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Edu Calpena

@educalpena.bsky.social
42 followers 67 following 0 posts

Miguel Servet fellow interested in rare genetic + genomic disorders | focused in the genetics of craniosynostosis @IISLaFe @CIBERER. Previously @universityofoxford.bsky.social @Wilkie_Lab

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José A. Plaza @plazabickle.bsky.social · 15/01/2025
Camino de Valencia. Mañana participo en una jornada muy chula sobre comunicación y divulgación científica: #CuentaCienciaIISLaFe. Con gente 🔝: @conchilillo.bsky.social. Kristin Suleng. Carlos Romá. @sergioefe.bsky.social. @bayesana.bsky.social. @raticosdeciencia.bsky.social. Qué ganas.
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Crump Lab @crumplab.bsky.social · 09/01/2025
The outer ear is a mammalian innovation but where did it come from? In our study in Nature, Mathi Thiruppathy and colleagues find that the outer ear arose from modification of an ancestral gill program first originating in marine invertebrates. www.nature.com/articles/s41... 1/n
nature.com
Repurposing of a gill gene regulatory program for outer ear evolution - Nature
Nature - Repurposing of a gill gene regulatory program for outer ear evolution
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Axel Visel @axelvisel.bsky.social · 12/01/2025
Evo-devo aficionados, don't miss this really cool paper by @mathithiru.bsky.social, @crumplab.bsky.social et al. Development of the mammalian outer ear and fish gills share regulatory programs (with cross-compatible enhancers!), suggesting a common evolutionary origin of these structures.
"They are the same picture" meme inspired by The Office. In the meme, Pam is shown two images: one depicting the development of fish gills and the other showing the development of the human ear. The developmental structures in both images are color-coded to emphasize the shared evolutionary origins of fish gill elements and the human outer ear canal. When asked, "Corporate needs you to find the difference between this structure and this structure," Pam responds with a variation of the iconic line, "They're the same structure."
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Jorge Ferrer @jorge-ferrer.bsky.social · 31/12/2024
📣 Hiring, please forward widely!! Two postdoc openings to work on genomics of diabetes 1. Computational regulatory genomics/statistical genetics. 2. Experimental cell-based modeling DM if interested @crg.eu shorturl.at/O3wMi shorturl.at/ieyZy
shorturl.at
Postdoctoral scientist, gene regulatory mechanisms and diabetes | CRG Online Recruitment Portal
The Centre for Genomic Regulation (CRG) is an international biomedical research institute of excellence, based in Barcelona, Spain, with more than 400 scientists from 44 countries. The CRG is composed by an interdisciplinary, motivated and creative scientific team which is supported both by a flexible and efficient administration and by high-end and innovative technologies.
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Evgeny Kvon @evgenykvon.bsky.social · 06/01/2025
How to test the functional impact of non-coding variants in vivo? We developed a new method called dual-enSERT, which can quantitatively compare the effects of enhancer variants in live mouse embryos in under two weeks. www.nature.com/articles/s41... 1/n
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Lluis Montoliu @lluismontoliu.bsky.social · 26/12/2024
Con relación a este nuevo proyecto 2025-2028 nuestro laboratorio del CNB del @csic.es busca candidatos/as graduados/as con máster para realizar una tesis doctoral con una contrato de cuatro años. Interesados/as escribidme por email con vuestro CV y expediente académico.
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Axel Visel @axelvisel.bsky.social · 17/12/2024
How do 250k regulatory sequences coordinate 15k genes in mammalian development? Just out: A genomic evidence board to decode the chaos by mapping enhancer-gene interactions across embryonic mouse tissues New resource with Miao Yu, Ming Hu, Bing Ren, and more. www.nature.com/articles/s41...
A modified version of the "Pepe Silvia" meme from It's Always Sunny in Philadelphia. A frantic man points at a chaotic evidence board covered with a sketch of a mouse embryo,  enhancers, and a gene, connected with tangled lines. He looks intense, as if he's trying to explain a complex, interconnected system. He says "Listen, listen. You don't understand! Those enhancers are everywhere! It's all connected!"
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Crump Lab @crumplab.bsky.social · 13/12/2024
How can some vertebrates naturally recover from deafness? In work in PNAS, Tuo Shi finds that enhancers for sensory genes remain open but silent in sister cells of zebrafish and lizards, allowing these to make new inner ear sensory hair cells upon damage. www.pnas.org/doi/10.1073/...
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European Society of Human Genetics @eshg.bsky.social · 20/12/2024
Announcing new free ESHG webinar series! 🗓️ Last Wednesday of each month 📅 First episode: Feb 26, 2025 (16:00 CET) 🎤 Speaker: Malte Spielmann 💡 Topic: "The Dark Side of the #Genome: Challenges & Opportunities in the Post-Genomic Era" 🔗 Register now: wma.eventsair.com/eshg-webinar...
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Brotman Baty Institute @brotmanbaty.bsky.social · 17/12/2024
