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David A. Salamanca-Díaz

@drsalamander.bsky.social
366 followers 874 following 4 posts

From 🇨🇴 to 🇩🇪 to 🇦🇹 to 🇬🇧 and again to 🇩🇪 #EvoDevo PostDoc in the Jackson Lab 🐌🪼🪱 etc. Single-cell-omics & other-omics Views are only my own #embryo2019 Github: dasalam42 Mastodon: @drsalamander@genomic.social evobioseries.com/#episode-14

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Reposted by David A. Salamanca-Díaz
Jessica Goodheart @mollusksatamnh.bsky.social · 11/09/2026
The Goodheart Lab is seeking a full-time Postdoctoral Fellow on an NSF-funded project to study the process of kleptocnidy, the theft and storage of nematocysts, in nudibranch mollusks. Project link: www.nsf.gov/awardsearch/...). Application here: careers.amnh.org/postings/4908.
nsf.gov
Award Details - NSF Award Search
Find award details and explore award abstracts and publications.
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Caxela @caxela.bsky.social · 08/09/2026
Homology
Digital drawing. A burst of hands/forelimbs of a variety of terrestrial vertebrates emerges from the fin of a mostly unseen fishapod in the bottom left corner. The forelimbs gradually point more towards the upper left corner as you move up through the bunch.
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Javier del Campo @fonamental.bsky.social · 01/09/2026
Coral bleaching looks like a reef-scale catastrophe. But it starts as a breakdown between single cells. Published in @microbiomej.bsky.social, led by @ambonacolta.bsky.social we watched it at that scale for the first time: the first single-cell transcriptomics of a bleaching coral 🪸 #CoralReefs
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Max Farnworth @maxfarnworth.bsky.social · 31/08/2026
🚨 I AM HIRING a 3-year postdoc & 4-year PhD student 🚨 [PLEASE SHARE WIDELY] My Emmy Noether @dfg.de funded Neural Circuit & Systems Evolution lab (🌟) at the @unimainz.bsky.socialÍ wants to start existing. So..., what do we need? WELL... we need you! APPLY UNTIL 21 SEPTEMBER.
static.klipy.com
ALT:
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Science Magazine @science.org · 31/08/2026
This is what a Jurassic forest may have sounded like. By combining exquisitely preserved fossil wings with experiments on living insects, computer simulations, and machine learning, scientists have re-created what they say is a partial Middle Jurassic soundscape. scim.ag/4cirWKy
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PLOS Biology @plosbiology.org · 17/08/2026
Medusozoan #cnidarians include asexual sessile polyp & sexual motile #medusa #jellyfish in their life cycle. A #medusozoan single cell transcriptome atlas by Oliver Link, @alisongcole.bsky.social @ulrichtechnau.bsky.social &co reveals medusa-specific cell state @plosbiology.org 🧪 plos.io/4qlYngI
A moon jellyfish Aurelia coerulea photographed at the “Zoo Schönbrunn” in Vienna (Austria) – Photo by Oliver Link, Culture by Roland Halbauer.
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Luis Alberto Bezares Calderón @lbezarescalderon.bsky.social · 16/08/2026
Our team is recruiting a PhD student to investigate the evolution of pressure sensation in Zooplankton! The project will use marine invertebrate larvae to explore the molecular, cellular, and neuronal mechanisms behind this fascinating sensory system. More details here: bit.ly/3TTeF4Q
bit.ly
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Alex de Mendoza @alexdemendoza.bsky.social · 03/08/2026
Sailing in @biorxivpreprint.bsky.social ready for summer, our study on the iconic Portuguese man o' war 🪼 is out: www.biorxiv.org/content/10.6.... We use (epi)genomics to understand a critter that fascinates me since childhood. Massive team effort with @obog.bsky.social, Cummins and Neely groups. 🧵
the indo-pacific bluebottle (Physalia utriculus)
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RobertoFeuda @robertofeuda.bsky.social · 30/07/2026
We're hiring 4 postdocs at @unibo.it to study nervous system evolution. Seeking expertise in single-cell genomics, molecular or developmental biology in ctenophores, cnidarians, echinoderms, flies or human stem cells. 2+2 yrs contract. Deadline: 26 Aug. Please share! bandi.unibo.it/s/apos7/proc...
bandi.unibo.it
Procedura di valutazione comparativa per titoli e colloquio per il conferimento di n. 4 contratti di ricerca presso il Dipartimento di Scienze Biologiche, Geologiche e Ambientali - SSD BIOS-04/A - GSD...
