
science.org
An ELSI for AI: Learning from genetics to govern algorithms
In the United States, the summer of 2025 will be remembered as artificial intelligence’s (AI’s) cruel summer—a season when the unheeded risks and dangers of AI became undeniably clear. Recent months h...
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Lili Milani @lilimilani.bsky.social · 09/09/2025
So excited about this year’s Gene Forum in Tartu being kicked off now by our keynote speaker @eimearekenny.bsky.social 🤩
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Lili Milani @lilimilani.bsky.social · 04/09/2025
Huge congrats @klehto.bsky.social on this achievement!! Her work has already enriched the @estbiobank.bsky.social and will continue to do so! 💙🖤🤍
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Robin Hofmeister @rjhfmstr.bsky.social · 06/08/2025
🚨 Our parent-of-origin study is out in Nature! 🧬 Maternal and paternal alleles can have distinct — even opposite — effects on human traits, revealing a hidden layer of genetic architecture that standard GWAS miss. 🔗 www.nature.com/articles/s41... Highlights below!
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Lili Milani @lilimilani.bsky.social · 03/07/2025
📢 (on more!) New study from our team in the Journal of Translational Medicine: Polygenic and pharmacogenomic contributions to medication dosing: a real-world longitudinal biobank study 🔗 tinyurl.com/25u3a5j7 (thread below) 👇
translational-medicine.biomedcentral.com
Polygenic and pharmacogenomic contributions to medication dosing: a real-world longitudinal biobank study - Journal of Translational Medicine
Background Understanding interindividual variability in medication dosing is central to precision medicine. Despite significant pharmacogenomic (PGx) insights into key biological pathways influencing ...
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Hanna Maria Kariis @hannamariakariis.bsky.social · 02/07/2025
🎉(1/4) Excited to share that our latest paper is now published! We investigated genetic factors linked to antidepressant side effects in 13,000 individuals from the @estbiobank.bsky.social , leveraging data from questionnaires and clinical notes using NLP. www.nature.com/articles/s41...
nature.com
Genetic influences on antidepressant side effects: a CYP2C19 gene variation and polygenic risk study in the Estonian Biobank - European Journal of Human Genetics
European Journal of Human Genetics - Genetic influences on antidepressant side effects: a CYP2C19 gene variation and polygenic risk study in the Estonian Biobank
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Tuuli Lappalainen @tuuliel.bsky.social · 05/05/2025
New preprint! My (now former) postdoc @kvastad.bsky.social led this integration of GWAS and spatial transcriptomics (ST) data to identify tissue structures with enrichment of disease-implicated genes = likely causal drivers of disease biology. www.biorxiv.org/content/10.1...
biorxiv.org
Spatial transcriptomics and genetically implicated genes identify putative causal tissue structures for complex traits
Spatially resolved transcriptomics is transforming our understanding of cellular and molecular diversity of tissues. Here, to identify tissue structures that are enriched for putatively causal disease...
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Eric Topol @erictopol.bsky.social · 16/04/2025
Our ability to predict a person's risk of heart disease keeps getting better, even among those previously considered at low risk by traditional clinical criteria @naturemedicine.bsky.social by my team @scripps.edu www.nature.com/articles/s41...
nature.com
Meta-prediction of coronary artery disease risk - Nature Medicine
A meta-prediction framework integrating polygenic risk scores spanning multiple conditions and nongenetic factors, such as laboratory tests and baseline diagnoses, had superior performance in predicti...
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Mike Inouye @mikeinouye.bsky.social · 09/04/2025
This study is a big deal. Is it going to be the one that kicks down the PRS door? Maybe. And that’s saying something. Assessment of a Polygenic Risk Score in Screening for Prostate Cancer www.nejm.org/doi/full/10....
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Lili Milani @lilimilani.bsky.social · 07/04/2025
Excited to share our recently published overview of the @estbiobank.bsky.social 🧬 We highlight the unique features of the biobank and the conducted scientific research it has enabled, including the many recall studies that have been carried out over the years! www.nature.com/articles/s41...
nature.com
The Estonian Biobank’s journey from biobanking to personalized medicine - Nature Communications
Large-scale biobanks have become a font of data that have led to discoveries across many fields of research. Here, the authors provide an overview of the Estonian Biobank, highlighting its value for r...
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Lili Milani @lilimilani.bsky.social · 04/04/2025
💡Can we use real world drug purchase data to study the genetics of medication dosing? We explored this by analyzing 20 years of digital drug dispensing data linked to the @ESTbiobank which hosts 212,000 genotyped participants. 🧵 📄 doi.org/10.1101/2025...
doi.org
Investigating the genetic factors of medication dosing using biobank-linked drug purchase data
Despite significant pharmacogenomic (PGx) insights into key biological pathways influencing drug response, the polygenic contribution to dose variability and the potential of electronic health records...
