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Roger Cruz-Vera

@cruzveralab.bsky.social
226 followers 198 following 53 posts

Associate Professor University of Alabama in Huntsville. I have studied E. coli ribosomes and their products and regulations throughout my academic life. #Ribosomes #biofilms #tRNA sites.google.com/a/uah.edu/cruz-ver…

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Reposted by Roger Cruz-Vera
erzbergerlab.bsky.social @erzbergerlab.bsky.social · 08/10/2026
Ribosome remodeling drives translation adaptation during viral infection and cellular stress: Molecular Cell www.cell.com/molecular-ce...
cell.com
Ribosome remodeling drives translation adaptation during viral infection and cellular stress
Tsai et al. discover that ribosome composition is reprogrammed in response to intrinsic and external cellular perturbations, which supports ribosome remodeling as a conserved mechanism that enables ad...
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Reposted by Roger Cruz-Vera
Frances Yap @ribo1214.bsky.social · 28/09/2026
#MicroSky #Antibiotics #AMR
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joe dobbs @joedobbs.bsky.social · 25/09/2026
Our work investigating the cooperation between gene expression machines is now online @cellpress.bsky.social. Check it out if you're interested in high-throughput #cryoET, transcription and translation, or using structural biology to quantify gene expression in cells! 🔬 www.cell.com/cell/fulltex...
cell.com
Single-cell visual proteomics of a minimal bacterium reveals structural coordination of gene expression machineries
Cryo-electron tomography (cryo-ET) resolves and quantifies an almost complete view of bacterial translation, revealing how gene expression machineries coordinate across the processes of transcription,...
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Reposted by Roger Cruz-Vera
Elisa Frezza @elisafrezza.bsky.social · 25/09/2026
Happy to share our Application Note on RNA and chemical probing. MARS-RNA: An Automated Pipeline for Correlating RNA Molecular Dynamics Trajectories with Chemical Probing Data pubs.acs.org/jcisd8/artic...
pubs.acs.org
MARS-RNA: An Automated Pipeline for Correlating RNA Molecular Dynamics Trajectories with Chemical Probing Data
Abstract. Ribonucleic acid (RNA) molecules fold into complex, highly dynamic three-dimensional conformational structures that govern their biological activ
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Reposted by Roger Cruz-Vera
Craig Kaplan @triggerloop.bsky.social · 25/09/2026
Cryo-EM peeps are living the dream www.science.org/doi/10.1126/...
science.org
In-cell structures visualize human pre-ribosome assembly in the nucleolus
In eukaryotes, ribosome biogenesis initiates within the nucleolus, a hallmark multilayered compartment of the nucleus. Structures of pre-ribosomes have been characterized ex situ, but their assembly p...
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Reposted by Roger Cruz-Vera
Frances Yap @ribo1214.bsky.social · 24/09/2026
TT faculty opening at Indiana University-Bloomington. ⬇️
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Reposted by Roger Cruz-Vera
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 25/09/2026
Sparsomycin inhibits translation through a conserved mechanism across all domains of life academic.oup.com/nar/article/...
academic.oup.com
Sparsomycin inhibits translation through a conserved mechanism across all domains of life
Abstract. Sparsomycin (SPA) is a broad-spectrum inhibitor of protein synthesis with activity across all three domains of life. Although SPA has long been k
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Reposted by Roger Cruz-Vera
Dmitri Petrov @petrovadmitri.bsky.social · 17/09/2026
We are searching for an Assistant Professor in Evolutionary Biology! Looking for colleagues asking fundamental questions relating to evolutionary processes and drivers of evolutionary patterns. If you think it is you, please do apply! And please repost. facultypositions.stanford.edu/jobs/assista...
facultypositions.stanford.edu
Assistant Professor in Evolutionary Biology - Stanford University, California, United States
The Department of Biology at Stanford University seeks applicants for a tenure-track Assistant Professor in Evolutionary Biology. A successful candidate will conduct research that asks fundamental que...
