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Angela Juhasz

@angijuhasz.bsky.social
440 followers 1.1K following 5 posts

Proteogenomics, computational biology, network biology, regulatory programs in seeds, food allergy, epitopes, bioactive peptides, edible grains. A/Prof at Edith Cowan University.

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Reposted by Angela Juhasz
Robert Aboukhalil @robert.bio · 06/08/2026
I can't believe it's already been 5 years since I first released sandbox.bio! 🥳 To celebrate, next week we'll release one new feature every day of the week. Follow along at sandbox.bio/anniversary, or here on BlueSky.
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Albert Vilella, PhD. @albertvilella.bsky.social · 29/07/2026
I did not have this in my bingo card this year: "DeepMind dismantles AlphaFold team in strategy shift" #Alphafold #AI #Biotech #DeepMind
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Australian BioCommons @ausbiocommons.bsky.social · 30/07/2026
New case study from @seqera.io @nextflow.io 🧬💻 Showcasing how @ausbiocommons.bsky.social standardises #bioinformatics & scales #compute alongside @pawseycentre.bsky.social @nci-australia.bsky.social Now supporting 340+ researchers across 40+ Aussie organisations. Read more 🔗
biocommons.org.au
Scaling bioinformatics and compute access for Australian molecular science research — Australian BioCommons
Seqera has released a new case study featuring Australian BioCommons: Australian BioCommons Standardizes Bioinformatics and Scales Compute Access Nationwide with Seqera.
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Maite Colinas @maitecolinas.bsky.social · 30/07/2026
#PlantScience
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Aline Probst @alineprobst.bsky.social · 02/07/2026
Have you ever wondered how the epigenome is modified during the transition from seed to seedling? Here, we show that water uptake by Arabidopsis seeds triggers the eviction of the H2B variant H2B.8, thereby revealing replication-independent chromatin reprogramming. www.nature.com/articles/s41...
nature.com
Replication-independent eviction of the histone variant H2B.8 reveals chromatin reprogramming during seed imbibition - Nature Communications
The transition from seed to seedling requires chromatin reprogramming. By studying the histone variant H2B.8, the authors show that it organizes silent chromatin in dry seeds and reveal that water upt...
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Scott Boden @scottboden.bsky.social · 18/06/2026
We’re excited to share out wheat spatial transcriptomics paper, published today in Science Advances - url.au.m.mimecastprotect.com/s/zvF1C0YKzm...
url.au.m.mimecastprotect.com
Spatial transcriptomics identifies distinct domains regulating yield-component traits of the wheat ear
Mapping gene activity in the wheat ear reveals domains that regulate spikelet number and yield potential.
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Plantae.org @plantaeofficial.bsky.social · 12/06/2026
#JustIn on Plantae: Beyond AlphaFold: The Technologies Waiting to Change Plant Science. In this new piece, ASPB Plantae Fellows Charlay Wood, Ruth Nichols, and Sonia Balyan explore the next wave of technologies waiting to transform plant science. buff.ly/uRnlgKu #PlantScience
buff.ly
Beyond AlphaFold: The Technologies Waiting to Change Plant Science | Plantae
There is probably not a plant scientist on the planet who has not heard of AlphaFold (Jumper et al., 2021). Many of you reading this have likely used it. What began as DeepMind’s attempt to apply…
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Abiotic Stress in Plants @abioticstress.bsky.social · 12/06/2026
#Stress resilience in plants: the complex interplay between #heat stress #memory & resetting nph.onlinelibrary.wiley.com/doi/full/10.... #PlantScience @newphyt.bsky.social @wileylifesci.bsky.social @sciplant.bsky.social @plantstress.bsky.social @plant-sci.bsky.social @plantscientist01.bsky.social
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Australian BioCommons @ausbiocommons.bsky.social · 05/06/2026
World-leading Aussie science fighting #AntimicrobialResistance! PhD student George Bouras added 17M bacterial protein predictions to the #AlphaFold database. This was made possible by a partnership between BioCommons & @pawseycentre.bsky.social to containerise #ColabFold on Setonix. Read more 🔗
biocommons.org.au
World-leading Australian science: 17M protein structures added to the AlphaFold Database to accelerate the fight against antimicrobial resistance  — Australian BioCommons
Australian researcher, George Bouras, has recently contributed an extraordinary 17 million protein predictions to the AlphaFold Protein Structure Database. This work was possible thanks to the availability of the ColabFold tool on Setonix AMD, the result of collaboration between BioCommons and the P
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Simon Kuestenmacher @simongerman600.bsky.social · 18/05/2026
When the world gets you down, just remember the wonderful variety of dumplings out there...
