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Dipa Sashital

@dsashital.bsky.social
428 followers 195 following 13 posts

Professor of Biochemistry at Iowa State University. Exploring CRISPR biology, mechanisms and structures

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Reposted by Dipa Sashital
Swiss National Science Foundation (SNSF) @snsf.ch · 22/09/2026
🏆 Biochemist Martin Jinek is the winner of the Swiss Science Prize #MarcelBenoist 2026, considered the Swiss #Nobel Prize. He contributed to the development of molecular scissors, namely CRISPR-Cas9 technology. Read more ➡️ sohub.io/3hs4
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Inga Songailiene @ingasongailiene.bsky.social · 03/09/2026
Happy to share our review article on CRISPR-Cas spacer aquistion "Building CRISPR immunity: evolution and mechanisms of spacer acquisition". 🎏 It was a great pleasure to contribute to it! www.sciencedirect.com/science/arti...
sciencedirect.com
Building CRISPR immunity: evolution and mechanisms of spacer acquisition
CRISPR–Cas systems in prokaryotes serve as adaptive immune systems that neutralize phage infections through RNA-guided nucleases. Immunization is achi…
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Sternberg Lab @sternberglab.bsky.social · 09/07/2026
1/11 New preprint from the Sternberg lab in collaboration with the Fernández lab! We are excited to share our structure-function study of DRT10, a bacterial defense-associated reverse transcriptase that synthesizes long tandem-repeat DNA.🧵 Read the full story here: www.biorxiv.org/content/10.6...
biorxiv.org
Mechanism of tandem-repeat DNA synthesis by an antiviral reverse transcriptase
Defense-associated reverse transcriptases (DRTs) employ DNA synthesis to protect bacteria against phage infection[1][1],[2][2]. We previously showed that DRT10, a tripartite system comprising an RT, a...
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Dipa Sashital @dsashital.bsky.social · 05/07/2026
Beautiful work (and beautiful figures!) from Sashital lab alum @yuktidhingra.bsky.social! Congrats, and looking forward to seeing more exciting RNAP work in the future!
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Yukti Dhingra @yuktidhingra.bsky.social · 05/07/2026
Happy to share the first paper from my postdoc in the Darst and Campbell labs! 🧵 www.pnas.org/doi/full/10.... We used cryo-EM and allosteric inhibitors as mechanistic probes to visualize conformational landscapes of E. coli and M. tuberculosis RNA polymerases during nucleotide addition. 1/4
pnas.org
RNA polymerase inhibitors reveal active-site motions essential for the nucleotide addition cycle | PNAS
The nucleotide addition cycle (NAC) of multisubunit DNA-dependent RNA polymerases (RNAPs) involves coordinated conformational changes in conserved ...
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Amy Weeks @amyweeks.bsky.social · 12/06/2026
Now online @pnas.org: We developed a simple, scalable, and accessible platform for deep profiling of phosphoeraser specificity using human phosphoproteome-derived peptide libraries (PhosPropels!) 🧪👩‍🔬https://www.pnas.org/doi/10.1073/pnas.2523183123
pnas.org
Phosphoproteome-derived peptide libraries for deep specificity profiling of phosphatases and phospholyases | PNAS
Protein phosphorylation is dynamically regulated by the opposing activities of phosphowriter enzymes (kinases) and phosphoeraser enzymes (phosphata...
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Aaron and the Hoskins Lab at UW Madison @uwmadisonrna.bsky.social · 17/05/2026
Le Tour de RNA was an awesome success! Thanks to everyone who helped us celebrate Sam, RNA, and NMR!
