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Alisa 愛理沙

@alisaiakupova.bsky.social
189 followers 344 following 63 posts

PhD student studying structural variants in allergy @mdc-berlin.bsky.social 🥜 & long reads enthusiast. Moscow State & Univ of Groningen alumna

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Alisa 愛理沙 @alisaiakupova.bsky.social · 03/10/2026
"The immune system is vastly more complex than any single investigator’s intuition can encompass." 🤔
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Richard Lenski @relenski.bsky.social · 22/09/2026
"Philosophy of Biology: The power of theory in the life sciences" elifesciences.org/articles/112... @zdblount.bsky.social shared this thought-provoking paper with the lab group.
elifesciences.org
Philosophy of Biology: The power of theory in the life sciences
Theory can help address cell and molecular biology’s major challenges, particularly those arising from large omics datasets.
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Science Magazine @science.org · 10/08/2026
A phase 1 trial decrypts how fecal microbiome transplants can raise tolerance to peanut antigens by triggering higher amounts of RORγt+ regulatory T cells, sustaining Bacteroides colonization, and increasing bile acid metabolites. #ScienceTranslationalMedicine scim.ag/3RYErUt
scim.ag
Fecal microbiome transplant in food allergy in humans and mice identifies a role for bile acid metabolites in oral tolerance
Fecal microbiome transplant up-regulates immune tolerance pathways in food allergy.
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Alisa 愛理沙 @alisaiakupova.bsky.social · 16/09/2026
wtf Elsevier again @elsevierconnect.bsky.social www.sciencedirect.com/science/arti...
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Waggoner Lab @labwaggoner.bsky.social · 31/07/2026
Gut microbial composition modulates endogenous food-specific CD4+ T cells in food allergy @jimmunol.bsky.social academic.oup.com/jimmunol/art... @alexaweingarden.bsky.social @cfi-umn.bsky.social
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Daniel Croll @danielcroll.bsky.social · 04/09/2026
Our lab is looking for PhD students to join us in 2027 🎓🎉 The projects can be structured around our research directions: - Transposable element dynamics - Fungal pangenomics - ML/language model genomics applications - Pathogen adaptation More here pathogen-genomics.org ("Jobs") and please share! 🙏
pathogen-genomics.org
Evolutionary genomics of pathogens
Croll lab at University of Neuchatel. The lab of Daniel Croll wants to understand how pathogens evolve to cause disease. For this, we mainly focus on major crop pathogens to unravel mechanisms of rapi...
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Science Magazine @science.org · 21/07/2026
Macrophages produce metabolites that recruit immunosuppressive T helper 2 cells to fungal infection sites in the lungs, finds new #ScienceImmunology research in mice. The results provide insight into cues that induce immune responses that could prevent fungal clearance. scim.ag/3RcC7Jl
scim.ag
Macrophage-derived oxysterols organize T helper 2 cells to suppress type 1 inflammation during pulmonary fungal infection
Macrophage-derived oxysterols recruit GPR183+ TH2 cells into fungal lesions, suppressing type 1 immunity and promoting pathogen persistence.
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Adam Ameur @adameur.bsky.social · 20/08/2026
🎉Our review on the use of long-read sequencing in tandem repeat disorders is out!🧬💻 Grateful to be part of this team effort. We're only starting to understand the role of repeats in human disease and long-reads will help unlock future discoveries www.nature.com/articles/s41...
nature.com
Toward the clinical application of long-read sequencing in repeat-expansion disorders - Nature Genetics
This Perspective by the LRS-RED consortium discusses methodological, bioinformatic and diagnostic advances in long-read sequencing (LRS) for repeat-expansion disorders, highlighting the potential of L...
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Caetano Reis e Sousa @reisesousalab.bsky.social · 19/08/2026
Hope you enjoy this short piece, which came out yesterday. Some thoughts I’ve been musing on for a while about why adaptive immunity evolved. Read it for free at rdcu.be/fAO5P
rdcu.be
Why adaptive immunity?
Nature Reviews Immunology - Adaptive immunity is indispensable to vertebrates, yet most living organisms defend themselves perfectly well without it. Here, I ask why somatically diversified antigen...