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npujol.bsky.social @npujol.bsky.social · 17/03/2025
📢 Excited to share our study in @natmedicine.bsky.social 👉 www.nature.com/articles/s41... We mapped & characterized genetic risk factors for 42 female reproductive health diagnoses. What we found & why it matters? 👇🧵
nature.com
Atlas of genetic and phenotypic associations across 42 female reproductive health diagnoses - Nature Medicine
This study provides a cross-trait atlas of genetic and phenotypic associations across 42 female reproductive health diagnoses.
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Eric Topol @erictopol.bsky.social · 27/02/2025
Nice roundup on CRISPR genome editing @economist.com www.economist.com/leaders/2025...
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Dr Gareth Hawkes @drghawkes.bsky.social · 26/02/2025
Really excited to share our next population-scale WGS work preprint. Here, we analyse three anthropometric traits in nearly 700,000 individuals (discovery UKB ~450K, replication AoU). We show, for these traits, that common and rare variant heritability is convergent www.biorxiv.org/content/10.1...
biorxiv.org
Whole-genome sequencing analysis of anthropometric traits in 672,976 individuals reveals convergence between rare and common genetic associations
Genetic association studies have mostly focussed on common variants from genotyping arrays or rare protein-coding variants from exome sequencing. Here, we used whole-genome sequence (WGS) data in 672,...
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Leopold Parts @leopoldparts.bsky.social · 31/01/2025
We're delighted to share our work on scrambling the human genome using prime editing, repetitive elements, and recombinases in @science.org , led by @jonaskoeppel.bsky.social , @f-raphael.bsky.social , with @proftomellis.bsky.social and George Church. www.science.org/doi/10.1126/...
science.org
Randomizing the human genome by engineering recombination between repeat elements
We lack tools to edit DNA sequences at scales necessary to study 99% of the human genome that is noncoding. To address this gap, we applied CRISPR prime editing to insert recombination handles into re...
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Gosia Trynka @gosiatrynka.bsky.social · 19/12/2024
🌟 Exciting news: The Leena Peltonen School of Human Genetics returns in 2025! This prestigious summer school brings together leaders in human genetics with PhD students 📅 July 27-31, 2025 📍 Wellcome Genome Campus, UK 📝 Apply by March 7 at www.lpshg.com
lpshg.com
LPSHG – Leena Peltonen Shool Of Human Genomics
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Lili Milani @lilimilani.bsky.social · 13/12/2024
This is what happens when you return research results to biobank participants: ✅ The 2nd most googled “How to…?” question in Estonia 2024: “How to become a biobank participant?” ✅ "Estonian Biobank" among Top 10 search terms. Huge thanks to the entire UniTartu & EstBB teams! ✨
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Michael Fischbach @mfgrp.bsky.social · 11/12/2024
Today we report that an engineered skin bacterium, swabbed gently on the head of a mouse, can unleash a potent antibody response against a pathogen. Could lead to topical vaccines that are applied in a cream. @djenetbousbaine.bsky.social led the charge... @natureportfolio.bsky.social 1/55
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Lili Milani @lilimilani.bsky.social · 11/12/2024
I'm very impressed by the thorough work @holtjma.bsky.social, @meberle.bsky.social and team have done in building #StarPhase - it really checks all the boxes for reliable calling of #pharmacogenomic star alleles, even for #CYP2D6! 🙌
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Robin Hofmeister @rjhfmstr.bsky.social · 06/12/2024
🚨 Our preprint on parent-of-origin effects (POEs) is out! With our novel method, we inferred the parental origin of alleles for >220,000 individuals, uncovering novel insights into genetics, evolution, and health. 👉 Read here: www.medrxiv.org/content/10.1... 👇 Highlights below!
medrxiv.org
Parent-of-Origin inference and its role in the genetic architecture of complex traits: evidence from ~220,000 individuals
Parent-of-origin effects (POEs) occur when the impact of a genetic variant depends on its parental origin. Traditionally linked to genomic imprinting, these effects are believed to have evolved from p...
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Ewan Birney @ewanbirney.bsky.social · 25/11/2024
Worth stressing that computers from across the world access EMBL-EBI 100 million times a day - sometimes for a tiny lookup, sometimes to download large amounts of public domain information about the world we live in. I am very proud to be part of the @ebi.embl.org community delivering on this
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Andrea Ganna @andganna.bsky.social · 20/11/2024
WHO just released the new principles for ethical collection and sharing of genomics data www.who.int/news/item/20...
who.int
WHO releases new principles for ethical human genomic data collection and sharing
The World Health Organization (WHO) has issued a set of principles for the ethical collection, access, use and sharing of human genomic data. Created with guidance from the WHO Technical Advisory Grou...
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