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Cole J. Batty

@colebatty.bsky.social
227 followers 290 following 68 posts

NIH T32 Fellow in the Marasco Lab at Dana Farber/Harvard Medical School studying B cells in aging

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Reposted by Cole J. Batty
bioRxiv Immunology @biorxiv-immuno.bsky.social · 05/10/2026
CHAIR an antigen-resolved antibody-reactome resource for healthy adult immune aging www.biorxiv.org/content/10.64898/20…
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Elizabeth Wood, PhD @lizbwood.bsky.social · 24/09/2026
Introducing: continuous variational synthesis 📄 jurabio.com/s/cvs.pdf We’re pleased to announce a new advance in our ability to synthesize generative model-designed DNA sequences at petascale.
jurabio.com
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Cole J. Batty @colebatty.bsky.social · 22/09/2026
Preprint came out a while ago but here's a cool and useful technique: In vitro induction of human germinal center B cells | Science Immunology www.science.org/doi/full/10....
science.org
In vitro induction of human germinal center B cells
Human induced GC-like B (iGCB) cells are generated in vitro from circulating naive or marginal zone cells.
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Alex Rubinsteyn @alexr.bsky.social · 16/09/2026
I'm working on an AI eval project that needs domain expert human graders across different corners of biology. Let me know if you want a wacky consulting project, the biological domain likely can be whatever you already do research on. (ideally post-PhD)
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bioRxivpreprint @biorxivpreprint.bsky.social · 05/08/2026
Tfh dysfunction underlies poor responses to HBV vaccination www.biorxiv.org/content/10.64898/20…
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Reposted by Cole J. Batty
bioRxiv Immunology @biorxiv-immuno.bsky.social · 07/07/2026
FCRL5 is a fucose-sensitive IgG-Fc receptor with binding properties distinct from classical Fcγ receptors www.biorxiv.org/content/10.64898/20…
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Eric Chevet @ericchevet.bsky.social · 16/06/2026
A spatial multi-omics atlas of immunosenescence reveals germinal-center B cell alteration in human lymph nodes: Cell Press Blue www.cell.com/cell-press-b...
cell.com
A spatial multi-omics atlas of immunosenescence reveals germinal-center B cell alteration in human lymph nodes
Farzad et al. present a spatial multi-omics atlas of human lymph nodes spanning ages 18–86 years. Senescent-like B cells are heterogeneous and shift spatially from interfollicular zones into germinal ...
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Reposted by Cole J. Batty
Journal of Clinical Investigation @jci.org · 12/04/2026
From earlier this week: Do cells of different lineages age differently? doi.org/10.1172/JCI1... Sundeep Khosla & team compare the senescence phenotype of mesenchymal versus immune cells from murine bone and bone marrow, revealing important differences between them.
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Reposted by Cole J. Batty
Javi Ibarrondo @jibarrondo.bsky.social · 01/04/2026
Historic 1994 influenza vaccine cohorts define breadth of antibody and B cell responses toward future influenza A and B viruses | Science Translational Medicine www.science.org/doi/10.1126/... 🧪
science.org
Historic 1994 influenza vaccine cohorts define breadth of antibody and B cell responses toward future influenza A and B viruses
B cell responses that bound to future H1N1 and influenza B virus strains, but not H3N2 strains, were elicited in adults by the 1994 influenza vaccine.
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Alex Rubinsteyn @alexr.bsky.social · 28/03/2026
Any immunologists looking for a 1yr staff scientist job in NC? I’m not sure if I’m staying at UNC past 2027 but I’m feeling the weight of accumulating experimental backlog. Ideally already in the area, experienced in T-cell assays like IFNg ELISpot, ICS, MHC multimer flow, &c
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Thiago Carvalho @cyrilpedia.bsky.social · 21/03/2026
'Using single-telomere & sc analyses combined with mathematical modeling, we identify a threshold length at which telomeres switch into dysfunction. A single shortest telomere below the threshold length is necessary & sufficient to trigger the onset of replicative senescence in a majority of cells'
nature.com
Both genome instability and replicative senescence stem from the shortest telomere in telomerase-negative cells - Nature Communications
In absence of telomerase, short telomeres trigger senescence. Here, the authors find using single-telomere-single-cell approaches in budding yeast, that one critically short telomere is required and s...