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Maxim Greenberg @maxvcg.bsky.social · 01/05/2026
This a very important, and extremely well-executed study from Ralph Grand’s group @uniheidelberg.bsky.social. Congrats to all the authors! www.biorxiv.org/content/10.6...
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Helen Alexander @bawley.bsky.social · 25/04/2026
Blue Mountains. NSW. Australia 🌏
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c0nc0rdance @c0nc0rdance.bsky.social · 18/04/2026
This is Achrioptera manga, a giant phasmid or stick insect native to Madagascar. The specific epithet, "manga" means blue in Malagasy & it's not hard to see why. Only males are blue. The tiny back wings ("alae") are an example of brachyptery: they're useless for flight, but have other functions.
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Monica Morrill @mmorrillart.bsky.social · 15/04/2026
This is a small painting I made several years ago after visiting Algonquin Provincial Park in Ontario Algonquin Sunset 12x12 acrylic on canvas
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USA @usamailbox.bsky.social · 11/04/2026
#StreetArt "Three Cages" by the French artist Julien Malland, known as Seth Globepainter. in #Amman, #Jordan
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Nicolas Robert @robertsnickc.bsky.social · 10/04/2026
‘Dame Jane Goodall.’ #Painting by Wendy Barratt #art
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John Innes Centre @johninnescentre.bsky.social · 08/04/2026
We are devastated to announce that our colleague and friend Professor Philippa Borrill died over the Easter weekend following a rare immune system disorder (HLH). She was a fantastic scientist, collaborator and mentor, and a close friend to many: www.jic.ac.uk/news/profess...
Professor Philippa Borrill
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Kurbs @kkurbs.bsky.social · 06/04/2026
A beef Wellington is just a corn dog from a different socioeconomic background
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Pablo Saavedra Garfias @dunklewolke.bsky.social · 21/03/2026
“most people have been educated in empathy and respect, but sometimes I wonder if we’ve been educated in inclusion”... Important considerations to take into #science #AcademicSky. Handy hints for upcoming conference #EGU26 🧪❄️🎢⚒️🌊
nature.com
Colour me better: fixing figures for colour blindness
Images can be made more accessible by choosing hues, shapes and textures carefully.
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Galaxy Project @galaxyproject.bsky.social · 11/03/2026
Happy #BioinformaticsDay! Today, we celebrate the scientists and tools that turn biological data into discovery, and honor pioneers like Margaret Dayhoff, who helped lay the foundations of modern bioinformatics. Here’s to the community advancing data-driven biology!
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Appendix N Entertainment @appendixn.bsky.social · 04/03/2026
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Wei Shen 沈 伟 @shenwei356.bsky.social · 27/02/2026
Can't wait to release a 10-year-old birthday version for SeqKit! - 10 years - 2 papers, 3500 citations - 20 contributors - 40 subcommands - 880 commits - 500 issues - 685.5K Bioconda total downloads Thank you all, dear contributors and users! I'll keep maintaining it. github.com/shenwei356/s...
github.com
Release SeqKit v2.13.0 (10-year-old birthday version) · shenwei356/seqkit
Changelog SeqKit is 10 years old! SeqKit v2.13.0 - 2026-02-28 seqkit: add support for reading and writing LZ4 compression format. new command: seqkit sample2: improved seqkit sample by @stahiga....
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Jörg-Peter Schnitzler @jpschnitzler.net · 17/02/2026
#ThickTrunkTuesday Walk through the forests to the iconic „Knightwood oak“ - „The Queen of the forests“, Lyndhurst, New Forest, UK a 500-600+ year old pedunculate oak. #trees ##photography #nature
A massive oak tree standing in a forest light gap surrounded by a fence.
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John Innes Centre @johninnescentre.bsky.social · 04/02/2026
We made the front cover of @theplantcell.bsky.social! Huge congratulations to co-first authors @katielong.bsky.social and Ashleigh Lister, corresponding author @cristobaluauy.bsky.social and everyone at JIC, @earlhaminst.bsky.social and @vizgen.bsky.social who collaborated on this exciting work 👏
January 2026, The Plant Cell cover
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edgardemesa.bsky.social @edgardemesa.bsky.social · 08/01/2026
It's finally out!... Using single-cell and spatial transcriptome data, and data imputation, we created BARVISTA, a website able to perform almost genome-wide information on gene expression profiles at single-cell resolution in barley spikes! www.nature.com/articles/s41...
nature.com
Imputation integrates single-cell and spatial gene expression data to resolve transcriptional networks in barley shoot meristem development - Nature Plants
Spatially resolved gene expression during barley development was done by integrating an scRNA-seq dataset from cells with unknown position with spatial transcriptomics. This dataset is publicly availa...