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Center for Cancer Immunotherapy and Immunobiology @ccii-kyoto.bsky.social · 31/07/2026
The high level of heterogeneity of immune cells, (Kenji Chamoto) says, “is likely an eternal challenge in immunology.”'
nature.com
What’s your name, immune cell? - Nature Methods
Groups of immunologists are advancing recommendations to address nomenclature challenges in their subfields.
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Alisa 愛理沙 @alisaiakupova.bsky.social · 14/07/2026
when I read this my first thought was “oh, he was 26 and could afford a family” … …… ……… anyway, sad and agree with Zohran
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Alisa 愛理沙 @alisaiakupova.bsky.social · 29/06/2026
the joy of discussing ARCHAEA and mucosal immunity today at @mdc-berlin.bsky.social w/ Paul Klenerman and Katja Simon👏
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Alisa 愛理沙 @alisaiakupova.bsky.social · 24/06/2026
We will have this event also on October 5th and December 3rd. Save the dates! I am sad I will have to stop organizing the MDC immunology community because my PhD contract is over (but I don't know if I will be allowed to defend -- long story) 😞
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Nature Reviews Immunology @natrevimmunol.nature.com · 16/06/2026
Nuclear STING compromises replication fidelity
dlvr.it
Nuclear STING compromises replication fidelity
Nature Reviews Immunology, Published online: 15 June 2026; doi:10.1038/s41577-026-01324-zA preprint by Teodoro-Castro et al. reports a nuclear role for STING in impairing DNA replication and contributing to replication stress in ageing pathologies.
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Alisa 愛理沙 @alisaiakupova.bsky.social · 02/06/2026
Gut-derived, inflammatory ILC2s disseminate type 2 immunity to remote lung in food allergen–challenged mice academic.oup.com/jleukbio/art... @jlbjournal.bsky.social
academic.oup.com
Gut-derived, inflammatory ILC2s disseminate type 2 immunity to remote lung in food allergen–challenged mice
Duodenum-localized IL-25–inflammatory type 2 innate lymphoid cells axis disseminates type 2 immunity to remote lung in a mouse food allergy model.
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Alisa 愛理沙 @alisaiakupova.bsky.social · 30/05/2026
😍
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Waggoner Lab @labwaggoner.bsky.social · 16/04/2026
Intestinal dysbiosis exacerbates skin inflammation via microbial metabolite-driven Th2 cell differentiation www.cell.com/immunity/ful... @cp-immunity.bsky.social
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bioRxivpreprint @biorxivpreprint.bsky.social · 13/05/2026
Early-life mucosal T cells direct intestinal stem cell fate via a coordinated developmental program www.biorxiv.org/content/10.64898/20…
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bioRxiv Developmental Biology @biorxiv-devbio.bsky.social · 07/05/2026
Modeling human B cell development with pluripotent stem cells www.biorxiv.org/content/10.64898/20…
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EFIS_Immunology @efis-immunology.bsky.social · 12/05/2026
📣EFIS - Immunology Letters Study Group “T Cell Connect Europe” Monthly Immunology Lecture Series focusing on #Tcellbiology and T cell-mediated immunity! 💡Two 25 minute lectures + 10 minutes discussion 📅Next lecture: June 2, 2026. 🎙️Presenters: Axel Kallies & Adrian Hayday. 🔗 www.t-cells.eu
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bioRxiv Genetics @biorxiv-genetic.bsky.social · 14/04/2026
Resolution of the D4Z4 repeat responsible for facioscapulohumeral muscular dystrophy with HiFi sequencing www.biorxiv.org/content/10.64898/20…
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Charlie Evavold @synth-immune.bsky.social · 22/04/2026
Check out the latest from Eric Dang's lab. @ragoninstitute.bsky.social @harvardmed.bsky.social @jem.org @rupress.org rupress.org/jem/article-...