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Reposted by Cole J. Batty
bioRxiv Immunology @biorxiv-immuno.bsky.social · 24/02/2026
Strain-specific differences in the response to egg-derived versus recombinant protein influenza vaccines www.biorxiv.org/content/10.64898/20…
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Cole J. Batty @colebatty.bsky.social · 16/02/2026
Massive resource!
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Cole J. Batty @colebatty.bsky.social · 20/01/2026
Kynurenine pathway dysregulation plays a key role in so many different conditions (including aging). IDO/TDO inhibition has not worked out well so far, but this paper suggests some other targets.
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Bryan Bryson @thebrysonlab.bsky.social · 07/12/2025
The @ragoninstitute.bsky.social is launching a new faculty search for a computational immunologist! Applications are open now and reviewed on a rolling basis. Please share broadly with your networks! #immunosky www.nature.com/naturecareer...
nature.com
Computational Immunologist - Boston, Massachusetts (US) job with Ragon Institute of MGH, MIT, & Harvard | 12849577
The Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology, and Harvard in Cambridge MA, together with the Departmen
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Waggoner Lab @labwaggoner.bsky.social · 03/12/2025
Plasma-localized IgG glycosylation is dynamically altered by the endothelium www.pnas.org/doi/10.1073/...
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Waggoner Lab @labwaggoner.bsky.social · 26/11/2025
A common progenitor gives rise to fibroblastic reticular cells and vascular smooth muscle cells in murine lymph nodes @jem.org rupress.org/jem/article/...
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Reposted by Cole J. Batty
bioRxiv Immunology @biorxiv-immuno.bsky.social · 01/11/2025
B lymphocytes that enter the germinal center late preferentially differentiate into memory cells that recognize subdominant epitopes www.biorxiv.org/content/10.1101/202…
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bioRxiv Immunology @biorxiv-immuno.bsky.social · 20/10/2025
Autoantibody origins in lupus and in relapse post CAR-T therapy www.biorxiv.org/content/10.1101/202…
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Cole J. Batty @colebatty.bsky.social · 21/10/2025
Cooler techniques available every day!
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Reposted by Cole J. Batty
bioRxiv Immunology @biorxiv-immuno.bsky.social · 02/10/2025
Enhanced human antigen-specific B cell responses using in vitro 3D tonsil cultures containing stromal cells www.biorxiv.org/content/10.1101/202…
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Adrian Liston @labliston.bsky.social · 20/09/2025
In the US it is called “Dawn”. We haven’t tried this, but the U.K. and Belgian brands both work fine. If you try Dawn please let us all know!
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Adrian Liston @labliston.bsky.social · 19/09/2025
Just take a look. The Foxp3 fix/perm kit is good for TFs, but kills endogenous GFP. The eBio preserves GFP, but is incomplete at allowing TF staining. Burton's Best Buffer is as good as the best under all conditions (except phospho-flow), and preserves dye integrity too. Plus it is dirt cheap. 🎤
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bioRxiv Immunology @biorxiv-immuno.bsky.social · 01/09/2025
PRDM1 shapes germinal center B-cell clonal diversity by gating chromatin accessibility during light-to-dark zone transition www.biorxiv.org/content/10.1101/202…
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Waggoner Lab @labwaggoner.bsky.social · 12/07/2025
Modulation of B cell receptor activation by antibody competition @cp-cellreports.bsky.social www.cell.com/cell-reports...
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bioRxiv Immunology @biorxiv-immuno.bsky.social · 08/07/2025
Isolation of genetically diverse influenza antibodies highlights the role of IG germline gene variation and informs the design of population-comprehensive vaccine strategies www.biorxiv.org/content/10.1101/202…
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Adrian Liston @labliston.bsky.social · 21/06/2025
Pre-print time! Our new study on #systemsimmunology analysis of #Alzheimers patients is out now on @medrxivpreprint.bsky.social. This is the culmination of a long collaboration with Rik Vandenberghe, Stephanie Humblet-Baron and Lidia Yshii's labs at KU Leuven. 🧵1/8 www.medrxiv.org/content/10.1...
medrxiv.org
A systems immunology analysis of Alzheimer’s disease reveals an age- and environmental exposure-independent disturbance in B cell maturation
Alzheimer’s disease is a severe neurodegenerative disorder, with multifactorial mechanisms of disease development and progression. Evidence from genetic association studies, animal models, and clinica...
