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de Gee lab

@degeelab.bsky.social
275 followers 210 following 18 posts

Assistant Professor of Cognitive and Systems Neuroscience @ University of Amsterdam. Studying how arousal states shape perception and decision-making in humans and mice. www.janwillemdegee.info

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Enny van Beest @ennyvb.bsky.social · 04/09/2026
Textbook: tracking position during navigation is primarily the job of the hippocampus. Recent findings suggest a more complicated story. Recording >20k neurons brainwide, we indeed find spatial representations in every region! With @kenneth-harris.bsky.social and @carandinilab.net
Brainwide representations of a virtual corridor
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Rui Ponte Costa @somnirons.bsky.social · 27/08/2026
How does the brain continually adapt? Fresh in @natureportfolio.nature.com our super exciting collaboration with @mark-j-wagner.bsky.social showing that the cerebellum contextualises cortical dynamics enable multi-task learning: www.nature.com/articles/s41...
nature.com
Granule cells reorient cortical trajectories to separate contexts - Nature
Simultaneous imaging of premotor cortex and cerebellar granule cells in mice learning two skills in parallel shows that trajectories generalize in cortex but coherently reorient apart in granule cells...
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Kara McGaughey @kara-mcgaughey.bsky.social · 10/08/2026
New paper from my PhD out in @elife.bsky.social! 🎉 We asked: when the state of the world is changing, how does the brain adjust how much incoming evidence is accumulated? Turns out there isn't one answer—there are (at least) two. 🧵
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Donner Lab @donnerlab.bsky.social · 25/08/2026
📜 New paper out showing that “Task-irrelevant stimuli robustly drive phasic pupil-linked arousal but only weakly affect memory formation” led by @josefinehebisch.bsky.social and Pakita Van Puyenbroeck with Lars Schwabe, @degeelab.bsky.social & Tobias H. Donner doi.org/10.1038/s415...
doi.org
Task-irrelevant stimuli robustly drive phasic pupil-linked arousal but only weakly affect memory formation - Scientific Reports
Scientific Reports - Task-irrelevant stimuli robustly drive phasic pupil-linked arousal but only weakly affect memory formation
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Neuroskeptic @neuroskeptic.bsky.social · 10/08/2026
Reverse engineering neural circuits - @wiringthebrain.bsky.social talks to @behrenstimb.bsky.social www.thetransmitter.org/computationa...
thetransmitter.org
Success stories from computational neuroscience
Kevin Mitchell talks with Timothy Behrens about ring attractors, the role of innate structure, and an expanded view of cognitive maps.
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Kari Hoffman @karihoffman.bsky.social · 30/07/2026
📣New paper! How does the sleeping brain help us to integrate new experiences while managing memories from the past? For his PhD work, @sabbaspoor.bsky.social recorded hippocampal ensembles in freely moving monkeys and found something unexpected. 🧵1/n www.nature.com/articles/s41... 🧪🧠📈👩‍🔬#OpenAccess
nature.com
Experience reorganizes content-specific memory traces in macaques - Nature Neuroscience
In macaques, old memories, relative to new ones, are supported by more stable and interconnected cell assemblies. New-biased and old-biased assemblies reactivate during overnight sleep and can sometim...
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Leah Banellis @leahbanellis.bsky.social · 23/07/2026
Sensing your body (‘Interoception’) is everywhere in theories of mental health. But when we tested how well hundreds of people sensed their heart and lungs, the link to symptoms was almost nowhere to be found. 💣 🚨New @natmentalhealth.nature.com paper 🚨🎉 asks why 🧵 www.nature.com/articles/s44...
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Spencer LaVere Smith @spencerlaveresmith.bsky.social · 13/07/2026
Ecological Visual Processing in the Mouse - with @michaelgoard.bsky.social @crisniell.bsky.social @mbeyeler.bsky.social Visual computations that are engaged in ecological contexts: active sensing, motion processing, scene analysis, distance estimation, and spatial perception. doi.org/10.1146/annu...
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Biyu Jade He @biyuhe.bsky.social · 09/07/2026
New paper alert from our lab! nature.com/articles/s41... We used stimuli sequences following 1/f statistical patterns—an ubiquitous statistical structure in natural stimuli—to probe predictive processing in the human brain. How does the brain predict upcoming sensory inputs based on past inputs?
nature.com
Neural mechanisms of time-forward predictions for naturalistic auditory tone sequences - Nature Communications
A longstanding question is how the brain predicts complex, naturalistic sensory events and updates those predictions when expectations are violated. Using intracranial recordings, the authors show tha...
