Sign in

John Burke

@jburkevic.bsky.social
255 followers 468 following 29 posts

Professor at the University of Victoria. Structural biologist studying phosphoinositides, membrane signalling, and nanobodies using HDX-MS, x-ray crystallography and cryo EM

PostsRepliesMedia
John Burke @jburkevic.bsky.social · 16/07/2026
Excited that the dual PI3K/mTOR inhibitor gedatolisib was approved in breast cancer. Always nice to see positive clinical results for molecules my lab has studied. It is interesting as it causes large scale conformational changes in PI3K elifesciences.org/articles/64691, www.rcsb.org/structure/7JWE
elifesciences.org
Disease-related mutations in PI3Kγ disrupt regulatory C-terminal dynamics and reveal a path to selective inhibitors
The c-terminus of PI3K plays a key role in regulating kinase activity, with c-terminal disease-linked mutations leading to either activation or inhibition, which reveal a path to specific inhibitors.
052
Reposted by John Burke
tafesselab.bsky.social @tafesselab.bsky.social · 09/07/2026
Excited to share our latest paper where we report an MR1-specific nanobody that blocks MR1-mediated T-cell activation. Congrats to Tim Bates, Corinna from David Lewinsohn’s lab, and thanks to @jburkevic.bsky.social for HDX-MS support! @ohsunews.bsky.social academic.oup.com/jimmunol/art...
academic.oup.com
An MR1-specific nanobody capable of blocking MR1T cell activation
Abstract. MR1 is a non-polymorphic, ubiquitously expressed, MHC class I-like antigen-presenting molecule that presents small-molecule metabolites to T cell
063
Reposted by John Burke
joe dobbs @joedobbs.bsky.social · 22/04/2026
Big news for correlative cryogenic SMLM/ET! With my colleague Soheil, we (Mahamid and @jonasries.bsky.social labs) indicate lamella-specific illumination can allow 500-1500x higher laser intensities, opening massive new possibilities for correlative imaging #teamtomo www.biorxiv.org/content/10.6...
15718
Reposted by John Burke
Kelly Nguyen @kellythd-nguyen.bsky.social · 26/03/2026
Proud to share the yeast telomerase structure, led by the talented @hongmiaohu.bsky.social in collaboration with the Wellinger and Chartrand labs. Discovered 37 years ago and took us nearly 7 years but totally worth the wait 😍. www.science.org/doi/10.1126/... www.youtube.com/watch?v=gFE4...
youtube.com
Cryo-EM structure of yeast telomerase
YouTube video by MRC Laboratory of Molecular Biology
920675
Reposted by John Burke
Henne lab @hennelab.bsky.social · 12/03/2026
I am so excited to co-organize the scientific program for ASBMB 2027 together with Amy Palmer @amypalmerzinc.bsky.social! Please join us in beautiful Boston April 3-6, 2027. Interested in organizing an ASBMB mini-symposia or workshop? Submit your proposals here!: www.asbmb.org/annual-meeti...
asbmb.org
Proposals
0105
Reposted by John Burke
Gerry Hammond @gerryhammond.bsky.social · 05/03/2026
Beautiful desert views. Beautiful membrane biology. Join us for the #FASEB Phospholipids in Aging and Disease SRC in Arizona, July 26–30 2026. Registration is now open! So much better than a Lipid Droplets conference. Also, we're co-located with FASEB Lipid Droplets 😜
events.faseb.org
Phospholipids in Aging and Disease.
Explore breakthroughs in phospholipid research, membrane biology, and aging at this leading scientific conference.
1156
Reposted by John Burke
Gerry Hammond @gerryhammond.bsky.social · 27/02/2026
A fascinating look at the frankly bonkers, still-mysterious relationship between master membrane regulator PIP2 and its precursor. Another classic from Min Wu's lab!
pnas.org
Distinct impact of PI(4)P flux on PI(4,5)P2 steady states and oscillations | PNAS
Plasma membrane (PM) phosphatidylinositol 4,5-bisphosphate [PI(4,5)P2] regulates indispensable processes such as exocytosis, endocytosis, and actin...