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Vicky & The Sleight Lab @vs-marine.bsky.social · 27/07/2026
Please share, I am hiring an evo devo postdoctoral research fellow! 📍: The Sleight Lab, University of Aberdeen, Scotland (5th oldest University in UK & English-speaking world) 📅: start after 1st December 2026 🐌: Evolution and Development (molluscs) ⌛: 3 year contract sleightlab.com/vacancies/
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Max Farnworth @maxfarnworth.bsky.social · 23/07/2026
🚨 I am very happy (and relieved!) to announce that I secured Emmy Noether funding by the @dfg.de to start my own group at @unimainz.bsky.social , hosted by Marion Silies & Jakob von Engelhardt in August! 🚨 Website coming soon - open for name/logo suggestions. They better be funny tho!
static.klipy.com
Sophia Petrillo with Megaphone in Golden Girls
ALT: Sophia Petrillo with Megaphone in Golden Girls
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Yi-Jyun Luo @yjluo.bsky.social · 20/07/2026
We are recruiting a postdoc to explore how corals evolved coloniality, novel cell types, and photosymbiosis using single-cell and genomic approaches. Based at Academia Sinica, Taipei. More: sgel.biodiv.tw
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Michael Raissig @michaelraissig.bsky.social · 08/07/2026
🌾 Every grass leaf shares the same repeating short-long cell pattern in its epidermis. Our new #preprint identifies the protein that builds it. 🔬🧬 📄 preprint: www.biorxiv.org/content/10.6... 🧵⬇️ 1/11
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Gaurav Vaidya @gvaidya.bsky.social · 01/07/2026
The first preprint from my PhD is out! :thread: How does an animal choose between two completely different reproductive fates? Here’s how one planarian does it :point_down: www.biorxiv.org/content/10.6...
biorxiv.org
Life-cycle trajectory inference links temperature-gated progenitors to reproductive fate
Temperature shapes reproductive strategies across animals, yet how individuals switch between sexual and asexual reproduction remains unknown. We establish the planarian Phagocata morgani as a model f...
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Ferwen @ferwen.bsky.social · 27/06/2026
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Luis Alberto Bezares Calderón @lbezarescalderon.bsky.social · 19/06/2026
I'm recruiting a postdoc and a research assistant in my lab in the south of France for an HFSP-funded project involving choanos. More info: Postdoc: bit.ly/4xxlJTX Research assistant: (EN) bit.ly/4aOwUha (FR) bit.ly/4vcy3av Please share with any potential applicant. Thx!
bit.ly
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Vicky & The Sleight Lab @vs-marine.bsky.social · 23/06/2026
🎉🐚🦪We have secured a HFSP grant to study how novel traits evolve in molluscs 🦪 🐚 🎉 abdn.ac.uk/news/25787/ Jessica Goodheart (American Museum of Natural History), Manabu Bessho‑Uehara (Tohoku University) and I will all be hiring at the post-doc level - please get in touch!