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de Gee lab @degeelab.bsky.social · 29/06/2026
Come be my colleague! 🚀 We’re hiring an Assistant Professor in Perceptual and Cognitive Neuroscience: werkenbij.uva.nl/en/vacancies... The UvA is a wonderfully collaborative, inspiring place to do science—if you love brains and perception, and working with great colleagues, please do apply!
werkenbij.uva.nl
Vacancy — Assistant Professor in Perceptual and Cognitive Neuroscience
<p><span>Are you passionate about neuroscience and eager to contribute to groundbreaking research on neuronal mechanisms of perception and cognition? The Faculty of Science at the University of Amster...
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Liz Siefert @lizsiefert.bsky.social · 29/06/2026
New preprint! We show low arousal states promote hippocampal ripple genesis in sleep and wake. This bridges rodent work, where ripples predominate during sleep, with human studies reporting ripples during active behavior, identifying low arousal as a common mechanism www.biorxiv.org/content/10.6...
biorxiv.org
Arousal state modulates human hippocampal ripples
Hippocampal ripples are transient, high-frequency oscillations linked to memory replay and consolidation. Ripples are well-characterized in rodents to occur during periods of behavioral inactivity (i....
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Marc Slutzky @marcslutzky.bsky.social · 22/06/2026
Our paper is now in print in Nature @nature.com. If you're interested in local field potentials, especially #high-gamma activity, and/or #spikes, check it out! TL;DR: High gamma is not mainly filtered spikes, but mainly summed nearby PSPs. www.nature.com/articles/s41...
nature.com
Active dissociation of intracortical spiking and high gamma activity - Nature
A brain–machine interface is used in monkeys to investigate the biophysical underpinnings of cortical high gamma-band activity, a signal that is often studied in the context of many brain functions.
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Laura Grima @lauragrima.bsky.social · 23/05/2026
@fluketc.bsky.social and @dudman.bsky.social have hit it out the park again. In my (perhaps biased) opinion this - along with their previous papers - is field-defining work. www.science.org/doi/10.1126/...
science.org
Reward magnitude determines reinforcement learning efficiency
Standard animal learning studies minimize individual reward magnitudes to maximize the repetitions of reinforced behaviors. We investigated how reward magnitude influences initial learning across five...
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Misophonia Research Fund @misophoniafund.bsky.social · 22/05/2026
Could your eyes help diagnose misophonia? 👀 New, MRF-funded research from @degeelab.bsky.social and team found that people with #misophonia show measurable pupil dilation when hearing trigger sounds, & those responses may predict symptom severity – even in mild cases. Read more: buff.ly/HLlXrhf
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Agnès Landemard @agnesland.bsky.social · 15/04/2026
How does blood flow relate to brain activity? We discovered that it reflects two neural populations affected oppositely by arousal. Together, they explain neurovascular coupling in all brain regions and brain states! Out today in Nature: rdcu.be/fdC2A @uclbrainscience.bsky.social
The supply of blood to brain tissue is thought to depend on the overall neural activity in that tissue, and this dependence is thought to differ across brain regions and across brain states. However, studies supporting these views have measured neural activity as a bulk quantity and related it to blood supply following disparate events in different regions. Here we measure fluctuations in neuronal activity and blood volume across the mouse brain, and find that their relationship is consistent across brain states and brain regions but differs in two opposing brainwide neural populations. Functional ultrasound imaging (fUSI) revealed that whisking, a marker of arousal, is associated with brainwide fluctuations in blood volume. Simultaneous fUSI and Neuropixels recordings showed that neurons that increase activity with whisking have distinct haemodynamic response functions compared with those that decrease activity. Their summed contributions predicted blood volume across states.Brainwide Neuropixels recordings revealed that these opposing populations coexist in the entire brain. Their differing contributions to blood volume largely explain the apparent differences in blood volume fluctuations across regions. The mouse brain thus contains two neural populations with opposite relations to brain state and distinct relationships to blood supply, which together account for brainwide fluctuations in blood volume.
