Reposted by Cole J. BattybioRxiv Immunology @biorxiv-immuno.bsky.social · 05/10/2026CHAIR an antigen-resolved antibody-reactome resource for healthy adult immune aging www.biorxiv.org/content/10.64898/20… 011
Reposted by Cole J. BattyElizabeth Wood, PhD @lizbwood.bsky.social · 24/09/2026Introducing: continuous variational synthesis 📄 jurabio.com/s/cvs.pdf We’re pleased to announce a new advance in our ability to synthesize generative model-designed DNA sequences at petascale.jurabio.com 134
Cole J. Batty @colebatty.bsky.social · 22/09/2026Preprint came out a while ago but here's a cool and useful technique: In vitro induction of human germinal center B cells | Science Immunology www.science.org/doi/full/10....science.orgIn vitro induction of human germinal center B cellsHuman induced GC-like B (iGCB) cells are generated in vitro from circulating naive or marginal zone cells. 011
Reposted by Cole J. BattyAlex Rubinsteyn @alexr.bsky.social · 16/09/2026I'm working on an AI eval project that needs domain expert human graders across different corners of biology. Let me know if you want a wacky consulting project, the biological domain likely can be whatever you already do research on. (ideally post-PhD) 231
Reposted by Cole J. BattybioRxivpreprint @biorxivpreprint.bsky.social · 05/08/2026Tfh dysfunction underlies poor responses to HBV vaccination www.biorxiv.org/content/10.64898/20… 022
Reposted by Cole J. BattybioRxiv Immunology @biorxiv-immuno.bsky.social · 07/07/2026FCRL5 is a fucose-sensitive IgG-Fc receptor with binding properties distinct from classical Fcγ receptors www.biorxiv.org/content/10.64898/20… 022
Reposted by Cole J. BattyEric Chevet @ericchevet.bsky.social · 16/06/2026A spatial multi-omics atlas of immunosenescence reveals germinal-center B cell alteration in human lymph nodes: Cell Press Blue www.cell.com/cell-press-b...cell.comA spatial multi-omics atlas of immunosenescence reveals germinal-center B cell alteration in human lymph nodesFarzad et al. present a spatial multi-omics atlas of human lymph nodes spanning ages 18–86 years. Senescent-like B cells are heterogeneous and shift spatially from interfollicular zones into germinal ... 063
Reposted by Cole J. BattyJournal of Clinical Investigation @jci.org · 12/04/2026From earlier this week: Do cells of different lineages age differently? doi.org/10.1172/JCI1... Sundeep Khosla & team compare the senescence phenotype of mesenchymal versus immune cells from murine bone and bone marrow, revealing important differences between them. 033
Reposted by Cole J. BattyJavi Ibarrondo @jibarrondo.bsky.social · 01/04/2026Historic 1994 influenza vaccine cohorts define breadth of antibody and B cell responses toward future influenza A and B viruses | Science Translational Medicine www.science.org/doi/10.1126/... 🧪science.orgHistoric 1994 influenza vaccine cohorts define breadth of antibody and B cell responses toward future influenza A and B virusesB cell responses that bound to future H1N1 and influenza B virus strains, but not H3N2 strains, were elicited in adults by the 1994 influenza vaccine. 1137
Reposted by Cole J. BattyAlex Rubinsteyn @alexr.bsky.social · 28/03/2026Any immunologists looking for a 1yr staff scientist job in NC? I’m not sure if I’m staying at UNC past 2027 but I’m feeling the weight of accumulating experimental backlog. Ideally already in the area, experienced in T-cell assays like IFNg ELISpot, ICS, MHC multimer flow, &c 033
Reposted by Cole J. BattyThiago Carvalho @cyrilpedia.bsky.social · 21/03/2026'Using single-telomere & sc analyses combined with mathematical modeling, we identify a threshold length at which telomeres switch into dysfunction. A single shortest telomere below the threshold length is necessary & sufficient to trigger the onset of replicative senescence in a majority of cells'nature.comBoth genome instability and replicative senescence stem from the shortest telomere in telomerase-negative cells - Nature CommunicationsIn absence of telomerase, short telomeres trigger senescence. Here, the authors find using single-telomere-single-cell approaches in budding yeast, that one critically short telomere is required and s... 032