1217
Reposted by John Burke
tafesselab.bsky.social @tafesselab.bsky.social · 24/02/2026
Our paper on The Lipid Interactome is now published, and the database is open: lipidinteractome.org @ohsummi.bsky.social @ohsunews.bsky.social @nadlerlab.bsky.social @jeremybaskin.bsky.social Please RT to spread the word. doi.org/10.1093/bioi...
doi.org
The Lipid Interactome: an interactive and open access platform for exploring cellular lipid–protein interactions
AbstractSummary. Lipid–protein interactions play essential roles in cellular signaling and membrane dynamics, yet their systematic characterization has lon
13213
Reposted by John Burke
Philipp Niethammer @niethammerlab.bsky.social · 21/02/2026
Another interesting example of how cPLA2 senses nuclear deformation and controls immune cell behaviour. Since the enzyme adsorbs to hydrophobic lipid packing defects, membrane tension and high positive curvature can have similar effects as membrane tension. www.science.org/doi/10.1126/...
science.org
cPLA2α targeting to exosomes connects nuclear deformation to LTB4-signaling during neutrophil chemotaxis
Nuclear squeezing triggers lipid signals that help neutrophils stay on course through tight spaces.
153
Reposted by John Burke
Sjors Scheres @sjorsscheres.bsky.social · 16/02/2026
Please spread the word: the Structural Studies Division @mrclmb.bsky.social is looking for a new tenure-track, independent group leader with an exciting plan in any area of Structural (Molecular & Cell) biology, in discovery biology and/or methods development. 🥳 mrc.tal.net/vx/mobile-0/...
mrc.tal.net
Research Group Leader Tenure Track - Structural Studies - LMB 2775 - Medical Research Council
Location: Cambridge. Vacancy: Research Group Leader Tenure Track - Structural Studies - LMB 2775. Closing Date: 16/03/2026, 23:55
184106
Reposted by John Burke
Brett Collins @brettcollins.bsky.social · 28/01/2026
Do you want to know more about how Retromer regulates Rab7 activity in yeast? Of course you do. Check out the new collaboration with Andreas Mayer with work led by Catarina Alves and Kevin Chen.
biorxiv.org
The GTPase activating protein Gyp6 binds Retromer and inactivates Rab7/Ypt7 to coordinate the formation of endosomal carriers
The Retromer coat is conserved in all eukaryotes and is crucial for the correct intracellular sorting of many transmembrane receptors and lysosomal hydrolases. Retromer is an effector of the late endosomal small GTPase RAB7 and is also implicated in its inactivation required for proper endosomal maturation. Here, we explore the role of controlled GTP hydrolysis by the RAB7 ortholog Ypt7 in the formation of Retromer-coated membrane carriers in yeast. Proximity labelling and genetic ablation identify the GTPase Activating Protein (GAP) Gyp6 as a critical regulator of Ypt7 activity in the context or Retromer. Structural studies show that Retromer recruits Gyp6 through its Vps29 subunit, which recognises a specific PL motif and a secondary binding site in the C-terminal domain of Gyp6. This interaction does not occur with other yeast GAPs. Ablation of the Gyp6-Retromer interface or the catalytic activity of Gyp6 leads to the accumulation of tubular structures on endo-lysosomal compartments and to increased association of Ypt7 with Retromer and its cargo Vps10. These results support a model in which Gyp6 controls the switch from Ypt7-dependent Retromer coat assembly and cargo collection to the departure of the carrier through membrane fission and uncoating. ### Competing Interest Statement The authors have declared no competing interest. National Health and Medical Research Council, https://ror.org/011kf5r70, APP2016410 Swiss National Science Foundation, https://ror.org/00yjd3n13, 31003A_179306, 310030_204713, 10.006.083
02010
Reposted by John Burke
tafesselab.bsky.social @tafesselab.bsky.social · 12/01/2026
Excited to share our first collaborative paper of the year- a review on the emerging roles of lipids in flavivirus infection, now published in @cp-trendsmicrobiol.bsky.social. Congrats to Judah (postdoc) for spearheading the work! @ohsunews.bsky.social www.sciencedirect.com/science/arti...
195
John Burke @jburkevic.bsky.social · 10/12/2025
Have you ever thought about coming to Canada as a researcher? See new programs for established PIs to move to the great north. If you have any questions about possibilities at UVic let me know www.canada.ca/en/impact-pl...
canada.ca
The Government of Canada introduces new programs for international researchers - Canada.ca
010
Reposted by John Burke
Jean lab @jeanlab-uds.bsky.social · 28/11/2025
It is a nice way to end the week: our improved RAB GTPase BioID map now online! www.nature.com/articles/s42... We hope it will be useful to the community, and we're happy to share any reagents!
nature.com
A proximity map of RAB GTPases delineates roles for RAB14 in EARP complex and UHRF1BP1 endosomal recruitments
Communications Biology - Proximity labeling proteomics of RAB GTPases identifies an array of neighboring RAB proteins. Functional validation studies reveal links between RAB25 and DENND6A, or...