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Dipa Sashital @dsashital.bsky.social · 08/05/2026
Thanks for visiting and sharing your amazing science with us! I'll always have a place in my heart for U2-U6, even if we mostly talked about DNA
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Erik Sontheimer 🇺🇸💙🇺🇦 @eriksontheimer.bsky.social · 29/04/2026
Site-specific, multi-kilobase insertions and over-writes in mammalian cells, without DSBs, HDR, recombinases, integrases, transposases, or active cell cycling? Using fully or predominantly single-stranded DNA donors? 1/15
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Amy Weeks @amyweeks.bsky.social · 28/04/2026
Excited that our paper on enzymatic bromination of peptides is now online at ACS Chemical Biology! Led by Haley Bridge, we showed that the flavin-dependent halogenase RebH and its variants can be used for late-stage chemoenzymatic diversification of bioactive peptides: pubs.acs.org/doi/10.1021/...
pubs.acs.org
Enzymatic Bromination of Native Peptides for Late-Stage Structural Diversification via Suzuki–Miyaura Coupling
Flavin-dependent halogenases (FDHs) provide a biocatalytic approach for the site-selective halogenation of aromatic compounds, but their use in late-stage functionalization of peptides has remained li...
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Quentin Smith @qmsmith.bsky.social · 25/03/2026
1/11 In our story out today in @nature.com , we showcase the molecular mechanisms that enable Cas9 to bind and cleave negatively supercoiled ((-)SC) off-targets! 🧬🧵 🔗 www.nature.com/articles/s41... #CRISPR #Cas9 #DNATopology #AFM #CryoEM #SingleMolecule #Biophysics
nature.com
Structural basis of supercoiling-induced CRISPR–Cas9 off-target activity - Nature
Cas9 structures explain topology sensing and off-target activation.
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DTaylor Lab @davidwtaylorjr.bsky.social · 21/03/2026
Check out our the structure of a DNA-guided Cas12a. It uses the DNA hairpin to mimic structural cues to recognize a target RNA. Gnarly. www.biorxiv.org/content/10.6...
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Sternberg Lab @sternberglab.bsky.social · 04/03/2026
Out now! In collaboration with Leifu Chang, we uncover the molecular and structural underpinnings of CRISPR-Cas12f-like RNA-guided transcription systems! Links to the published articles: tinyurl.com/55kpavet tinyurl.com/sk6djwx3 Previous thread for the preprint: bsky.app/profile/did:...
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CRISPR 2026 @crisprmeeting.bsky.social · 01/03/2026
Early registration for the CRISPR 2026 meeting is extended until March 15, 2026. The Abstract deadline is March 31, 2026. Registration is required before submitting an abstract. web.cvent.com/event/ac20b6...
web.cvent.com
Summary - CRISPR2026
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CRISPR 2026 @crisprmeeting.bsky.social · 17/01/2026
Save the date! The CRISPR 2026 meeting will be held June 10 - 12 at Yale University, New Haven, Connecticut, USA. Abstract submissions will be opened on February 1st. Spread the word.
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Jason Cantor @jasonrcantor.bsky.social · 16/01/2026
For ~century, we’ve asked: why do proliferating cells ferment glucose even when O2 is around? I’m thrilled to share our latest work @natmetabolism.nature.com, led by @thebiokimist.bsky.social. By leveraging conditional essentiality in HPLM, we propose a provocative new answer to this classic Q. 🧵
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Amy Weeks @amyweeks.bsky.social · 21/12/2025
New preprint! We found that the flavin-dependent halogenase RebH catalyzes sequence-tolerant Trp bromination in peptides 🧪https://www.biorxiv.org/content/10.64898/2025.12.17.694899v1
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Ross Wilson @rosswilsonlab.org · 02/12/2025
Big news! Our team developed Neuro-PERC, a non-viral CRISPR delivery platform for genome editing of the brain. In our new preprint - bit.ly/NeuroPERC_pre - we report efficient editing in multiple models & species, including field-first results in large animals (pigs) 🧵👇
bit.ly
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Scott Coyle @cellraiser.bsky.social · 18/11/2025
How do cells adapt morphology to function? In a 🔥 preprint by @zjmaggiexu.bsky.social , with @dudinlab.bsky.social and @amyweeks.bsky.social , we identify a self-organizing single-cell morphology circuit that optimizes the feeding trap structure of the suctorian P. collini. 🧵 tinyurl.com/4k8nv926
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Peter Fineran @peterfineran.bsky.social · 18/08/2025
Ever wondered why some bacteria have multiple CRISPR-Cas systems? Our new study led by Leah Smith shows how type I CRISPR systems can promote the acquisition and retention of new spacers into a co-occuring type III system. www.sciencedirect.com/science/arti...