Reposted by Cole J. BattybioRxiv Immunology @biorxiv-immuno.bsky.social · 24/02/2026Strain-specific differences in the response to egg-derived versus recombinant protein influenza vaccines www.biorxiv.org/content/10.64898/20… 032
Cole J. Batty @colebatty.bsky.social · 20/01/2026Kynurenine pathway dysregulation plays a key role in so many different conditions (including aging). IDO/TDO inhibition has not worked out well so far, but this paper suggests some other targets. 010
Reposted by Cole J. BattyBryan Bryson @thebrysonlab.bsky.social · 07/12/2025The @ragoninstitute.bsky.social is launching a new faculty search for a computational immunologist! Applications are open now and reviewed on a rolling basis. Please share broadly with your networks! #immunosky www.nature.com/naturecareer...nature.comComputational Immunologist - Boston, Massachusetts (US) job with Ragon Institute of MGH, MIT, & Harvard | 12849577The Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology, and Harvard in Cambridge MA, together with the Departmen 01620
Reposted by Cole J. BattyWaggoner Lab @labwaggoner.bsky.social · 03/12/2025Plasma-localized IgG glycosylation is dynamically altered by the endothelium www.pnas.org/doi/10.1073/... 141
Reposted by Cole J. BattyWaggoner Lab @labwaggoner.bsky.social · 26/11/2025A common progenitor gives rise to fibroblastic reticular cells and vascular smooth muscle cells in murine lymph nodes @jem.org rupress.org/jem/article/... 031
Reposted by Cole J. BattybioRxiv Immunology @biorxiv-immuno.bsky.social · 01/11/2025B lymphocytes that enter the germinal center late preferentially differentiate into memory cells that recognize subdominant epitopes www.biorxiv.org/content/10.1101/202… 072
Reposted by Cole J. BattybioRxiv Immunology @biorxiv-immuno.bsky.social · 20/10/2025Autoantibody origins in lupus and in relapse post CAR-T therapy www.biorxiv.org/content/10.1101/202… 031
Reposted by Cole J. BattybioRxiv Immunology @biorxiv-immuno.bsky.social · 02/10/2025Enhanced human antigen-specific B cell responses using in vitro 3D tonsil cultures containing stromal cells www.biorxiv.org/content/10.1101/202… 031
Reposted by Cole J. BattyAdrian Liston @labliston.bsky.social · 20/09/2025In the US it is called “Dawn”. We haven’t tried this, but the U.K. and Belgian brands both work fine. If you try Dawn please let us all know! 221
Reposted by Cole J. BattyAdrian Liston @labliston.bsky.social · 19/09/2025Just take a look. The Foxp3 fix/perm kit is good for TFs, but kills endogenous GFP. The eBio preserves GFP, but is incomplete at allowing TF staining. Burton's Best Buffer is as good as the best under all conditions (except phospho-flow), and preserves dye integrity too. Plus it is dirt cheap. 🎤 2205
Reposted by Cole J. BattybioRxiv Immunology @biorxiv-immuno.bsky.social · 01/09/2025PRDM1 shapes germinal center B-cell clonal diversity by gating chromatin accessibility during light-to-dark zone transition www.biorxiv.org/content/10.1101/202… 011
Reposted by Cole J. BattyWaggoner Lab @labwaggoner.bsky.social · 12/07/2025Modulation of B cell receptor activation by antibody competition @cp-cellreports.bsky.social www.cell.com/cell-reports... 082
Reposted by Cole J. BattybioRxiv Immunology @biorxiv-immuno.bsky.social · 08/07/2025Isolation of genetically diverse influenza antibodies highlights the role of IG germline gene variation and informs the design of population-comprehensive vaccine strategies www.biorxiv.org/content/10.1101/202… 031
Reposted by Cole J. BattyAdrian Liston @labliston.bsky.social · 21/06/2025Pre-print time! Our new study on #systemsimmunology analysis of #Alzheimers patients is out now on @medrxivpreprint.bsky.social. This is the culmination of a long collaboration with Rik Vandenberghe, Stephanie Humblet-Baron and Lidia Yshii's labs at KU Leuven. 🧵1/8 www.medrxiv.org/content/10.1...medrxiv.orgA systems immunology analysis of Alzheimer’s disease reveals an age- and environmental exposure-independent disturbance in B cell maturationAlzheimer’s disease is a severe neurodegenerative disorder, with multifactorial mechanisms of disease development and progression. Evidence from genetic association studies, animal models, and clinica... 15921