53710
Reposted by John Burke
Cell Biology J-Club @cellclub.bsky.social · 27/11/2025
www.science.org/doi/10.1126/...
science.org
Structural basis for the recruitment and selective phosphorylation of Akt by mTORC2
The mTOR protein kinase forms two multiprotein complexes, mTORC1 and mTORC2, that function in distinct signaling pathways. mTORC1 is regulated by nutrients, and mTORC2 is a central node in phosphoinos...
074
Reposted by John Burke
John Rubinstein @johnrubinstein.bsky.social · 27/11/2025
Exciting collab with Paul Palme, Peter Imming, & Adrian Richter! Guided by @courbongautier.bsky.social's structure of myco ATP synthase bound to a squaramide, they have made SQAs that are less toxic, more potent, more stable than AstraZeneca's SQ31f #MedChem #TB #NTM pubs.acs.org/doi/full/10....
pubs.acs.org
Design, Synthesis, and Biological Evaluation of Mono- and Diamino-Substituted Squaramide Derivatives as Potent Inhibitors of Mycobacterial Adenosine Triphosphate (ATP) Synthase
Amides of squaric acid are new drug candidates with activity against mycobacteria. Like the approved drug bedaquiline, these compounds achieve efficacy by inhibiting mycobacterial ATP synthase. Howeve...
13012
Reposted by John Burke
Abdou Rachid Thiam @abdourachidthiam.bsky.social · 27/11/2025
And the saga continues! Our collaborative work with outstanding Justin Korfhage & Thomas Melia’s lab in PNAS shows that ATG2A transfers triglycerides and does so bidirectionally! An exciting twist in our understanding of lipid transport. Definitely worth a deep read: www.pnas.org/doi/10.1073/...
pnas.org
ATG2 is a triglyceride transfer protein | PNAS
Bridge-like lipid transfer proteins (BLTPs) are established to function in phospholipid transport between bilayers at organelle–organelle contact s...
03118
Reposted by John Burke
bioRxivpreprint @biorxivpreprint.bsky.social · 18/11/2025
Chemical proteomics decrypts the kinases that shape the dynamic human phosphoproteome www.biorxiv.org/content/10.1101/202…
0148
John Burke @jburkevic.bsky.social · 05/11/2025
Cool new paper (www.jbc.org/article/S002... from my lab spearheaded by graduate students Sushant @sushantsuresh.bsky.social and Alex @alexlouiseshaw.bsky.social . This was a very cool collaboration with the Scott Hansen, Jennifer Cobb, Tamas Balla labs
jbc.org
2137
Reposted by John Burke
Jeremy Baskin @jeremybaskin.bsky.social · 07/10/2025
A while back we found that the lipid-binding protein PLEKHA4 boosts Wnt/β-catenin signaling and drives melanoma growth in vivo. Now, we (Nathan Frederick) identify small-molecule inhibitors of PLEKHA4 & related proteins with anticancer activity in vitro! pubs.acs.org/doi/10.1021/....
pubs.acs.org
Discovery, Optimization, and Anticancer Activity of Lipid-Competitive Pleckstrin Homology Domain-Containing Family A Inhibitors
Phosphoinositide signaling is a major cellular mechanism controlling cancer cell viability, proliferation, and survival. Yet, inhibition of lipid kinases that produce oncogenic phosphoinositides has afforded only a limited number of efficacious drugs attributed in large part to on-target toxicity resulting from the pleiotropic effects of these signaling lipids. Targeting the specific phosphoinositide effector pathways via competitive inhibitors of phosphoinositide-recognizing pleckstrin homology (PH) domains represents a relatively unexplored means to achieve greater specificity. Herein, we present the discovery from in silico screening, structure–activity relationship (SAR) optimization, and cellular characterization of novel phosphoinositide-competitive inhibitors of the pleckstrin homology domain-containing A (PLEKHA) family. These compounds induce cytotoxic effects in BRAF and NRAS mutant melanoma cells, consistent with on-target inhibition, and the most potent compound is activated by endogenous esterase activity, suggesting that prodrug esters represent a viable strategy for targeting the phosphoinositide-binding pockets of the PLEKHA family of PH domains.