sciencedirect.com
Type I CRISPR-Cas immunity primes type III spacer acquisition
CRISPR-Cas systems are diverse, with microbes harboring multiple classes and subtypes. Type I DNA-targeting and type III RNA-targeting systems often c…
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Amy Weeks @amyweeks.bsky.social · 13/08/2025
New preprint: we developed a method that uses phosphoproteome-derived peptide libraries (PhosPropels) for deep specificity profiling of phosphatases and phospholyases www.biorxiv.org/content/10.1...
Position-specific frequency matrices can be used to calculate z-scores comparing enzyme-treated and control samples. The z-scores are plotted as heatmaps that represent an enzyme specificity profile.
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Artem Nemudryi @artemnemudryi.bsky.social · 25/07/2025
First preprint from the Nemudryi Lab! 🍾 In this work, we link antiviral immunity in bacteria and humans by showing that homologs of human Schlafen nucleases protect bacteria from phages. www.biorxiv.org/content/10.1...
biorxiv.org
Bacterial Schlafens mediate anti-phage defense
Human Schlafen proteins restrict viral replication by cleaving tRNA, thereby suppressing protein synthesis. Although the ribonuclease domain of Schlafen proteins is conserved across all domains of lif...
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Peter Fineran @peterfineran.bsky.social · 11/04/2025
Was my pleasure to chair the #crispr2025 meeting earlier this year in my hometown in NZ @crisprmeeting.bsky.social
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Joe Bondy-Denomy @jbdsf.bsky.social · 03/04/2025
Interested in phage defenses that natively block lytic phage used in therapies? Or do you want to figure out if a phage has a modified genome? Meet the END-nucleases, an enzyme family that can broadly restrict phages with many diverse modifications. From talented post-doc Wearn-Xin Yee!
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Jerrin Thomas George @jerrintgeorge.bsky.social · 27/03/2025
I am super excited to share our work uncovering the structure and mechanism of an ATPase-associated reverse transcriptase (RT) involved in prokaryotic antiviral defense, now available as a preprint on bioRxiv!🧬🦠🔬 www.biorxiv.org/content/10.1... 🧵👇
biorxiv.org
Structural basis of antiphage defense by an ATPase-associated reverse transcriptase
Reverse transcriptases (RTs) have well-established roles in the replication and spread of retroviruses and retrotransposons. However, recent evidence suggests that RTs have been conscripted by cells f...
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Sternberg Lab @sternberglab.bsky.social · 26/03/2025
Hello BlueSky! Inaugural post here from the Sternberg Lab. We're excited to share our latest work, in which we teamed up with the @WiedenheftLab to study how DRT9 reverse transcriptases provide antiviral immunity. Here’s what we found: www.biorxiv.org/content/10.1...
biorxiv.org
Protein-primed DNA homopolymer synthesis by an antiviral reverse transcriptase
Bacteria defend themselves from viral predation using diverse immune systems, many of which sense and target foreign DNA for degradation. Defense-associated reverse transcriptase (DRT) systems provide...
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Amy Weeks @amyweeks.bsky.social · 14/03/2025
My contribution to the Science Homecoming project--I wrote to The Item in Clinton, MA about the impacts that cuts to science funding will have on our health, our economy, and the opportunities available to young people in Clinton www.clintonitem.com/writes-cuts-... @sciencehomecoming.bsky.social
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Scott Coyle @cellraiser.bsky.social · 04/03/2025
Finally, in these tough times for science I want to emphasize how this work was supported at every level by NIH: through grants to my lab (DP2); to my students (BTP T32; CBI T32); and from Rohith’s experience as an NIH Postbac in the Tjandra lab. Grateful for the support that made this possible.