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Xavier Grau-Bové 🌾 @xgrau.bsky.social · 19/06/2026
Do you work with scRNAseq data in non-model organisms that have less-than-stellar gene annotations? ✨ 🧬 You might be interested in GeneExt, a nifty little tool by @zolotarg.bsky.social in @arnausebe.bsky.social's lab, published in #Bioinformatics earlier this year. #singlecell #transcriptomics
academic.oup.com
GeneExt: a gene model extension tool for enhanced single-cell RNA-seq analysis
AbstractMotivation. Incomplete gene models negatively impact single-cell gene expression quantification. This is particularly true in non-model species whe
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Mike Dorrity @mwdorr.bsky.social · 19/06/2026
First pre-print from the lab, a collaborative effort led by Jess Bourn @bournsupremacy.bsky.social, a fantastic PhD in my group. We resolve a key problem in development + evolution: how do we quantify heterochrony and link temporal variation to phenotype? www.biorxiv.org/content/10.6...
biorxiv.org
Quantitative mapping of heterochrony to species-specific phenotypes
The genetic program of animal development is conserved, but its rate of execution varies across species. Heterochrony, shifts in the relative timing of developmental events, generates phenotypic varia...
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paveltomancak.bsky.social @paveltomancak.bsky.social · 18/06/2026
Big paper from @hejnol.bsky.social lab. Title says it all. Congrats, Stanislav Kremnyov and the team. www.nature.com/articles/s41...
nature.com
A blastoporal organizer in a ctenophore - Nature
Experiments using the comb jelly Mnemiopsis leidyi and the sea anemone Nematostella vectensis reveal that the emergence of a core signalling pathway may have been a key innovation enabling the transit...
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Tim Wollesen @thechitoncorner.bsky.social · 29/05/2026
Excited to see this work from June Ordoñez's PhD published in Frontiers in Cell and Developmental Biology! 🎉 www.frontiersin.org/journals/cel... #zoology #spiralia #development #evolution
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Fabian Theis @fabiantheis.bsky.social · 12/05/2026
Excited to share our RegVelo paper in Cell www.cell.com/cell/fulltex... We unify RNA velocity + GRNs into one model → better OOD prediction of perturbations (e.g. gene KOs), with examples incl. neural crest KO predictions 🔬 Big thanks to W Wang, Z Hu & T Sauka-Spengler 🙏
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feña Palominos @fishfena.bsky.social · 04/03/2026
Join us this next Friday *the 13th* 👻 👻 to hear us talking about bones and cartilages in development and evolution 🐟 🐠 🦴
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Allan Carrillo-Baltodano @allancarbal.bsky.social · 04/03/2026
New from @chemamd.bsky.social lab @qmulsbbs.bsky.social Collab with Elaine Seaver, @baxevanislab.bsky.social @neva-meyer.bsky.social @abhinavsur.bsky.social New chromosome-level assembly for Capitella teleta 🪱 academic.oup.com/gbe/advance-... #DevBio #WormWednesday @genomebiolevol.bsky.social
Figure showing 3 panels,(A) a picture of annelid Capitella teleta on black background, (B) a cladogram with major biological model organisms showing the phylogenetic position of C. teleta and (C) schematics of the 10 chromosomes of C. teleta
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Yarui Diao @yaruidiao.bsky.social · 20/02/2026
Happy to share scHiCAR, an ultra-high throughout (millions of cells), low cost (5 cents/cell including NGS), and trimodal platform for integrated single-cell level analysis of mRNA, open chromatin, and 5-kb resolution looping with ground-truth data the same individual cell.
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MwahahahahahadScientist @mads100tist.bsky.social · 10/02/2026
I think that, like with art, papers offer an opportunity for you to tell the story your own way. Could another person research the same question? Yes. However, each person has the opportunity to do it and communicate it in their own way, and we must protect that 🧪
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Alberto Perez-Posada @apposada.bsky.social · 03/02/2026
Hello from Barcelona! Thrilled to announce my recent joining of the @arnausebe.bsky.social Lab at CRG with the support of a Beatriu de Pinós fellowship. Glad to be back in the city that saw me grow as a scientist. More more single cell omics, more evo-devo, more weird organisms... coming soon!