Reposted by Cole J. BattyWaggoner Lab @labwaggoner.bsky.social · 04/06/2025Preprint: In vitro induction of human germinal center B-cells www.researchsquare.com/article/rs-6... 051
Reposted by Cole J. BattyEliver Ghosn @eliverghosn.bsky.social · 16/05/2025We are still recruiting a B-cell immunologist to join our team and lead projects funded by the Gates Foundation and NIH. If you are looking for a postdoc or a more senior Staff Scientist position, please apply! Please repost to help reach out to our colleagues affected by recent RIFs. Thank you! 133
Cole J. Batty @colebatty.bsky.social · 09/04/2025Rest in peace to inspiring scientist and mentor Michael Cancro www.cell.com/immunity/ful...cell.comMichael Cancro (1949–2025)Just a few weeks ago, researchers and educators connected to immunology lost a wonderful friend and colleague: Michael Cancro, professor of pathology and lab medicine at the University of Pennsylvania, passed away suddenly at his home just outside Philadelphia. He will be deeply missed. 010
Reposted by Cole J. BattyEliver Ghosn @eliverghosn.bsky.social · 04/04/2025We are #Hiring! Please share! #ImmunoSky 🧪 Join our multi-disciplinary B-cell team @Emory/ATL to lead exciting projects on human immunology funded by the Gates Foundation and the NIH (Position fully funded and not dependent on future grants). ghosnlab.science/join-us #BYourCell 11012
Reposted by Cole J. BattyWaggoner Lab @labwaggoner.bsky.social · 02/04/2025Two distinct durable human class-switched memory B cell populations are induced by vaccination and infection @cp-cellreports.bsky.social www.cell.com/cell-reports... 061
Reposted by Cole J. BattyDavide Angeletti @angelettilab.bsky.social · 25/03/2025Our latest study by PhD student #RomainGailleton shows that upon #influenza infection, #Bcell can respond rapidly by forming ectopic #GerminalCenter within the nasal tissue. The work has just been published in @pnas.org (1/N) www.pnas.org/doi/10.1073/...pnas.orgEctopic germinal centers in the nasal turbinates contribute to B cell immunity to intranasal viral infection and vaccination | PNASThe nasal mucosa is the first immunologically active site that respiratory viruses encounter and establishing immunity at the initial point of path... 34912
Reposted by Cole J. BattyBrian Space @brianspace.bsky.social · 08/03/2025@labonnelab.bsky.social overcast.fm/+AA5AWObyBF8 What an unbelievably great appearance with amazing focus and insight by Professor LaBonne. Thank you so much!overcast.fmTrump’s NIH Cuts Send Shockwaves Through the Science World — Odd Lots 082
Cole J. Batty @colebatty.bsky.social · 05/03/2025I'm happy to have played a small part in this first paper from an ongoing collaboration between the Marasco, Sage, Haigis, and Hemberg labs to decipher mechanisms of poor influenza vaccine response in older individuals 040
Reposted by Cole J. BattyImmunity @cp-immunity.bsky.social · 28/02/2025Online now: Online now: Early influenza virus exposure shapes the B cell response to influenza vaccination in individuals 50 years laterdlvr.itEarly influenza virus exposure shapes the B cell response to influenza vaccination in individuals 50 years laterTo understand the influence and longevity of early influenza imprinting, Spangler et al. investigate the response to an H2 HA vaccine in individuals with and without exposure to H2N2 virus 50 years ago. They find that those with prior exposure have a… 032
Reposted by Cole J. BattyBrian Stevenson Ph.D. spirochete lab @bstevensonlab.bsky.social · 27/02/2025The NIH funding freeze has blocked 3 of our grant proposals (so far), which threatens to shut down our Lyme disease research program within a year. 🦠🧫🧪🧬🔬 #MicroSky www.reuters.com/business/hea...reuters.comTrump administration loophole snags US research grants from Lyme to lung diseaseThe Trump administration has for weeks been blocking the U.S. National Institutes of Health process for issuing new research grants for everything from Lyme disease to lung and heart disease, according to researchers, a departing NIH official and documents. 38262