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Jeremiah Cohen @jeremiahycohen.bsky.social · 13/04/2026
Delighted to share our discoveries about one of the brain's neurotransmitter systems: www.biorxiv.org/content/10.6... Together with colleagues at the @alleninstitute.org, we have learned a lot about a tiny cluster of neurons in the brainstem locus coeruleus (LC) that releases norepinephrine (NE). 1
biorxiv.org
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Dirk Gütlin @gutlin.bsky.social · 08/04/2026
Neural circuits encode prior knowledge of temporal statistics www.nature.com/articles/s41...
nature.com
Neural circuits encode prior knowledge of temporal statistics - Nature Neuroscience
This study shows that cerebellar circuits learn and encode prior probabilities of event timing. Cell-type-specific neural activity reflects environmental statistics and guides predictive motor behavio...
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Stefano Palminteri @stepalminteri.bsky.social · 07/04/2026
📘 Excited to share that Decision Making: A Very Short Introduction (OUP) is now available online (PDF for subscribers): doi.org/10.1093/9780... What is it about? Understanding how humans (and other agents) make choices. Below a bit more information👇
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Lucas Benjamin @lucaswbenjamin.bsky.social · 27/02/2026
Excited to share our new paper in @pnas.org with @bnmorillon.bsky.social & @valentinwyart.bsky.social www.pnas.org/doi/10.1073/... We study three core inference systems, and how their interaction shapes human learning and decision-making.
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Biyu Jade He @biyuhe.bsky.social · 04/02/2026
Ever wondered how the Dalmatian Dog effect works? The human brain can quickly learn from a single experience and generalize it to related experiences — an impressive feat so far not matched by AI. Our new paper in @natcomms.nature.com reveals how this works. www.nature.com/articles/s41...
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Magda del Río @magdadelrio.bsky.social · 21/01/2026
Now out! 👉 rdcu.be/eZ27x
rdcu.be
Indecision and recency-weighted evidence integration in non-clinical and clinical settings
Nature Human Behaviour - This research finds a strong recency bias in information gathering, attenuated in those on the OCD spectrum—a possible mechanism for indecisiveness. Behavioural and...
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Misophonia Research Fund @misophoniafund.bsky.social · 05/01/2026
Will measuring pupil-size changes be a window into understanding #misophonia severity? At the University of Amsterdam, Dr. de Gee's (@degeelab.bsky.social) MRF-funded research will develop an affordable, home-based tool to measure physiological responses to trigger sounds. (1/3)
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Konstantinos Tsetsos @ktsetsos.bsky.social · 14/01/2026
⏳ Just over 2 weeks left to apply! ⏳ We are looking for talented Cognitive Neuroscientists to join our team at Trinity College Dublin for postdoc positions funded by a European Research Council (ERC) Consolidator grant. www.jobs.ac.uk/job/DPV296/r... www.ktsetsoslab.net/_files/ugd/0...
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Mackenzie Weygandt Mathis @trackingactions.bsky.social · 31/12/2025
Interested in the latest advances in neuroscience (neural dynamics and internal models) and how they can be leveraged to build smarter, adaptive AI? ➡️ My first real solo piece 🖤🫶 @natneuro.nature.com rdcu.be/eWVmA
rdcu.be
Leveraging insights from neuroscience to build adaptive artificial intelligence
Nature Neuroscience - Adaptive intelligence envisions AI that, like animals, learns online, generalizes and adapts quickly. This Perspective reviews biological foundations, progress in AI and...
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Lindsay Schwarz @lindsayschwarz.bsky.social · 15/12/2025
Thrilled this is out, led by former PD Cameron Ogg (now with her own lab at @rhodescollege.bsky.social!). It was a driven by a desire to see, in real-time, how LC activity/NE release influences downstream targets in behaving animals. SO hard to do, but Cameron did it! www.cell.com/cell-reports...
cell.com
Locus coeruleus norepinephrine neurons facilitate orbitofrontal cortex remapping and behavioral flexibility
Ogg et al. use in vivo imaging techniques to record activity in the locus coeruleus (LC) and the orbitofrontal cortex (OFC) during a reversal learning task in freely moving rodents. They show that man...