0279
John Burke @jburkevic.bsky.social · 16/10/2025
Just spent an hour trying to get chatgpt to write a custom zotero script for me. Not super worried about AGI coming anytime soon...
000
John Burke @jburkevic.bsky.social · 09/10/2025
Great visit to the university of torino for a seminar, fun science and great food with good friends
020
John Burke @jburkevic.bsky.social · 10/09/2025
New review out from my lab on class I PI3Ks www.sciencedirect.com/science/arti..., was fun to write where we are and where we are going in PI3K research Great work from Isobel and Alex in my lab @alexlouiseshaw.bsky.social
sciencedirect.com
Molecular basis for regulation of the class I phosphoinositide 3-kinases (PI3Ks), and their targeting in human disease
The class I phosphoinositide 3-kinase pathway (PI3K) is a master regulator of cellular growth, and plays essential roles in controlling immune cell fu…
112
Reposted by John Burke
Gerry Hammond @gerryhammond.bsky.social · 10/09/2025
Announcing our new PA biosensor, PILS-Nir1 – seen here in HeLa cells during PLC activation #lipidtime #phospholipids Read the OA paper in JCB
1248
Reposted by John Burke
Gerry Hammond @gerryhammond.bsky.social · 22/08/2025
How do swelling lysosomes not burst? Because they literally suck more lipids into their membranes from the ER via this protein straw. Amazing piece of this particular molecular puzzle from my colleague jay tab!
0175
Reposted by John Burke
tafesselab.bsky.social @tafesselab.bsky.social · 12/08/2025
Have you published lipid-protein interactome data? Please let us know, we’d love to include it in the repository. The goal is to build a centralized hub for the scientific community. Huge thanks to Gaelen Guzman, a graduate student/postdoc in the lab who built it from scratch.
04216
Reposted by John Burke
Alexandria Shaw @alexlouiseshaw.bsky.social · 07/07/2025
New review out with @jburkevic.bsky.social! We highlight recent advances in our understanding of the role the phosphoinositide PIP3 plays in regulating the protein kinases Akt, PDK1, and BTK from a structural perspective. #kinase #phosphoinositides portlandpress.com/biochemsoctr...
portlandpress.com
Molecular insight on the role of the phosphoinositide PIP3 in regulating the protein kinases Akt, PDK1, and BTK
Protein kinases are master regulators of myriad processes in eukaryotic cells playing critical roles in growth, metabolism, cellular differentiation, and motility. A subclass of protein kinases is reg...
041
Reposted by John Burke
tafesselab.bsky.social @tafesselab.bsky.social · 19/06/2025
Excited to share our new preprint 🥳. We dev’ed a high-affinity nanobody that binds MR1 & blocks MR1-restricted T cell activation, a powerful tool to dissect MR1 biology in infection, inflammation & cancer. @jburkevic.bsky.social @ohsunews.bsky.social www.biorxiv.org/content/10.1...
183
Reposted by John Burke
Peter Mace @petermace.bsky.social · 17/06/2025
Check out the view today from the venue—scoping for the IUBMB Focussed meeting on (pseudo)kinases! Abstracts and early bird registrations closes this week! www.ivvy.com.au/event/IUBMB25/ @pseudokinase.bsky.social @iubmb.bsky.social
262
Reposted by John Burke
Peter Mace @petermace.bsky.social · 12/06/2025
Only one week left to submit your abstract and register at early bird rates for the IUBMB Focussed Meeting - (pseudo)kinases in signal transduction. Sign up and register by June 20!! Join @pseudokinase.bsky.social Natalia Jura, and a who's who of kinase research! www.ivvy.com.au/event/IUBMB25/
132
Reposted by John Burke
Gerry Hammond @gerryhammond.bsky.social · 12/04/2025
We have some #lipids talks at #asbmb25 on PI signaling that will blow your mind! Join us Sunday at 9 a.m. in room W179
This poster has the ASBMB logo and a molecular model of the cell, with the room number W179 and time, Sunday 9 am
072
Reposted by John Burke
Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 11/04/2025
SCAM ALERT. This is a fake conference that ripped off my and other people’s names to trick people into registering. There is no such conference that I or the others shown were invited or agreed to. We are working to try to get this fraud taken down from the web. chemsymposia.com
chemsymposia.com
Join Chemsymposia 2026: Research & Innovation | ChemSymposia 2026
Join us at Chemsymposia 2026 to discover groundbreaking research in physics applications. Connect with experts, engage in insightful discussions, and explore our venue, registration details, and speak...