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Reposted by Roger Cruz-Vera
Heather Feaga @heatherfeaga.bsky.social · 15/09/2026
Latest from the lab! Kevin England @kevinengland.bsky.social leads a study on how production of various alarmones (p,pp,pppGpp!) depletes GTP, remodels the transcriptome, and inhibits translation. Wonderful collaboration with Jade Wang's lab at UW Madison. academic.oup.com/nar/article/...
academic.oup.com
The alarmone pGpp inhibits translation through GTP depletion
Abstract. Bacteria produce the alarmone nucleotides ppGpp and pppGpp during stress to affect replication, transcription, and metabolism. ppGpp and pppGpp a
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Reposted by Roger Cruz-Vera
Frances Yap @ribo1214.bsky.social · 13/09/2026
Mycobacterial rRNA methyltransferase GidB modulates discrimination of mischarged tRNA doi.org/10.7554/eLif... #MicroSky #RNASky 🧪
doi.org
Ribosomal RNA methylation by GidB modulates discrimination of mischarged tRNA
The ribosomal rRNA methyltransferase GidB is involved in the discrimination of mischarged tRNAs in mycobacteria.
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Reposted by Roger Cruz-Vera
Frances Yap @ribo1214.bsky.social · 11/09/2026
#RNASky #ribosome Manipulation of protein translation and stem cell self-renewal by CRISPR activation of rRNA transcription | Science www.science.org/doi/10.1126/...
science.org
Manipulation of protein translation and stem cell self-renewal by CRISPR activation of rRNA transcription
Ribosomal RNA (rRNA) transcription rates vary during development, and their dysregulation is linked to diseases such as cancer and ribosomopathies. Owing to their high abundance and genomic redundancy...
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Reposted by Roger Cruz-Vera
Beckmann Lab @beckmannlab.bsky.social · 10/09/2026
📰Happy to share our preprint.🥳Here we investigate🔬, the essential role of the conserved RNA helicase Drs1. We show that its engagement and activity license timely incorporation of 25S rRNA domain III into maturing nucleolar pre-60S subunits.👇 doi.org/10.64898/2026.09.05.749353 #cryoEM #ribosome #RNA
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Roger Cruz-Vera @cruzveralab.bsky.social · 06/09/2026
@ribo1214.bsky.social I reconnected with my friends and collaborators and met many of them in person for the first time at the #CSHL Translational Control meeting. The "tnaC gang" is shown in the picture. I need to get more involved in these meetings; next: the Bacteria and Phage meeting.
A group of scientists in a meeting.
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Reposted by Roger Cruz-Vera
Wilson Lab @wilsonlab.bsky.social · 03/09/2026
www.nature.com/articles/s41...
nature.com
Rewiring the ribosome to translate proteins encoded in its own RNA - Nature
Bacterial ribosomes can synthesize proteins encoded within their own RNA.
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Reposted by Roger Cruz-Vera
Anahid (Ana) @anahidam.bsky.social · 01/05/2026
Looking for a #postdoc outside the US, focusing on gut microbiome, AMR dynamics & phage-bacteria interactions. Bridging wet lab and computational approaches🦠👩‍💻. Hartmann Lab, Northwestern University, defending late 2026. Boosts appreciated 🙏🧫🧪 #microbiome #metagenomics #MicroSky
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Fadel Fakih @fakih98.bsky.social · 28/08/2026
Nonviral delivery of chemically modified tRNA rescues nonsense mutations in cystic fibrosis www.science.org/doi/10.1126/...
science.org
Nonviral delivery of chemically modified tRNA rescues nonsense mutations in cystic fibrosis
Suppressor transfer RNAs (sup-tRNAs) can rescue disease-causing nonsense mutations by promoting readthrough of premature termination codons (PTCs). Their clinical translation is limited by suboptimal ...
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Reposted by Roger Cruz-Vera
Evelina Tutucci @anilevetu.bsky.social · 27/08/2026
The proportional scaling of mRNA and ribosome concentrations controls eukaryotic cell growth. From Jan Skotheim's team www.nature.com/articles/s41...
nature.com
The proportional scaling of mRNA and ribosome concentrations controls eukaryotic cell growth - Nature Cell Biology
Gao et al. show that yeast grow faster by proportionally increasing mRNA and ribosome concentrations to increase actively translating ribosomes, while elongation remains constant. A mass-action model ...
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Reposted by Roger Cruz-Vera
Jamie Cate @jhdcate.bsky.social · 27/08/2026
And work from the labs of Nicolas Leulliot and Alexandre Smirnov here. 6/ www.biorxiv.org/content/10.6...
biorxiv.org
Universally conserved isoasparylation sustains ribosome biogenesis and function
All living beings use ribosomes to synthesize proteins from α-amino acids. Inherited from our common ancestor, a few universally conserved ribosome biogenesis steps, introducing essential ribosomal RN...