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DurstewitzLab @durstewitzlab.bsky.social · 29/11/2025
Unlike current AI systems, animals can quickly and flexibly adapt to changing environments. This is the topic of our new perspective in Nature MI (rdcu.be/eSeif), where we relate dynamical and plasticity mechanisms in the brain to in-context and continual learning in AI. #NeuroAI
rdcu.be
What neuroscience can tell AI about learning in continuously changing environments
Nature Machine Intelligence - Durstewitz et al. explore what artificial intelligence can learn from the brain’s ability to adjust quickly to changing environments. By linking neuroscience...
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Andrew MacAskill @macaskillaf.bsky.social · 14/11/2025
Congrats to Ella for her new paper! She asked a really interesting question about how the brain represents uncertainty during hidden state inference, and in a lovely crossover with theoretical work, she shows that in mice, acetylcholine dynamics play a crucial role. www.biorxiv.org/content/10.1...
biorxiv.org
Acetylcholine reflects uncertainty during hidden state inference
To act adaptively, animals must infer features of the environment that cannot be observed directly, such as which option is currently rewarding, or which context they are in. These internal estimates,...
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Jonathan A. Michaels @jonathanamichaels.bsky.social · 29/10/2025
Thrilled that our paper is out today in Nature! www.nature.com/articles/s4...
nature.com
Sensory expectations shape neural population dynamics in motor circuits
Nature - Experiments with human volunteers and macaques show that expectations produced by probabilistic cueing of future sensory inputs shape motor circuit dynamics in order to increase the...
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Eelke Spaak @eelkespaak.bsky.social · 22/10/2025
🧠 Regularization, Action, and Attractors in the Dynamical “Bayesian” Brain direct.mit.edu/jocn/article... (still uncorrected proofs, but they should post the corrected one soon--also OA is forthcoming, for now PDF at brainandexperience.org/pdf/10.1162-...)
direct.mit.edu
Regularization, Action, and Attractors in the Dynamical “Bayesian” Brain
Abstract. The idea that the brain is a probabilistic (Bayesian) inference machine, continuously trying to figure out the hidden causes of its inputs, has become very influential in cognitive (neuro)sc...
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Peter Kok @peterkok.bsky.social · 21/10/2025
@dotproduct.bsky.social's first first author paper is finally out in @sfnjournals.bsky.social! Her findings show that content-specific predictions fluctuate with alpha frequencies, suggesting a more specific role for alpha oscillations than we may have thought. With @jhaarsma.bsky.social. 🧠🟦 🧠🤖
jneurosci.org
Contents of visual predictions oscillate at alpha frequencies
Predictions of future events have a major impact on how we process sensory signals. However, it remains unclear how the brain keeps predictions online in anticipation of future inputs. Here, we combin...
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Trends in Cognitive Sciences @cp-trendscognsci.bsky.social · 20/10/2025
Online Now: Hierarchical interactions between sensory cortices defy predictive coding
dlvr.it
Hierarchical interactions between sensory cortices defy predictive coding
Perceptual experience depends on recurrent interactions between lower and higher cortices. One theory, predictive coding, posits that feedback from higher to lower brain regions decreases neuronal activity predicted by higher-level representations. Despite the widespread adoption of predictive coding in neuroscience, the correspondence to neurophysiological findings in sensory cortices remains elusive. Here, we review how the canonical patterns of intra- and inter-cortical interactions that occur during perception and shifts of attention deviate from those predicted by predictive coding. We argue that these circuit interactions are better captured by alternative theories, which we summarize under the umbrella term BELIEF. We review how BELIEF theories account for the inter-areal interactions during attentive perception.
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Ole Jensen @olejensen.bsky.social · 16/10/2025
Decoding performance (MVPA) better for OPM-MEG than SQUID-MEG 😎. The improved spatial specificity of OPM-MEG due to the reduced brain-sensor distance is key. And more sensors (beyond 40) don't improve decoding. Preprint from our recent @thechbh.bsky.social study: www.biorxiv.org/content/10.1...
biorxiv.org
Decoding with multivariate pattern analysis is superior for optically pumped magnetometer-based magnetoencephalography compared to superconducting quantum interference device-based systems
Background: Multivariate pattern analysis (MVPA) has become an increasingly important method for decoding distributed brain activity from neural electrophysiological recordings by leveraging both temp...