POV of the sea from the PRBB in Barcelona
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RobertoFeuda @robertofeuda.bsky.social · 13/01/2026
Thrilled to share that I’ve been awarded a FIS-3 Advanced Grant (ERC-inspired) to study the evolution of neurogenic GRNs. Recruiting soon: 4 postdocs + 3 PhDs Press release in Italian — to decolonise scientific language 😄 magazine.unibo.it/it/articoli/... Email me if interested in joining the lab
magazine.unibo.it
Un viaggio all’origine dei sistemi nervosi
Il nuovo progetto GRNevo, finanziato con un grant FIS-3 Advanced da 1,9 milioni di euro, studierà come si formano i neuroni durante lo sviluppo in specie animali molto distanti tra loro: dal moscerino...
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Arnau Sebé-Pedrós @arnausebe.bsky.social · 22/12/2025
Excited to share the final version of our study on Nematostella cell type regulatory programs. Part of our @erc.europa.eu StG project, this was a challenging 5-year effort extraodinarily led by @aelek.bsky.social and @martaig.bsky.social. www.nature.com/articles/s41...
nature.com
Decoding cnidarian cell type gene regulation - Nature Ecology & Evolution
This study reconstructs the gene regulatory networks that define cell types in the sea anemone Nematostella vectensis, providing a valuable resource for comparative regulatory genomics and the evoluti...
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Manlio De Domenico @manlius.bsky.social · 02/12/2025
Networks are #complex and their dynamics often look chaotic. But we can reconstruct latent spaces where their behavior becomes strikingly regular, revealing functional organization across biology, society and technology. How? 👉 rdcu.be/eSsqn 🧪🧠🦠🧬🌐 Kudos to Andrea, @dzanc.bsky.social & Sebastiano!
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Guillaume Jacquemet @guijacquemet.bsky.social · 29/11/2025
Your periodic reminder that science is not done by a few selected "stars scientists". Science is done by hundred of thousands. Siloed money mean a few flashy discoveries and a lot of waste. Want to change things? Make funding accessible and stop funding calls with less than 2% success rate.
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Alberto Perez-Posada @apposada.bsky.social · 27/11/2025
Very happy to announce that our article in multimodal single cell analyses in planaria is out in Nature Communications @natcomms.nature.com ! Thank you very much to everyone that made this work possible. I am very happy to see it out (: www.nature.com/articles/s41...
nature.com
Multimodal single cell analyses reveal gene networks of planarian stem cell differentiation - Nature Communications
Single cell transcriptomics and chromatin accessibility uncover the gene networks underlying planarian cell type differentiation, revealing insights into the combinatorial logic of planarian cell fate...
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Cnidarian developmental mechanisms group @clytia-vlfr.bsky.social · 19/11/2025
Drawing together findings from several projects over many years, we make a case that neural cell types in the Clytia larva have two embryological origins: i-cells and ectodermal. bioRxiv 2025.11.17.688882; doi: doi.org/10.1101/2025...
Separation of the Early gastrula into oral and aboral halves shows that some neural cell tupes derive from aboral ectoderm, and others from i-cells
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Nico Posnien @posnienlab.bsky.social · 18/11/2025
🧬 PhD Position: Evolutionary & Comparative Genomics 🕷️ Join us at @uni-goettingen.de for a 3-year PhD (65% TV-L E13). We will investigate the genomic & phenotypic impact of gene duplication across 233 arthropod genomes! More infos 👇 and s.gwdg.de/eDrAAY #Evolution #Genomics #Bioinformatics
s.gwdg.de
Posnien - Georg-August-Universität Göttingen
Webseiten der Georg-August-Universität Göttingen
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Ian Potter @ianzpotter.bsky.social · 10/11/2025
Happy There Is A Circulatory System Walking Through The Kitchen Day to all who celebrate.
It's an artistic representation of a circulatory system walking through a kitchen, as drawn by Dave Gibbons and written about by Alan Moore.
It happens a lot 'round here.