rupress.org
Alternatively activated monocyte-derived myeloid cells promote extracellular pathogen persistence in pulmonary fungal granulomas
During latent pulmonary cryptococcal infection, Zheng et al. show that TH2-driven STAT6 signaling in monocyte-derived myeloid cells suppresses extracellula
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Trends in Immunology @cp-trendsimmuno.bsky.social · 18/03/2026
Molecular mechanisms of type 2 innate immune sensing #immunology
dlvr.it
Molecular mechanisms of type 2 innate immune sensing
Type 2 immunity protects against helminths and venoms, yet its dysregulation drives allergic diseases. Initiation occurs at barrier tissues, where epithelial cells detect perturbations and release alarmins, activating type 2 innate lymphoid cells and conditioning dendritic cells for T helper 2 priming. However, the framework of type 2 innate immune sensing remains largely incomplete. Critical gaps include the core immunostimulatory components of many stimuli and their host detection pathways. Recent advances, including tuft cell chemosensation, membrane pore formation as a common trigger, and the role of protein crystals and proteases in allergic inflammation, highlight emerging molecular principles. Unlike bacterial, viral, and fungal recognition via conserved molecular patterns, type 2 immunity often involves the sensing of perturbations and stress signals.
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Adlung Lab @adlunglab.com · 03/04/2026
Start Good Friday right: With intestinal tuft cells that refresh immune memory to prepare for parasite re-infection by Jakob von Moltke in Immunity www.cell.com/immunit... 🧪
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Alisa 愛理沙 @alisaiakupova.bsky.social · 02/04/2026
Differential effects of subcutaneous and sublingual immunotherapy on timothy grass–specific TH2 CD4+ T-cell subsets - Journal of Allergy and Clinical Immunology www.jacionline.org/article/S009...
jacionline.org
Differential effects of subcutaneous and sublingual immunotherapy on timothy grass–specific TH2 CD4+ T-cell subsets
Allergen-specific CD4+ T cells are a highly heterogenous population. Depletion of these cells has been proposed as essential to achieve allergen desensitization in allergen immunotherapy.
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Alisa 愛理沙 @alisaiakupova.bsky.social · 01/04/2026
@mdc-bimsb.bsky.social
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Alisa 愛理沙 @alisaiakupova.bsky.social · 20/03/2026
it’s humiliating that a visa rejection mentions “not enough family ties” = “not married” when you are applying for a scientific conference 🙂🇨🇦
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medRxivpreprint @medrxivpreprint.bsky.social · 12/02/2026
Benchmarking HLA genotyping from whole-genome sequencing across multiple sequencing technologies www.medrxiv.org/content/10.64898/20…
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Alisa 愛理沙 @alisaiakupova.bsky.social · 18/03/2026
👀
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bioRxiv Genomics @biorxiv-genomic.bsky.social · 01/02/2026
TandemTwister: Scalable genotyping and advanced visualization of tandem repeats www.biorxiv.org/content/10.64898/20…
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Alisa 愛理沙 @alisaiakupova.bsky.social · 24/02/2026
I’m an organizer 🌚
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bioRxiv Immunology @biorxiv-immuno.bsky.social · 14/02/2026
TCR signal strength determines Treg instability and discrimination of self versus non-self antigens www.biorxiv.org/content/10.64898/20…
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Max Delbrück Center @mdc-berlin.bsky.social · 06/02/2026
Registration now open for the I&I Berlin Symposium 2026! Are you part of Berlin’s immunology community or planning to become one? On March 17, 2026, the symposium bringing together researchers, clinicians, & early-career scientists working on immunology and inflammation.
Group photo
Text: Immunology & Inflammation Symposium
Berlin
Mar 17, 2026
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Alisa 愛理沙 @alisaiakupova.bsky.social · 06/02/2026
I don’t what that it is, maybe a (post)soviet education, but we think in the same direction 🤣
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Alisa 愛理沙 @alisaiakupova.bsky.social · 04/02/2026
You probably know that Berlin has many outstanding research groups working in #immunology. We’re bringing this community together for a one-day symposium on March 17th. Please register if you’re curious about Berlin science! 🧬🧯🔥 #immunosky #medsky www.mdc-berlin.de/news/events/...
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Nature Reviews Immunology @natrevimmunol.nature.com · 30/01/2026
by Leon Baronijan & Alberto Martin
nature.com
Germinal centre IL-4 enforces tissue confinement of IgE memory - Nature Reviews Immunology
A preprint by Villazala-Merino et al. shows that allergen-specific memory B cells must re-enter germinal centres to differentiate into IgE-producing plasma cells, which occurs in lymph nodes but not a...