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Jia-Hou (JH) Poh @jiahou-poh.bsky.social · 13/10/2025
How does motivation shape learning and memory? In a new review w @ralisonadcock.bsky.social, we propose that under different motivational ‘moods', neuromodulators set distinct neural contexts to determine information processing and memory formation. doi.org/10.1146/annu... #psychscisky #neuroskyence
annualreviews.org
Motivation as Neural Context for Adaptive Learning and Memory Formation
Our memories shape our perception of the world and guide adaptive behavior. Rather than a veridical record of experiences, memory is selective. An accumulating body of work suggests that motivational ...
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Mark Histed @markhisted.org · 25/09/2025
The brain is incredibly densely connected. Human cerebral cortex may have as many as *one trillion* connections. Most of those cortical connections are recurrent, inside each area. What do they do? New paper from me in Annual Reviews: 🧪 🧠📈 1/ www.annualreviews.org/content/jour...
annualreviews.org
Active Filtering: A Predictive Function of Recurrent Circuits of Sensory Cortex | Annual Reviews
Our brains encode many features of the sensory world into memories: We can sing along with songs we have heard before, interpret spoken and written language composed of words we have learned, and reco...
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Cognitive Science Group @cogscigroup.bsky.social · 09/10/2025
Our spotlight article on Goueytes et al. (2025) study is now online at Trends in Neurosciences: "Pre- and post-decision signals of certainty in changing minds", by P. Barttfeld, @ncomay.bsky.social, I. Embon & @guillermosolovey.bsky.social www.cell.com/trends/neuro...
cell.com
Pre- and post-decision signals of certainty in changing minds
In a recent study, Goueytes and colleagues combined computational modeling with intracranial recordings to dissect the neural basis of confidence and changes of mind. They reveal a temporally organize...
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Ann Kennedy @antihebbiann.bsky.social · 09/10/2025
Finally out: our recent work with Nick Betley is a view into how the brain reshapes its behavior in the face of competing survival needs- and also a potential angle on treatment targets for enduring pain. A brief rundown... www.nature.com/articles/s41...
nature.com
A parabrachial hub for need-state control of enduring pain - Nature
Activity in a set of parabranchial neurons in the mouse brain is increased during chronic pain, predicts coping behaviour, and can be modulated by circuits activated by survival threats.
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Alicia Izquierdo @aliciaizquierdo.bsky.social · 08/10/2025
🎇 Excited to finally share JL Romero Sosa’s publication! Results are from single-cell imaging in different subregions of rat frontal cortex during ✨de novo learning. Spoiler: everything is not everywhere all at once www.nature.com/articles/s41...
nature.com
Neural coding of choice and outcome are modulated by uncertainty in orbitofrontal but not secondary motor cortex - Nature Communications
Neural mechanisms underlying flexible learning and decision-making are not fully understood. Using single-cell calcium imaging, authors here found that neurons in orbitofrontal and secondary motor cortex exhibit complementary roles in reward learning, with neurons in the former exerting a sustained role in conditions of uncertainty.
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Earl K. Miller @earlkmiller.bsky.social · 06/10/2025
For all the knucklehead reviewers out there. Principles for proper peer review - Earl K. Miller jocnf.pubpub.org/pub/qag76ip8... #neuroscience
jocnf.pubpub.org
Principles for proper peer review
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François Stockart @francoisstock.bsky.social · 29/09/2025
Our #sEEG study is now published in Nature Communications: rdcu.be/eIkoG! 🧠 Key finding: We discovered neural evidence accumulation for visual perception that's independent of report preparation—recorded from >3000 channels across 3 experiments! #Neuroscience #Consciousness #OpenAccess
rdcu.be
Cortical evidence accumulation for visual perception occurs irrespective of reports
Nature Communications - Perception can occur in the absence of report. Here, the authors use intracranial recordings to show that sequential sampling of sensory evidence in the ventral visual...
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BogaertsLab @bogaertslab.bsky.social · 24/09/2025
Curious about the human ability to extract regularities from sensory input (i.e., “statistical learning”) and individual differences therein? #CognitiveScience #Learning Our #Consensus paper presents the collective insights of 27 researchers worldwide 🌎 💬 🌍 💬 🌏 💬: 🔗 doi.org/10.31234/osf...