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Reposted by Cole J. Batty
Waggoner Lab @labwaggoner.bsky.social · 04/06/2025
Preprint: In vitro induction of human germinal center B-cells www.researchsquare.com/article/rs-6...
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Eliver Ghosn @eliverghosn.bsky.social · 16/05/2025
We are still recruiting a B-cell immunologist to join our team and lead projects funded by the Gates Foundation and NIH. If you are looking for a postdoc or a more senior Staff Scientist position, please apply! Please repost to help reach out to our colleagues affected by recent RIFs. Thank you!
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Cole J. Batty @colebatty.bsky.social · 18/04/2025
Don't sleep on LINE1s!
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Cole J. Batty @colebatty.bsky.social · 09/04/2025
Rest in peace to inspiring scientist and mentor Michael Cancro www.cell.com/immunity/ful...
cell.com
Michael Cancro (1949–2025)
Just a few weeks ago, researchers and educators connected to immunology lost a wonderful friend and colleague: Michael Cancro, professor of pathology and lab medicine at the University of Pennsylvania, passed away suddenly at his home just outside Philadelphia. He will be deeply missed.
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Eliver Ghosn @eliverghosn.bsky.social · 04/04/2025
We are #Hiring! Please share! #ImmunoSky 🧪 Join our multi-disciplinary B-cell team @Emory/ATL to lead exciting projects on human immunology funded by the Gates Foundation and the NIH (Position fully funded and not dependent on future grants). ghosnlab.science/join-us #BYourCell
We are Hiring!
Join our multi-disciplinary team as a Postdoc or a Bioinformatician in B-cell Immunology to lead exciting projects on human immunology funded by the Gates Foundation and the NIH (Position fully funded and not dependent on future grants).
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Reposted by Cole J. Batty
Waggoner Lab @labwaggoner.bsky.social · 02/04/2025
Two distinct durable human class-switched memory B cell populations are induced by vaccination and infection @cp-cellreports.bsky.social www.cell.com/cell-reports...
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Cole J. Batty @colebatty.bsky.social · 27/03/2025
Cool
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Reposted by Cole J. Batty
Davide Angeletti @angelettilab.bsky.social · 25/03/2025
Our latest study by PhD student #RomainGailleton shows that upon #influenza infection, #Bcell can respond rapidly by forming ectopic #GerminalCenter within the nasal tissue. The work has just been published in @pnas.org (1/N) www.pnas.org/doi/10.1073/...
pnas.org
Ectopic germinal centers in the nasal turbinates contribute to B cell immunity to intranasal viral infection and vaccination | PNAS
The nasal mucosa is the first immunologically active site that respiratory viruses encounter and establishing immunity at the initial point of path...
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Brian Space @brianspace.bsky.social · 08/03/2025
@labonnelab.bsky.social overcast.fm/+AA5AWObyBF8 What an unbelievably great appearance with amazing focus and insight by Professor LaBonne. Thank you so much!
overcast.fm
Trump’s NIH Cuts Send Shockwaves Through the Science World — Odd Lots
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Cole J. Batty @colebatty.bsky.social · 05/03/2025
I'm happy to have played a small part in this first paper from an ongoing collaboration between the Marasco, Sage, Haigis, and Hemberg labs to decipher mechanisms of poor influenza vaccine response in older individuals
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Immunity @cp-immunity.bsky.social · 28/02/2025
Online now: Online now: Early influenza virus exposure shapes the B cell response to influenza vaccination in individuals 50 years later
dlvr.it
Early influenza virus exposure shapes the B cell response to influenza vaccination in individuals 50 years later
To understand the influence and longevity of early influenza imprinting, Spangler et al. investigate the response to an H2 HA vaccine in individuals with and without exposure to H2N2 virus 50 years ago. They find that those with prior exposure have a…
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Brian Stevenson Ph.D. spirochete lab @bstevensonlab.bsky.social · 27/02/2025
The NIH funding freeze has blocked 3 of our grant proposals (so far), which threatens to shut down our Lyme disease research program within a year. 🦠🧫🧪🧬🔬 #MicroSky www.reuters.com/business/hea...
reuters.com
Trump administration loophole snags US research grants from Lyme to lung disease
The Trump administration has for weeks been blocking the U.S. National Institutes of Health process for issuing new research grants for everything from Lyme disease to lung and heart disease, according to researchers, a departing NIH official and documents.