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Reposted by Roger Cruz-Vera
Jamie Cate @jhdcate.bsky.social · 27/08/2026
Congrats to the authors of the two teams who discovered these enzymes! Ours here. 5/ www.biorxiv.org/content/10.6...
biorxiv.org
Enzymatic formation of a conserved isoaspartate in ribosomal protein uS11
Isoaspartate (isoAsp) formation is typically viewed as a "molecular clock" through nonenzymatic degradation of aspartate or asparagine during protein aging. Here we report a nearly universal enzymatic...
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Reposted by Roger Cruz-Vera
Frances Yap @ribo1214.bsky.social · 24/08/2026
"16S ribosomal RNA modification drives transcript-specific translation efficiency" pubmed.ncbi.nlm.nih.gov/42632017/ from @ramamurthilab.bsky.social lab #Ribosome #RNASky #MicroSky
pubmed.ncbi.nlm.nih.gov
16S ribosomal RNA modification drives transcript-specific translation efficiency - PubMed
Bacterial ribosomal RNAs (rRNAs) are decorated with conserved nucleotide modifications, but the functionality of these modifications is often underexplored. MraW (RsmH) is a 16S rRNA methyltransferase. Here, we report that deletion of mraW corrects a late-stage sporulation defect in Bacillus subtili …
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Reposted by Roger Cruz-Vera
Michael D. Green, PhD @michaeldgreen.phd · 07/08/2026
Curious how this can be spun as increasing competition and innovation…
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Nilesh Banavali @nilesh-banavali.bsky.social · 04/08/2026
Our study on medically important antibacterial binding to a ribosomal small subunit is on the cover of this issue of Biochemistry! pubs.acs.org/bichaw/issue...
pubs.acs.org
Volume 65 Issue 14 | Biochemistry | ACS Publications
Biochemistry publishes exceptional rigorous high-impact research across all of biological chemistry.
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Frances Yap @ribo1214.bsky.social · 07/08/2026
#MicroSky @cruzveralab.bsky.social
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 07/08/2026
We lost a giant of #glycotime, John Hanover @niddk 😢 . His pioneering work on O-GlcNAcylation as a modulator of glucose metabolism transformed our understanding of glycosylation as a signaling PTM. In this 2023 podcast he shares his passion for the field. irp.nih.gov/podcast/2023...
irp.nih.gov
Dr. John Hanover — The Bittersweet Study of Glycobiology | NIH Intramural Research Program
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Reposted by Roger Cruz-Vera
Noah Whiteman @nkwhiteman.bsky.social · 06/08/2026
I’m thrilled to share that our search for a tenure-track colleague in my *truly wonderful and collegial* Genetics, Genomics, Evolution and Development Division in the MCB Department at Berkeley @berkeleymcb.bsky.social is live! Please share this broad search widely: aprecruit.berkeley.edu/JPF05481
aprecruit.berkeley.edu
Assistant Professor -Genetics, Genomics, Evolution, and Development - Molecular and Cell Biology
University of California, Berkeley is hiring. Apply now!
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Reposted by Roger Cruz-Vera
Salvador Almagro-Moreno @bioetry.bsky.social · 06/08/2026
We are looking for motivated Postdocs to join our lab to investigate the emergence and evolution of bacterial pathogens. If your profile and interests fit the description below get in touch! Please share.Thank you!
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Jamie Cate @jhdcate.bsky.social · 29/07/2026
Done!
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Frances Yap @ribo1214.bsky.social · 30/07/2026
a 60+ pages of review. It's a textbook for bacterial stress adaptation. Thanks @kirstenjunglab.bsky.social 's lab for the comprehensive review. #MicroSky
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Reposted by Roger Cruz-Vera
Evelina Tutucci @anilevetu.bsky.social · 28/07/2026
A new article from Jeff Coller's lab. www.cell.com/molecular-ce...
cell.com
Nascent chain folding status modulates ribosome dynamics and mRNA stability through the ribosome-associated chaperone Zuo1
Chang et al. show that co-translational protein misfolding feeds back to ribosomes, slowing translation elongation and triggering mRNA decay. The ribosome-associated chaperone Zuo1 mediates this respo...