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Scott Coyle @cellraiser.bsky.social · 04/03/2025
Excited to share a new preprint! Wireless devices use FM modulation to transmit multiplexed noise-resistant data. Led by @born2raisecell.bsky.social, we create a biochemical analogue of this paradigm using genetically encoded oscillators (GEOs) for single-cell FM streaming tinyurl.com/nbs8rw42 🧵
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 27/12/2024
CRISPR-Cas supervises diverse anti-phage defense systems www.biorxiv.org/content/10.1101/202…
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Anne Chevallereau @annechevallereau.bsky.social · 22/12/2024
Finishing the year with a paper submission always feels good! 🛡 🦠 (1/5) www.biorxiv.org/content/10.1... Happy holidays everyone! ⭐️🎄
biorxiv.org
Systematic functional assessment of antiphage systems in their native host
Bacterial resistance to bacteriophages (phages) relies on two primary strategies: preventing phage attachment and blocking post-attachment steps. These latter mechanisms are mediated by defence system...
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Nora Pyenson @norapyenson.bsky.social · 12/12/2024
Is it “winner-takes all” when the simplest living things compete? Check out my fresh publication on phage coexistence in Science and a thread below🧵 www.science.org/doi/10.1126/...
science.org
Diverse phage communities are maintained stably on a clonal bacterial host
Bacteriophages are the most abundant and phylogenetically diverse biological entities on Earth, yet the ecological mechanisms that sustain this extraordinary diversity remain unclear. In this study, w...
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CRISPR 2026 @crisprmeeting.bsky.social · 09/12/2024
If you were on the fence about coming to CRISPR 2025 let us add that Christchurch airport is well connected internationally and from there you can explore many grand sights in the South Island, NZ. Register now and book a conference trip to NZ hashtag#CRISPR2025 lnkd.in/gaSkt-Ng
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Amy Weeks @amyweeks.bsky.social · 11/12/2024
Happy Holidays from the Weeks lab! This year's ornament is a working ferris wheel 🎡☃️
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CRISPR 2026 @crisprmeeting.bsky.social · 09/12/2024
Meet one of our speakers: Elizabeth Kellogg is an assistant professor in the department of Molecular Biology and Genetics at Cornell. There's still time to register and get to hear Elizabeth speak at CRISPR 2025 in Ōtautahi, Christchurch, NZ. lnkd.in/gds9sURN
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Olivier Duss @olivierduss.bsky.social · 04/12/2024
First paper of our lab today @natureportfolio.bsky.social by Nussi! We provide a real-time movie on how #transcription and #translation cooperate using #single-molecule FM: we find long-range #ribosome/ RNAP communication mediated by #RNA looping! @embl.org #RNAbiology #RNASky t.co/a24Xxcxdo0
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Naama Aviram @naamaaviram.bsky.social · 04/12/2024
It’s a wrap! The final version of our paper is out 🎉 where we characterize the multifaceted response of the transcript-activated type III CRISPR-Cas immunity. Here’s a skytorial (bluetorial?) by my awesome co-lead @akshilton.bsky.social #RNA #RNAsky #WomenInSTEM
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CRISPR 2026 @crisprmeeting.bsky.social · 03/12/2024
Rumour is there are cheaps flights from North America to NZ at the moment 👀✈️- get in quick and book your flights now for CRISPR 2025. Registrations are still open and we would love to see you. The airport is just a short trip to the city! crispr2025.org/registration
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Di Jiang @dijiang319.bsky.social · 29/11/2024
This week in @science.org Molecular basis of #mRNA delivery to the bacterial #ribosome www.science.org/doi/10.1126/...
science.org
Molecular basis of mRNA delivery to the bacterial ribosome
Protein synthesis begins with the formation of a ribosome-messenger RNA (mRNA) complex. In bacteria, the small ribosomal subunit (30S) is recruited to many mRNAs through base pairing with the Shine-Da...