A dozen experts on computational biology to bioengineering to AI have been confirmed for the Eighth Annual Mutational Scanning Symposium, May 21st through 23rd in Barcelona, Spain. Registration opens January 20. Learn more: brotmanbaty.org/news/mss-202... @varianteffect.bsky.social
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Elzo de Wit lab @ NKI @dewitlab.bsky.social · 20/12/2024
Please check out our new paper showing that the supposed looping factor ZNF143 has no role in chromatin looping: www.cell.com/molecular-ce... And also check out the companion paper from @andersshansen.bsky.social: www.cell.com/molecular-ce...
cell.com
ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF
ZNF143 has been implicated in gene activation and chromatin looping. Magnitov et al. show that ZNF143 has no general looping factor activity and explain why this function has been misattributed. Instead, ZNF143 regulates transcription of nuclear-encoded mitochondrial genes, ensuring energy homeostasis, proliferation, and differentiation potential of stem cells.
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Titia Sixma @titiasixma.bsky.social · 16/12/2024
We have an opening for a PhD student, for a cryo-EM/biochemistry project at the interface of ubiquitin and DNA repair. Enthousiasm and experience with protein biochemistry and/or structural biology really important. Recruitment will fall under the the NKI PhD program, please see below
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Inês Barroso @inesbarroso.bsky.social · 16/12/2024
jobs.exeter.ac.uk/hrpr_webrecr... Interested in data management? Want a permanent position working in beautiful Devon and work collaboratively to support the work of lots of genomics team? Apply!!
jobs.exeter.ac.uk
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Daniel Ibrahim @danielibrahim.bsky.social · 28/11/2024
🔺🔺🔺RED TRIANGLE ALERT 🔺🔺🔺 Ever wonder how #TADs compare across the tree of life?Look no further & read our Review!!! Find out what genes & 3D chromatin can & can't do in Bacteria! Archeae! Yeast! Plants! Animals! SMCs & RNA-Pol are the only thing they have in common www.nature.com/articles/s41...
nature.com
Evolution and function of chromatin domains across the tree of life - Nature Structural & Molecular Biology
Szalay et al. discuss cross-kingdom similarities and differences in 3D chromatin folding in relation to gene regulation, including in bacteria, archaea, mammals and plants. This comparison reveals cer...
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Christa Buecker @chribue.bsky.social · 02/12/2024
By definition, enhancers can activate from a distance. But with increased distance between enhancer and promoter, the activation drops. To study this systematically, we build a synthetic locus: www.cell.com/molecular-ce... 1/12
doi.org
Redirecting
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Jess Kelley @jesskelley.bsky.social · 26/11/2024
Very excited that our paper describing a critical role for the PNUTS-PP1 phosphatase complex in transcription pause release is up online! This was a massive team effort with @edimitrova.bsky.social and the rest of the @robklose.bsky.social lab www.cell.com/molecular-ce... A short thread: (1/8)
cell.com
The PNUTS phosphatase complex controls transcription pause release
Kelley et al. discover that the PNUTS phosphatase complex plays an essential role in gene transcription by controlling RNA polymerase II pause release. PNUTS achieves this through its TND, which recog...
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Nicky Whiffin @nickywhiffin.bsky.social · 22/11/2024
Honoured to be recognised by @gensocuk.bsky.social and humbled to be named alongside so many incredible geneticists 🤯🧬 But science is a team sport: this is really down to, and for, my absolutely incredible team who inspire, drive, and motivate me every day 🌟 #teamWork #youGuysRock 1/2
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Emilia Dimitrova @edimitrova.bsky.social · 25/11/2024
The final countdown 😀
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Jalees Rehman @jalees.bsky.social · 19/11/2024
Droplet Hi-C enables scalable, single-cell profiling of chromatin architecture in heterogeneous tissues www.nature.com/articles/s41...
nature.com
Droplet Hi-C enables scalable, single-cell profiling of chromatin architecture in heterogeneous tissues - Nature Biotechnology
Chromatin organization is measured in single cells using droplet microfluidics.
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IRB Barcelona @irbbarcelona.org · 20/11/2024
🚀 Ready to immerse yourself in a world-class research environment? ✨Take the first step towards your dream career with the #IRBTarget #PhD program. Your future in science starts here! Apply now! ➡️bit.ly/4fPW5Rj @batllelab.bsky.social @milanlab.bsky.social @alejofraticelli.bsky.social
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Hilary Martin @hilarycmartin.bsky.social · 20/11/2024
My group's work dissecting the contribution of common variants to rare neurodevelopmental conditions is now out at nature.com/articles/s41..., led by co-first authors Qinqin Huang (not yet on blue sky) and @emiliewigdor.bsky.social . See below for Emilie's tweetorial.
nature.com
Examining the role of common variants in rare neurodevelopmental conditions - Nature
Patients with neurodevelopmental conditions without a monogenic diagnosis have a higher polygenic burden than those with a monogenic diagnosis. Non-transmitted common all...
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