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Reposted by Roger Cruz-Vera
Frances Yap @ribo1214.bsky.social · 29/06/2026
🧪 #MicroSky #RNASky Great collaboration with @dunhamlab.bsky.social lab on solving the unusual hexameric structure of a bifunctional nuclease YhaM in complex with 2 distinct RNA substrates. Check out Dunham's summary at www.linkedin.com/posts/christ...
linkedin.com
YhaM Structure Revealed in PNAS | Christine Dunham posted on the topic | LinkedIn
We are excited to present our recent research published in PNAS in collaboration with the Yap lab from Northwestern. Congrats to Jacob Mattingly who led our structural biology efforts and Anna Lipońsk...
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Reposted by Roger Cruz-Vera
Stella Hurtley @smhsci.bsky.social · 26/06/2026
Out now in @science.org Antibiotics stimulate protein transfer to persister cells | Science www.science.org/doi/10.1126/...
science.org
Antibiotics stimulate protein transfer to persister cells
The exchange of biological matter between bacterial cells drives adaptation and evolution. However, whether bacteria can exchange functional proteins remains unclear. In this work, we found that antib...
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Reposted by Roger Cruz-Vera
Wilson Lab @wilsonlab.bsky.social · 20/06/2026
www.nature.com/articles/s41...
nature.com
A new antibiotic scaffold hits a new target - Nature Reviews Microbiology
This study describes the discovery of a new antibiotic with a previously unknown mode of action.
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Reposted by Roger Cruz-Vera
Jamie Cate @jhdcate.bsky.social · 23/06/2026
A note on the proposed rule, "Regulation For Federal Financial Assistance," www.regulations.gov/document/OMB... I posted comments on Weds 6/17, and they just appeared today. Keep them coming!
regulations.gov
Regulations.gov
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Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 16/06/2026
Ribosome hibernation in archea with HibA, with a bacterial line hpf/raiA domain rdcu.be/foDtr
rdcu.be
A family of ribosome hibernation factors widespread in Archaea
Nature Communications - Ribosome hibernation preserves translation machinery during stress. Here, the authors identify a ribosome hibernation factor that is widespread in archaea and combines...
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Reposted by Roger Cruz-Vera
Heather Feaga @heatherfeaga.bsky.social · 16/06/2026
Additional fact: women were admitted to the last Ivy Leauge holdout in 1983, twenty years after being admitted to Space.
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Reposted by Roger Cruz-Vera
Joachim Frank @joachim123.bsky.social · 04/06/2026
nam02.safelinks.protection.outlook.com?url=https%3A...
nam02.safelinks.protection.outlook.com
Structural studies of nedicistrovirus IRES-driven, initiation factor-independent translation shed light on key steps of eukaryotic translation elongation
Abstract. We utilized the nedicistrovirus (NediV) intergenic region (IGR) internal ribosomal entry site (IRES)-mediated, initiation factor-independent tran
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Reposted by Roger Cruz-Vera
Wilson Lab @wilsonlab.bsky.social · 03/06/2026
www.nature.com/articles/s41...
nature.com
A natural depsipeptide antibiotic binds the E-site of the bacterial ribosome - Nature
Improved fractionation strategies can identify antibiotics with previously unseen scaffolds and mechanisms, exemplified by manikomycin from Streptomyces rimosus, which acts by targeting the E-site of ...
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Haaris Ahsan Safdari @haarissafdari.bsky.social · 03/06/2026
🚨 New in @natcomms.nature.com 🚨 Excited to share our paper on how proline-rich antimicrobial peptides interact with the bacterial ribosome. Using cryo-EM, we found that tiny sequence changes cause these peptides to "flip" orientation in the exit tunnel! 🔄🧫 Read: www.nature.com/articles/s41...
nature.com
Flipping antimicrobial peptides in the exit tunnel of the bacterial ribosome - Nature Communications
In this work authors show how minimal mutations in proline-rich antimicrobial peptides can flip their orientation in the ribosome exit tunnel, switching their mechanism from stalling translation termi...
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Reposted by Roger Cruz-Vera
Jamie Cate @jhdcate.bsky.social · 31/05/2026
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erzbergerlab.bsky.social @erzbergerlab.bsky.social · 28/05/2026
rdcu.be/flaTq
rdcu.be
Mechanisms and disease relevance of mitochondrial translation in humans
Nature Reviews Molecular Cell Biology - This Review discusses new insights into the intricate regulation of mitochondrial protein synthesis, the pathological consequences of its dysfunction in...