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Andreas P.M. Weber 🌾🌱🧬 @apmweber.bsky.social · 08/01/2026
BARVISTA visualises gene expression in the barley shoot apical meristem with single-cell resolution @edgardemesa.bsky.social @usadellab.bsky.social @simonrdg.bsky.social @isaiavardanega.bsky.social @plantgen-hhu.bsky.social @hhu.de @ceplas.bsky.social www.plabipd.de/projects/han...
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Hajk-Georg Drost @hajkdrost.bsky.social · 08/01/2026
Explore gene expression evolution across organs in seven flowering plant species via our interactive atlas: 🖥️ DevSeq Plant WebApp 👉 www.devseqplant.org/index.php 📂 All datasets are openly available for reuse and reanalysis: 👉 github.com/schustischus...
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Hajk-Georg Drost @hajkdrost.bsky.social · 07/01/2026
🧵 Just out in Cell after more than 10 years in the making! 🎓 www.cell.com/cell/fulltex... Plants and animals evolve radically different body plans. Do they also operate under fundamentally different molecular evolutionary constraints during organ formation? @cellpress.bsky.social
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Angela Juhasz @angijuhasz.bsky.social · 29/12/2025
theconversation.com/emma-johnsto...
theconversation.com
Emma Johnston was a visionary scientist, environmentalist and leader, with an abiding hope for humanity
The University of Melbourne Vice-Chancellor, who has died aged 52, was driven by a deep love of science and a desire to safeguard the planet’s future.
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The Arabidopsis Information Resource (TAIR) @tairnews.bsky.social · 18/12/2025
It's our birthday! Twenty-five years ago, in December 2000, the Arabidopsis thaliana genome was published and #TAIR was born. Now, we're preparing for the release of #TAIR12 early in the new year. What a long way we've come! bit.ly/3KDJciT #plantbiology #plantscience #genomics #Arabidopsis
bit.ly
Get ready: TAIR12 is coming - Phoenix Bioinformatics
More than two years ago, TAIR took the lead in a volunteer-driven project to reannotate the Arabidopsis thaliana genome
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New Phytologist @newphyt.bsky.social · 04/12/2025
#Seagrasses are most vulnerable to #marine #heatwaves in #tropical #zones: local‐scale and broad climatic zone variation in thermal tolerances 📖 nph.onlinelibrary.wiley.com/doi/10.1111/... by Said et al. @WileyPlantSci #PlantScience
Graphical abstract showing three stage model including vulnerability assessment, thermal optima and resilience building.
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Matt "Kupo" Roszak 🌻🍉 Wishlist Find Matt's Cats! @kupogames.bsky.social · 25/11/2025
Sometimes the best way to progress is to delete all the code I wrote today and start it again.
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Mann Lab @mannlab.bsky.social · 25/11/2025
Honored to be included in this reflection on 20 excellent years of MolSystBiol! From our first phosphotyrosine interactome in 2005 to proteome-wide networks - scale has grown exponentially. MS proteomics + AI is transforming systems-level understanding. Exciting times! embopress.org/doi/pdf/10.1...
embopress.org
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David Aerne @meodai.bsky.social · 23/11/2025
If you’re still hunting for color tools, I’m working on a more user-friendly version of meodai.github.io/poline/ keeping you huedrated
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Oded Rechavi @odedrechavi.bsky.social · 14/11/2025
Can we all agree to write all the grants in the first semester so we can do other things during the second semester?
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UW Genome Sciences @uwgenome.bsky.social · 12/11/2025
Congratulations to Mike MacCoss on receiving the Donald F. Hunt Distinguished Contribution in Proteomics Award from US HUPO! us-hupo.org/Distinguishe...
us-hupo.org
US HUPO - Distinguished Contribution Award
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Oded Rechavi @odedrechavi.bsky.social · 06/11/2025
Please read the thoughtful Blog that @richardsever.bsky.social and the @openrxiv.bsky.social team wrote on integrating pre-prints with AI review openrxiv.org/enabling-rev...
openrxiv.org
Enabling options for review: from training and transparency to author-centered AI tools - openRxiv
Peer review is widely viewed as a critical aspect of biomedical communication. Ideally, it provides authors with feedback so they can improve manuscripts and gives readers, particularly nonspecialists...
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Fillip Port @crisprflydesign.bsky.social · 06/11/2025
🤯This is wow! Molecular mechanism of mRNA export. by @juliusbrennecke.bsky.social @plaschkalab.bsky.social www.nature.com/articles/s41...
Illustration of the molecular mechanism controlling mRNA export.