8192108
John Burke @jburkevic.bsky.social · 03/04/2025
A really exciting new preprint out from the Jura and Verba labs looking at conformational dynamics of PI3K on membrane surfaces using cryo-EM. This is truly groundbreaking, and provides a ton of exciting insight into PI3K activation www.biorxiv.org/content/10.1...
biorxiv.org
Structures of the PI3Kα/KRas complex on lipid bilayers reveal the molecular mechanism of PI3Kα activation
PI3Kα is a potent oncogene that converts PIP2 to PIP3 at the plasma membrane upon activation by receptor tyrosine kinases and Ras GTPases. In the absence of any structures of activated PI3Kα, the mole...
021
John Burke @jburkevic.bsky.social · 31/03/2025
New work out from my lab by my graduate student Isobel in collaboration with Josh Pemberton and Tamas Balla. Provides some new cool tools to manipulate PI3,5P2 levels, as well as some new insight into PIKfyve regulation. rupress.org/jcb/article-...
rupress.org
An advanced toolset to manipulate and monitor subcellular phosphatidylinositol 3,5-bisphosphate
In this paper, Pemberton et al. describe the generation and characterization of an engineered active fragment of the PIKfyve enzyme and its use to generate
161
Reposted by John Burke
Peter Mace @petermace.bsky.social · 26/02/2025
Really exciting to share the peer-reviewed version of our study of the DET1 adaptor for the CUL4 Ub ligase. A cryptic E2-binding site and recruitment mechanism for COP1—another E3! www.science.org/doi/10.1126/...
science.org
DET1 dynamics underlie cooperative ubiquitination by CRL4DET1-COP1 complexes
A dynamic substrate adapter (DET1) recruits COP1 to Cullin ubiquitin ligase complexes assisted by a noncatalytic E2 enzyme.
151
Reposted by John Burke
Simon Cook @drsimoncook.bsky.social · 12/02/2025
I'm looking forward to this Signalling Symposium which celebrates the achievements of Len Stephens and Phill Hawkins during their 30-yr tenure at the Babraham Institute @babrahaminst.bsky.social Registration details below
074
Reposted by John Burke
Gerry Hammond @gerryhammond.bsky.social · 11/02/2025
The most frequently asked question we get: do #lipidtime genetically encoded lipid biosensors compete out cells’ native effector proteins? Victoria Holmes and Morgan Ricci led a paper in JCB that answers this question: rupress.org/jcb/article/... Read on for a brief thread.
rupress.org
Single-molecule lipid biosensors mitigate inhibition of endogenous effector proteins | Journal of Cell Biology | Rockefeller University Press
Holmes and colleagues show that AKT activation is blocked by commonly used PIP3 biosensors, but that this can be overcome by expressing biosensors at singl
175
Reposted by John Burke
Peter Mace @petermace.bsky.social · 29/01/2025
Exciting to open registration for the IUBMB Focussed Meeting on Emerging roles of (pseudo)kinases! Fantastic speakers in an unmatched location, lots of speaking slots available for ECRS. Interested in kinases or pseudokinases? We would love to see you in Queenstown! www.ivvy.com.au/event/IUBMB2...
Poster showing a kinase domain emerging from Lake Wakatipu, with a list of speakers
2119
John Burke @jburkevic.bsky.social · 21/12/2024
new paper using an optopharmacology approach to target the opioid receptor gpcr out in biorxiv today. This will be a perfect addition to the teaching of the gpcr section of my 4th year course. www.biorxiv.org/content/10.1... Fun fact I worked in Dirk Trauner’s lab during my senior year at Berkeley
biorxiv.org
An opioid efficacy switch for reversible optical control of peripheral analgesia
The mu-opioid receptor (MOR) is a major target for the treatment of pain. However, opioids are prone to side effects which limit their effectiveness as analgesics and can lead to opioid use disorders ...
120
John Burke @jburkevic.bsky.social · 20/12/2024
First post up, sharing some cool work from my lab by @alexlouiseshaw.bsky.social and @sushantsuresh.bsky.social out today in Science Advances (www.science.org/doi/10.1126/...)
science.org
Molecular basis for plasma membrane recruitment of PI4KA by EFR3
The structure of the EFR3A-PI4KA complex reveals insight into PI4KA membrane localization and its role in human disease.
291