Reposted by Cole J. BattyScott Delaney @scott-delaney.bsky.social · 21/02/2025NIH indirects case update: Hearing ongoing now, and I'll try to live tweet some notable exchanges. Prior to more detailed arguments, Judge Kelley starts off with a few point questions to both sides: (I'm paraphrasing here) 14347196
Reposted by Cole J. BattyStand Up for Science! @standupforscience.net · 20/02/2025☀️📣 Looking for a STATE LEAD and VOLUNTEERS to help us #standupforscience2025 in North Carolina! Know someone interested? Fill out this form: airtable.com/app4h5wUssMG... #scienceforall #sciencenotsilence 12921
Reposted by Cole J. BattyThe Transmitter @thetransmitter.bsky.social · 18/02/2025A large portion of grants awarded by the U.S. National Institutes of Health cannot be funded for the foreseeable future because of an indefinite hold on submissions to the Federal Register, according to an email reviewed by The Transmitter. By @avaskham.bsky.social bit.ly/3X8ngz8thetransmitter.orgFederal Register hold makes ‘end run’ around court pause on NIH funding freezeNIH-related updates to the Federal Register, which are required for the scheduling of study sections and advisory councils, are on hold indefinitely, according to an email reviewed by <i>The Transmitt... 12350326
Reposted by Cole J. BattyJeremy Berg @jeremymberg.bsky.social · 15/02/2025ATTENTION (PLEASE SHARE) If anyone has or knows of any positions that might be appropriate for the NIH staff members who were terminated, please post the information in this thread. There are lots of talented and accomplished people who may be looking for new opportunities.media.tenor.coma poster that says if life gives you lemon make lemonade on itALT: a poster that says if life gives you lemon make lemonade on it 92514446
Reposted by Cole J. BattyCorey Watson @cdubsig.bsky.social · 13/02/2025Did you know that human immunoglobulin constant genes are crazy diverse? It's got me thinking...Proud of Uddalok Jana! And grateful for collabs @guryaari.bsky.social @williamlees.bsky.social @ayeletperes.bsky.social @e-engelbrecht1.bsky.social @yscientist.bsky.social www.biorxiv.org/content/10.1...biorxiv.orgThe human immunoglobulin heavy chain constant gene locus is enriched for large complex structural variants and coding polymorphisms that vary in frequency among human populationsThe immunoglobulin heavy chain constant (IGHC) domain of antibodies (Ab) is responsible for a variety of effector functions critical to Ab mediated immunity. In human, this domain is encoded by genes ... 02816
Reposted by Cole J. BattyAndy Fraser @andyfraser.bsky.social · 04/02/2025Delighted to share our latest paper describing a method to read the levels of hundreds of metabolites or drugs in parallel using DNA sequencing. This method, which we call ‘smol-seq’ (Small MOLecule sequencing), harnesses the power of DNA sequencing for metabolite detection: rdcu.be/d8xLv (1/6)rdcu.beQuantifying metabolites using structure-switching aptamers coupled to DNA sequencingNature Biotechnology - Metabolites can be quantified using a combination of aptamers and DNA barcodes. 1115962
Reposted by Cole J. BattyAlexander Dent @follicular.bsky.social · 01/02/2025Absolutely fascinating story showing different functions for CD4 vs CD8 regulatory cells in humoral immunity and the role of Foxp3 vs Granzyme B. #ImmunoSky #GCBcellSky #TfhSky www.nature.com/articles/s41...nature.comDifferential roles of human CD4+ and CD8+ regulatory T cells in controlling self-reactive immune responses - Nature ImmunologyHere the authors use a tonsil organoid culture model system to investigate the roles of human CD4+ and CD8+ regulatory T cells in controlling self-reactive immune responses. CD4+ regulatory T cells we... 0246
Reposted by Cole J. BattyIzabella A. Pena, PhD 🇧🇷🇨🇦 @izabellapena.bsky.social · 25/01/2025Here is a quick thread to promote my research! After years of dedicated research, I'm thrilled to share our article just published at Nature Communications :) www.nature.com/articles/s41... #metabolism #CRISPRscreens #mitochondrianature.comSLC25A38 is required for mitochondrial pyridoxal 5’-phosphate (PLP) accumulationNature Communications - Pyridoxal 5’-phosphate (PLP, vitamin B6) is crucial for various metabolic processes. Here, the authors identified SLC25A38 as a key regulator of mitochondrial PLP... 1834755