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Lindsay Schwarz @lindsayschwarz.bsky.social · 24/09/2025
With 2 postdocs moving on to faculty positions🥳, we're looking to hire someone new. If you're interested in norepinephrine and neural circuits, please apply! tinyurl.com/42bfe24k
tinyurl.com
Postdoctoral Research Associate - Developmental Neurobiology
A postdoctoral research associate position is available in the laboratory of Dr. Lindsay Schwarz in the Department of Developmental Neurobiology at St. Jude Children’s Research Hospital. The Schwarz l...
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Mariam Aly @mariamaly.bsky.social · 16/09/2025
How do we update our predictions when our environment changes? The hippocampus rapidly integrates previously distinct sequences to support updated predictions. Proud of this work with Hannah Tarder-Stoll & @chrisbaldassano.bsky.social! www.biorxiv.org/content/10.1...
biorxiv.org
The Hippocampus Rapidly Integrates Sequence Representations During Novel Multistep Predictions
Memories for temporally extended sequences can be used adaptively to predict future events on multiple timescales, a function that relies on the hippocampus. For such predictions to be useful, they sh...
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Tobias Hauser @tobiasuhauser.bsky.social · 24/07/2025
We are hiring for several research positions for this grant, starting early next year. Please reach out if you're interested! More details on the jobs here: devcompsy.org/wp-content/u...
devcompsy.org
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International Brain Laboratory @intlbrainlab.bsky.social · 03/09/2025
Two flagship papers from the International Brain Laboratory, now out in ‪@Nature.com‬: 🧠 Brain-wide map of neural activity during complex behaviour: doi.org/10.1038/s41586-025-09235-0 🧠 Brain-wide representations of prior information in mouse decision-making: doi.org/10.1038/s41586-025-09226-1 +
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de Gee lab @degeelab.bsky.social · 05/09/2025
🧠✨ Exciting new research alert! ✨🧠 Did you know that catecholamines can reduce choice history biases in perceptual decision-making? 🧐🔍 Paper: journals.plos.org/plosbiology/... With @donnerlab.bsky.social and @swammerdamuva.bsky.social
journals.plos.org
Catecholamines reduce choice history biases in perceptual decision making
How do catecholamines, such as like noradrenaline, influence the role of prior expectations in perceptual decision-making? This study shows that pharmacologically increasing catecholamine levels reduc...
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Sandra Romero Pinto @sromeropinto.bsky.social · 13/08/2025
My first paper with @naoshigeuchida.bsky.social is finally out in @natcomms.nature.com ! rdcu.be/eACGf TL;DR: asymmetric learning rates can be induced by shifts in tonic dopamine giving rise to pessimistic/optimistic biases in agents or animals undergoing reinforcement learning .
rdcu.be
Tonic dopamine and biases in value learning linked through a biologically inspired reinforcement learning model
Nature Communications - Accurate future predictions are essential for guiding behavior, and disruptions in this process are associated with psychiatric disorders. Here the authors show that changes...
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Konrad Kording @kordinglab.bsky.social · 31/07/2025
Its a new term and a lot of us are preparing their lectures. I am a huge fan of online ways of teaching. And my student Joey Rudoler @jrudoler.bsky.social made a great online stats course. Shiny app and all. Modern take on stats. Thought some of you may appreciate.
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de Gee lab @degeelab.bsky.social · 07/07/2025
Are you at @assc28.bsky.social #ASSC28? On Wednesday I will present a poster on the causal relationship between choice history biases and catecholamines (noradrenaline / dopamine). With @donnerlab.bsky.social et al.
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de Gee lab @degeelab.bsky.social · 07/07/2025
Are you at @assc28.bsky.social #ASSC28? Later, @stijnnuiten.bsky.social will present exciting cross-species results on the interaction between latent behavioral states, pupil-linked arousal, and V1 activity. Great collab w/ @psterzer.bsky.social @svangaal.bsky.social @pennartz.bsky.social et al.
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Marcelo Mattar @marcelomattar.bsky.social · 02/07/2025
Thrilled to see our TinyRNN paper in @nature! We show how tiny RNNs predict choices of individual subjects accurately while staying fully interpretable. This approach can transform how we model cognitive processes in both healthy and disordered decisions. doi.org/10.1038/s415...
doi.org
Discovering cognitive strategies with tiny recurrent neural networks - Nature
Modelling biological decision-making with tiny recurrent neural networks enables more accurate predictions of animal choices than classical cognitive models and offers insights into the underlying cog...
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