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Nature @nature.com · 31/10/2025
Nature research paper: A pangenome and pantranscriptome of hexaploid oat go.nature.com/47OSVvb
go.nature.com
A pangenome and pantranscriptome of hexaploid oat - Nature
A pangenome of oat, assembled from 33 wild and domesticated oat lines, sheds light on the evolution and genetic diversity of this cereal crop and will aid genomics-assisted breeding to improve productivity and sustainability.
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Jeffrey Ross-Ibarra @jrossibarra.bsky.social · 21/10/2025
Lunch today halfway around the world in Hangzhou and met a new asst professor who was very thankful for this resource. Please help out folks like them and other early career scientists with examples of job apps. Submit yours! github.com/RILAB/statem...
github.com
GitHub - RILAB/statements: Successful Job Applications and Grants
Successful Job Applications and Grants. Contribute to RILAB/statements development by creating an account on GitHub.
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The Guardian @theguardian.com · 09/10/2025
Nobel prize in literature 2025 live: Hungarian novelist László Krasznahorkai wins
theguardian.com
Nobel prize in literature 2025 live: László Krasznahorkai wins
Follow along as the next winner of the world’s most prestigious literature prize is announced in Stockholm
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Matt Padula @mattpadula.bsky.social · 08/10/2025
I'll just leave this here: jocnf.pubpub.org/pub/qag76ip8...
jocnf.pubpub.org
Principles for proper peer review
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Angela Juhasz @angijuhasz.bsky.social · 06/10/2025
Our pan-gtranscriptome analysis delivers a detailed roadmap for gene expression and regulation promising to fuel innovations in crop improvement to face climate challenges. www.nature.com/articles/s41... @earlhaminst.bsky.social @helmholtzmunich.bsky.social @edithcowanuni.bsky.social
nature.com
De novo annotation reveals transcriptomic complexity across the hexaploid wheat pan-genome - Nature Communications
Available wheat genomes are annotated by projecting Chinese Spring gene models across the new assemblies. Here, the authors generate de novo gene annotations for the 9 wheat genomes, identify core and dispensable transcriptome, and reveal conservation and divergence of gene expression balance across homoeologous subgenomes.
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Angela Juhasz @angijuhasz.bsky.social · 06/10/2025
Happy to share our wheat pan-transcriptome paper published in Nature Communications. @helmholtzmunich.bsky.social @earlhaminst.bsky.social @edithcowanuni.bsky.social
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Earlham Institute @earlhaminst.bsky.social · 06/10/2025
📃 New research published today in @natcomms.nature.com from the Earlham Institute and @helmholtzmunich.bsky.social presents the first wheat pan-transcriptome - revealing layers of hidden diversity spanning our modern wheat variations. 🧪 ➡️ buff.ly/ZDIRnFW @wheatinitiative.bsky.social @ukri.org
buff.ly
New wheat diversity discovery could provide an urgently-needed solution to global food security
Newly-discovered diversity in the wheat genome could offer vital new opportunities to improve and ‘climate-proof’ one of the world’s most important staple crops.
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Anthony Hall @ajwhall.bsky.social · 06/08/2025
It's great to see you PHD takeoff and what a way to fly, read @c-reynoldsuk.bsky.social first paper from his PHD www.nature.com/articles/s41... It is also a nice collaboration with Ant Dodd at the JIC @antdodd.bsky.social @nrpdtp.bsky.social @earlhaminst.bsky.social @johninnescentre.bsky.social
nature.com
Machine learning models highlight environmental and genetic factors associated with the Arabidopsis circadian clock - Nature Communications
The authors introduce ChronoGauge as a machine learning model which can estimate a plant’s internal circadian time using gene expression. This can be used to compare the circadian clock across differe...
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Nicola Rennie @nrennie.bsky.social · 18/10/2024
I've recently started compiling a list of data science related resources that I use or recommend frequently! 📊 Link: nrennie.rbind.io/data-science... #RStats #Python #DataViz #DataScience
Screenshot of the Data Science resources website showing a list of blogs at the top of the site.
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Nature Biotechnology @natbiotech.nature.com · 25/07/2025
A resource of RNA-binding protein motifs across eukaryotes reveals evolutionary dynamics and gene-regulatory function go.nature.com/4mc1SmQ
go.nature.com
A resource of RNA-binding protein motifs across eukaryotes reveals evolutionary dynamics and gene-regulatory function - Nature Biotechnology
RNA-binding motifs in eukaryotic proteins are presented in a comprehensive resource.
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Liza Adamczewski aka the accidental ecologist @lizaadamczewski.bsky.social · 10/07/2025
This is the next little hand made book I wrote & illustrated. It’s for my son, who was fascinated by insects & creeping crawling things. Woodlice have so many different colloquial names that I’m sure I could add many more to it in a finished edition. Sound up full & apologies for whispering
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