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Reposted by Roger Cruz-Vera
Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 17/05/2026
Codon degeneracy contributes to divergent fitness effects of rare tRNAs with A-starting anticodons www.biorxiv.org/content/10.6... => why are tRNAs with adenine at the wobble position (tRNA_ANN) are almost universally absent in nature ? mistranslation-related fitness costs... 🦠
biorxiv.org
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Frances Yap @ribo1214.bsky.social · 15/05/2026
Great review on glutmate metabolism. Applicable to other firmicutes. journals.asm.org/doi/10.1128/...
journals.asm.org
Moonlighting in metabolism: bifunctional enzymes control nitrogen metabolism in Bacillus subtilis | Microbiology and Molecular Biology Reviews
SUMMARYGlutamate is an essential building block and the most important amino group donor in the cell. The reactions involved in synthesis and degradation link carbon to nitrogen metabolism. The synthesis and activity of the enzymes catalyzing these reactions must, therefore, be precisely regulated. In the Gram-positive model bacterium Bacillus subtilis, glutamate is exclusively synthesized by the combined action of the glutamine synthetase (GS) and the glutamate synthase (GOGAT). The GS catalyzes the ATP-dependent assimilation of ammonium, resulting in the formation of glutamine. Glutamine is converted together with 2-oxoglutarate by the GOGAT into glutamate, which can be used either for further assimilation of ammonium, or as a building block, or amino group donor. The glutamate dehydrogenases (GDHs) GudB and RocG are strictly devoted to glutamate degradation. In recent years, exciting new observations have been made in nitrogen metabolism in B. subtilis. The GS, GOGAT, and the GDHs are multifunctional enzymes, with the GS and GDHs acting as trigger enzymes in the control of gene expression, in addition to their enzymatic activity. The glutamate-synthesizing GOGAT acts as a counter enzyme, inactivating the major GDH GudB to prevent a futile cycle. In this review, we intend to summarize the current state of knowledge about nitrogen metabolism in B. subtilis and discuss open questions that need to be answered in the future.
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Sarah Lucas @saerobe.bsky.social · 08/05/2026
The Biology Department at Syracuse University is hiring! Please share with anyone you think might be interested. www.sujobopps.com/postings/112...
sujobopps.com
Assistant Teaching Professor - Biology and Biochemistry
The Department of Biology at Syracuse University invites applications for a non-tenure-track Assistant Teaching Professor to teach Biology and Biochemistry undergraduate level classes, starting in fal...
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Reposted by Roger Cruz-Vera
Clément Madru @cryoclem.bsky.social · 05/05/2026
Happy to share our latest paper: www.nature.com/articles/s41... Great collaboration with @ifremer.bsky.social, @cbitoulouse.bsky.social & @pasteur.fr. Studying stress in P. abyssi with near-native, minimally purified ribosomes, we identified HibA, a new hibernation factor widespread in Archaea.
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Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 01/05/2026
academic.oup.com/mbe/article/...
academic.oup.com
Stoichiometry-induced differential selection on codon optimization among ribosomal protein genes in bacterial species
Abstract. While it is well established that highly expressed genes in bacteria exhibit stronger codon optimization than lowly expressed ones, whether codon
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Joachim Frank @joachim123.bsky.social · 29/04/2026
I came here in 1975. I'm a Nobel Prize-winning scientist born in Germany during WWII, came here in 1975 thinking there was no way fascism could take hold in this country. I was wrong. I don't not want to be book-ended by two fascist regimes. We will stand up and set things right.
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Roger Cruz-Vera @cruzveralab.bsky.social · 25/04/2026
@ribo1214.bsky.social The nascent peptide opens wide the constriction region, a very cool observation.
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Michal Kolář @mhko.bsky.social · 25/04/2026
Hugo and his poster about the enormous flexibility of the ribosomal tunnel constriction. Preprint available here: www.biorxiv.org/content/10.6...
Hugo and his poster in shades of blue, showing results of molecular dynamics simulations of the bacterial ribosome.
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Wilson Lab @wilsonlab.bsky.social · 25/04/2026
www.nature.com/articles/s41...
nature.com
The regulation, function and disease relevance of cytoplasmic tRNAs - Nature Reviews Molecular Cell Biology
This Review discusses the expression and maturation of human cytoplasmic tRNAs and recent insights into their regulation of translation. The authors also explore emerging roles of tRNAs in ribosome-as...
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Wilson Lab @wilsonlab.bsky.social · 24/04/2026
www.biorxiv.org/content/10.6...
biorxiv.org
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