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Di Jiang @dijiang319.bsky.social · 29/11/2024
I have registered to attend #CRISPR 2025. If you are going, I look forward to meeting there www.crispr2025.org
crispr2025.org
CRISPR 2025 Conference, , Christchurch New Zealand
We are excited to welcome you to Ōtautahi Christchurch, New Zealand for the CRISPR 2025 Conference. For the very first time, the annual CRISPR meeting is venturing into the Southern Hemisphere, making...
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Kaitlyn Kiernan @kaitlynakiernan.bsky.social · 28/11/2024
Very excited to share the first story from my postdoc where we uncover the structural basis for slow Cas9 turnover! We use kinetics-guided cryo-EM to capture 25 conformational states of SpCas9 from a single dataset - including the first look at Cas9 releasing product. biorxiv.org/content/10.1...
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Aaron and the Hoskins Lab at UW Madison @uwmadisonrna.bsky.social · 25/11/2024
Awesome new work from Sam Butcher's lab--including a 1 angstrom structure of a new pUG RNA! Self-assembly and condensation of intermolecular poly(UG) RNA quadruplexes academic.oup.com/nar/article/...
academic.oup.com
Self-assembly and condensation of intermolecular poly(UG) RNA quadruplexes
Abstract. Poly(UG) or ‘pUG’ dinucleotide repeats are highly abundant sequences in eukaryotic RNAs. In Caenorhabditis elegans, pUGs are added to RNA 3′ ends
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Justin Walley @justinwwalley.bsky.social · 21/11/2024
Awesome talk by @amyweeks.bsky.social whose lab is engineering so many cool proteomics tools for studying proteolysis and other PTMs
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Justin Walley @justinwwalley.bsky.social · 21/11/2024
Our Arabidizzle ubiquitinome paper is published! Awesome collaboration w @diorkelley.bsky.social lab lead by Gaoyuan Song - key contributions from so many others (@dormichicken.bsky.social @nmclark2.bsky.social) @theplantcell.bsky.social #proteomics #PlantScience academic.oup.com/plcell/advan...
academic.oup.com
Quantitative proteomics reveals extensive lysine ubiquitination and transcription factor stability states in Arabidopsis
An antibody-based approach to enrich ubiquitinated peptides reveals Arabidopsis root, seedling, and leaf ubiquitinomes.
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Dipa Sashital @dsashital.bsky.social · 20/11/2024
Hi again Bluesky! You still have a few days to register for the #CRISPR2025 conference at the discounted early bird price! While you're at it, book your plane tickets to New Zealand! We bought ours today and got a great price!
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Yamuna Krishnan @krishnanyamuna.bsky.social · 16/10/2023
Raphael Rodriguez and I wrote this historical perspective on Next Generation Sequencing by synthesis, because we were both postdocs in Shankar’s lab during the time it was being developed at Solexa…. 1/n🧵 www.nature.com/articles/s41...
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John Doench @johndoench.bsky.social · 15/11/2024
Happy Friday! New preprint to discuss, led by @ekaplan.bsky.social, entitled "Activity-based selection for enhanced base editor mutational scanning" www.biorxiv.org/content/10.1... A thread...
biorxiv.org
Activity-based selection for enhanced base editor mutational scanning
Base editing is a CRISPR-based technology that enables high-throughput, nucleotide-level functional interrogation of the genome, which is essential for understanding the genetic basis of human disease...
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Katie Berry @katieberry.bsky.social · 13/11/2024
Where are my bacterial (and archaea!) #RNAsky peeps? Mark your calendars for Sept 1-4 next year for the Microbial RNA meeting in Strasbourg. It’s my absolute favorite conference, so an ideal place to be an invited speaker for the first time :) Hope to see lots of folks there! microbialrnameeting.com
microbialrnameeting.com
Microbes & RNA 2025 – 8th Meeting on Regulating with RNA in Bacteria and Archaea
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