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Alisa 愛理沙 @alisaiakupova.bsky.social · 23/01/2026
*maybe*
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bioRxivpreprint @biorxivpreprint.bsky.social · 04/12/2025
Il33 expressing cDC2s promote expansion of ILC2s and eosinophilia in fungal airway inflammation in male mice www.biorxiv.org/content/10.64898/20…
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medRxivpreprint @medrxivpreprint.bsky.social · 08/12/2025
Targeted long-read sequencing enables comprehensive analysis of the genetic and epigenetic landscape of inherited myopathies www.medrxiv.org/content/10.64898/20…
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Richard Sever @richardsever.bsky.social · 12/01/2026
Preprints of pandemic potential - new historical piece from me on the history of bioRxiv/medRxiv, their role in the pandemic, and the way forward. 1/n journals.asm.org/doi/10.1128/...
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Nature @nature.com · 08/01/2026
Nature research paper: Insights into DNA repeat expansions among 900,000 biobank participants go.nature.com/49mB0f6
go.nature.com
Insights into DNA repeat expansions among 900,000 biobank participants - Nature
Human genetic variation influences instability of DNA repeats that commonly expand as we age.
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Alisa 愛理沙 @alisaiakupova.bsky.social · 07/01/2026
🌚
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Immunology Podcast @immunologypodcast.com · 19/12/2025
An experimental vaccine against IgE protects against #anaphylaxis in humanized mice! Read the @science.org paper from a team at @pasteur.fr: bit.ly/4s35z1L Listen to the discussion on our latest episode: bit.ly/44Ay1OG
bit.ly
A vaccine targeting human IgE induces long-term protection against anaphylaxis in humanized mice
A conjugate vaccine targeting human IgE induces long-term production of neutralizing antibodies and protects against anaphylaxis in humanized mice.
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bioRxiv SysBio @biorxiv-sysbio.bsky.social · 14/12/2025
Multi-omics analysis reveals vitamin D metabolism, hyper-IgE genes, and epithelial barrier dysfunction in hazelnut allergy www.biorxiv.org/content/10.64898/20…
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Waggoner Lab @labwaggoner.bsky.social · 12/12/2025
Single-cell transcriptomics resolves mononuclear phagocyte diversity in the human intestine in health and inflammatory bowel disease @sciimmunology.bsky.social www.science.org/doi/10.1126/...
science.org
Heterogeneity of the intestinal mononuclear phagocyte compartment in health and inflammatory bowel disease
Single-cell transcriptomics resolves mononuclear phagocyte diversity in the human intestine in health and inflammatory bowel disease.
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Preprint Club - Immunology @preprintclub.bsky.social · 02/12/2025
Tomorrow, Rob Crozier from the University of Toronto will present a #preprint from the Morais da Fonseca lab about how Escherichia coli-induced gut IL-33 release inhibits lung type 2 allergic responses. www.biorxiv.org/content/10.1...
biorxiv.org
Escherichia coli-induced gut IL-33 release inhibits lung type 2 allergic responses
Background The incidence of lung allergies is reduced in countries with higher prevalence of infection and environmental exposure to microbes. However, enteric bacterial infections do not always corre...
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Alisa 愛理沙 @alisaiakupova.bsky.social · 01/12/2025
happy advent! @mdc-berlin.bsky.social such a great idea 🙈
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Samuel Moore @samuelmoore.org · 28/11/2025
Interesting investigation into a dodgy Elsevier journal -- with the additional nugget that the CEO of Elsevier's parent company made more than €15 million in total compensation last year. english.elpais.com/science-tech...
english.elpais.com
The fall of a prolific science journal exposes the billion-dollar profits of scientific publishing
One of the 15 publications that put out the most studies globally has been expelled from the indexing system for irregularities. Its publisher, Elsevier, has a 38% profit margin that reached $1.5 bill...
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Alisa 愛理沙 @alisaiakupova.bsky.social · 27/11/2025
Join us for an MDC Afternoon for Immunology at the @mdc-bimsb.bsky.social on December 8th with student/postdoc talks and two keynotes, Jeffrey A. Hubbell and Stefano Casola 🙂 🔗 Register: www.mdc-berlin.de/news/events/...
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medRxivpreprint @medrxivpreprint.bsky.social · 15/09/2025
Effects of butyrylated high amylose maize starch (HAMSB) as an adjuvant for oral immunotherapy www.medrxiv.org/content/10.1101/202…
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