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Scott Delaney @scott-delaney.bsky.social · 21/02/2025
NIH indirects case update: Hearing ongoing now, and I'll try to live tweet some notable exchanges. Prior to more detailed arguments, Judge Kelley starts off with a few point questions to both sides: (I'm paraphrasing here)
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Stand Up for Science! @standupforscience.net · 20/02/2025
☀️📣 Looking for a STATE LEAD and VOLUNTEERS to help us #standupforscience2025 in North Carolina! Know someone interested? Fill out this form: airtable.com/app4h5wUssMG... #scienceforall #sciencenotsilence
Image of north carolina with text looking for north carolina volunteers
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The Transmitter @thetransmitter.bsky.social · 18/02/2025
A large portion of grants awarded by the U.S. National Institutes of Health cannot be funded for the foreseeable future because of an indefinite hold on submissions to the Federal Register, according to an email reviewed by The Transmitter. By @avaskham.bsky.social bit.ly/3X8ngz8
thetransmitter.org
Federal Register hold makes ‘end run’ around court pause on NIH funding freeze
NIH-related updates to the Federal Register, which are required for the scheduling of study sections and advisory councils, are on hold indefinitely, according to an email reviewed by <i>The Transmitt...
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Jeremy Berg @jeremymberg.bsky.social · 15/02/2025
ATTENTION (PLEASE SHARE) If anyone has or knows of any positions that might be appropriate for the NIH staff members who were terminated, please post the information in this thread. There are lots of talented and accomplished people who may be looking for new opportunities.
media.tenor.com
a poster that says if life gives you lemon make lemonade on it
ALT: a poster that says if life gives you lemon make lemonade on it
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Corey Watson @cdubsig.bsky.social · 13/02/2025
Did you know that human immunoglobulin constant genes are crazy diverse? It's got me thinking...Proud of Uddalok Jana! And grateful for collabs @guryaari.bsky.social @williamlees.bsky.social @ayeletperes.bsky.social @e-engelbrecht1.bsky.social @yscientist.bsky.social www.biorxiv.org/content/10.1...
biorxiv.org
The human immunoglobulin heavy chain constant gene locus is enriched for large complex structural variants and coding polymorphisms that vary in frequency among human populations
The immunoglobulin heavy chain constant (IGHC) domain of antibodies (Ab) is responsible for a variety of effector functions critical to Ab mediated immunity. In human, this domain is encoded by genes ...
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Cole J. Batty @colebatty.bsky.social · 07/02/2025
That's a strange mistake to make!
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Andy Fraser @andyfraser.bsky.social · 04/02/2025
Delighted to share our latest paper describing a method to read the levels of hundreds of metabolites or drugs in parallel using DNA sequencing. This method, which we call ‘smol-seq’ (Small MOLecule sequencing), harnesses the power of DNA sequencing for metabolite detection: rdcu.be/d8xLv (1/6)
rdcu.be
Quantifying metabolites using structure-switching aptamers coupled to DNA sequencing
Nature Biotechnology - Metabolites can be quantified using a combination of aptamers and DNA barcodes.
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Alexander Dent @follicular.bsky.social · 01/02/2025
Absolutely fascinating story showing different functions for CD4 vs CD8 regulatory cells in humoral immunity and the role of Foxp3 vs Granzyme B. #ImmunoSky #GCBcellSky #TfhSky www.nature.com/articles/s41...
nature.com
Differential roles of human CD4+ and CD8+ regulatory T cells in controlling self-reactive immune responses - Nature Immunology
Here the authors use a tonsil organoid culture model system to investigate the roles of human CD4+ and CD8+ regulatory T cells in controlling self-reactive immune responses. CD4+ regulatory T cells we...
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Izabella A. Pena, PhD 🇧🇷🇨🇦 @izabellapena.bsky.social · 25/01/2025
Here is a quick thread to promote my research! After years of dedicated research, I'm thrilled to share our article just published at Nature Communications :) www.nature.com/articles/s41... #metabolism #CRISPRscreens #mitochondria
nature.com
SLC25A38 is required for mitochondrial pyridoxal 5’-phosphate (PLP) accumulation
Nature Communications - Pyridoxal 5’-phosphate (PLP, vitamin B6) is crucial for various metabolic processes. Here, the authors identified SLC25A38 as a key regulator of mitochondrial PLP...
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