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Dr. Or M. Bialik |📚|🔬|🌊|⚒️ @obialik.bsky.social · 20/07/2025
Around extinction events, the shape of shells of certain groups becomes simpler. It's a sort of austerity measure to reduce the energy cost associated with producing a shell. Might be something we need to keep an eye out for in marine organisms now. 🧪🌊 Link: www.nature.com/articles/s41...
a, Global average temperature and the timing of large igneous province (LIP). Modified from ref. 108. b, Palaeo-ocean acidification events during the Mesozoic and Cenozoic. Solid red lines represent confirmed ocean acidification events. Dashed orange lines represent disputed ocean acidification events. c, Morphological simplification in brachiopods and foraminifera reduces the increased calcification energy caused by ocean acidification across the PTME and T-OAE in this study. AOAE, Aptian oceanic anoxic event; CALIP, Central Atlantic LIP; COAE, Cenomanian oceanic anoxic event; DLIP, Deccan LIP; KFLIP, Karoo-Ferrar LIP; KPgME, Cretaceous–Palaeogene mass extinction; NALIP, North Atlantic LIP; N-MLIP, Naturaliste-Madagascar LIP; PETM, Paleocene-Eocene Thermal Maximum; STLIP, Siberian Traps LIP; TJME, Triassic–Jurassic mass extinction.
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Dominic Grün @dominicgrun.bsky.social · 21/07/2025
Join our "Advances in Single-Cell Technologies" meeting in December in Freiburg, co-organised with Marco Prinz and @katrinkierdorf.bsky.social. Excellent line-up of speakers covering spatial technologies, lineage tracing, computational methods, and more. www.uniklinik-freiburg.de/single-cell-...
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Brooke Fitzwater, PhD (she/her) 🐟🪱🏳️‍🌈♾️ @oceanfilly.bsky.social · 16/07/2025
Are you a PI in a biology field looking for postdocs? Here is a Starter Pack of early career biologists currently seeking postdoctoral positions! (Also if you are searching for a postdoc, let me know if you want to be added!) go.bsky.app/8zZNEGV
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Xavier Grau-Bové 🌾 @xgrau.bsky.social · 04/07/2025
A single-cell ATACseq atlas of our favourite sea anemone, Nematostella vectensis! By @aelek.bsky.social @martaig.bsky.social
UMAP 2D projections of single-cell ATAC atlases of a Nematostella gastrula (left) and an adult specimen (right)
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Rosa Fernández @rosafernandez.bsky.social · 18/06/2025
Glad to see this paper finally out! An episodic burst of massive genomic rearrangements and the origin of non-marine annelids @natecoevo.nature.com @ibe-barcelona.bsky.social @csic.es @erc.europa.eu www.nature.com/articles/s41...
nature.com
An episodic burst of massive genomic rearrangements and the origin of non-marine annelids - Nature Ecology & Evolution
An analysis of annelid genomes reveals massive reshuffling of chromosomes in the ancestral lineage leading to clitellates, a clade composed of non-marine annelids, with potential implications for the ...
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genikhovich.bsky.social @genikhovich.bsky.social · 13/06/2025
David’s @davidmoersdorf.bsky.social cool paper about the role of Chordin in BMP signaling in the sea anemone Nematostella is finally out www.science.org/doi/10.1126/...
science.org
Chordin-mediated BMP shuttling patterns the secondary body axis in a cnidarian
Chordin-mediated BMP shuttling is the candidate mechanism for generating bilateral symmetry in the cnidarian-bilaterian ancestor.
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genikhovich.bsky.social @genikhovich.bsky.social · 09/06/2025
The last part of @paulknabl.bsky.social 's PhD is now available at www.biorxiv.org/content/10.1... Paul showed that BMP signaling is active in the diffuse nervous system of the sea anemone Nematostella and the box jellyfish Tripedalia. Moreover, suppression of BMP signaling in Nematostella leads...
biorxiv.org
The anti-neural role of BMP signaling is a side effect of its global function in dorsoventral patterning
In Bilateria with centralized nervous systems (e.g. in vertebrates or arthropods), the minimum of the BMP signaling activity gradient defines the position of the central nervous system. BMP-dependent ...
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Yoav Gilad @ygilad.bsky.social · 07/06/2025
I’ve been studying gene regulation in primates for over 20 years, and using RNA-seq since 2008 to compare expression across species. We thought we were being careful. We used curated orthologous exons to minimize alignment bias and focused on biologically meaningful comparisons. We were wrong.
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Nico Posnien @posnienlab.bsky.social · 02/06/2025
You want to apply #ATACseq in your emerging model organism, but you don't know where to start? Is #ATACseq the best method for my research questions? Search no more! We got you covered with our new review: doi.org/10.1002/jez.... Excellent collaboration with @gevol.bsky.social
doi.org
ATAC‐seq in Emerging Model Organisms: Challenges and Strategies
Principle of ATAC-seq (left), overview of arthropod species with published ATAC-seq data (middle), summary of experimental design (right).
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Lisa Sikkema @lisasikkema.bsky.social · 03/06/2025
Analyzing your single-cell data by mapping to a reference atlas? Then how do you know the mapping actually worked, and you’re not analyzing mapping-induced artifacts? We developed mapQC, a mapping evaluation tool www.biorxiv.org/content/10.1... from the ‪@fabiantheis lab. Let’s dive in🧵
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Allan Carrillo-Baltodano @allancarbal.bsky.social · 02/06/2025
It's finally here! Great start of the summer. We got our latest preprint from @chemamd.bsky.social in @qmulsbbs.bsky.social @qmulse.bsky.social, showing evidence of developmental system drift in the specification of dorsoventral (belly vs back) axis in annelids 🪱🪱🪱 #DevBio #EvoDevo
Image shows larvae of four different species of marine annelid worms, stained for muscle (magenta) and cilia (yellow). All with lateral views, with the mouth towards the left, and the future head pointing up. Images are to scale.
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Nature @nature.com · 07/05/2025
Nature research paper: Chromatin loops are an ancestral hallmark of the animal regulatory genome go.nature.com/4kcNObU
go.nature.com
Chromatin loops are an ancestral hallmark of the animal regulatory genome - Nature
The physical organization of the genome in non-bilaterian animals and their closest unicellular relatives is characterized; comparative analysis shows chromatin looping is a conserved feature of genome architecture and spatial genome regulation emerged early in animal evolution.
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Jordi Solana @jordisolana.bsky.social · 07/05/2025
Proud to present the peer-reviewed version of our Cell Type Allometry paper, out today in Science Advances! www.science.org/doi/10.1126/... Are animals of different sizes made of the same cell types? Here’s an update of the main points and revision items (with memes!) Thread 👇🧵
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Squishy Fauna 💫 @squishyfauna.bsky.social · 30/04/2025
Last day of #invertefest so let’s end with one of my most popular pieces of art! linktr.ee/squishyfauna #invertebrates #bugsky #bugs #entomology #insects #herps #frogs #snakes #sciart #bsnm
A digital drawing with dark blue text above saying “protect the” and the bottom text saying “weirdos”.

There are four animals in between the text.

The top left is a green and brown horned frog (aka Pac-Man frog). The top right is a pink and white flea beetle. The bottom left is a yellow slug. The bottom right is a kingsnake with grey and red scales. 

The background is light blue.
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Tim Wollesen @thechitoncorner.bsky.social · 13/04/2025
Finally out - our paper on shell field and spicule #EvoDevo in a variety of #mollusks such as #scaphopods, #cephalopods, #aplacophorans, and of course #polyplacophorans. Among others we show evolutionary highly conserved gene expression in aculiferan spicules onlinelibrary.wiley.com/doi/10.1002/...
onlinelibrary.wiley.com
Molluscan Shells, Spicules, and Gladii Are Evolutionarily Deeply Conserved
Evolutionarily conserved transcription factor encoding genes and other genes are expressed in the epithelia that give rise to spicules (green) and/or shells (blue) in developmental stages of diverse ...
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