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Alberto HCA

@albertohca.bsky.social
107 followers 136 following 12 posts

PhD interested in antibiotic resistance, MGE, ecology and evolution

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Reposted by Alberto HCA
Craig MacLean @craigmaclean.bsky.social · 27/06/2026
New #microsky#AMR Perspective paper with @penamiller.bsky.social rdcu.be/fqBJo ANTIBIOTIC RESISTANCE (IE MIC) AND TOLERANCE ARE NOT BACTERIAL TRAITS! Please read on if you want an explanation for this provocative claim.
rdcu.be
Beyond resistance and tolerance: rethinking evolutionary responses to antibiotics from the perspective of individual bacterial cells
Nature Communications - Beyond resistance and tolerance: rethinking evolutionary responses to antibiotics from the perspective of individual bacterial cells
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Pablo Laborda @pablolaborda.bsky.social · 09/06/2026
The final version of our latest paper is now published in @natcomms.nature.com! This study illustrates how #AntibioticResistance mechanisms can reshape bacterial physiology beyond resistance itself, ultimately influencing infection dynamics in clinically relevant ways🦠 www.nature.com/articles/s41...
nature.com
Carbapenem-resistance oprD mutations reshape Pseudomonas aeruginosa host-pathogen interactions during infection - Nature Communications
In this work, authors show that the loss of the carbapenem porin OprD in Pseudomonas aeruginosa reduces mucus entrapment and enhances airway epithelial barrier crossing, illustrating how antibiotic re...
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Pleuni Pennings @pleunipennings.bsky.social · 10/06/2026
None of these trees are published by the way, but I do have a paper with another explanation that doesn't require frequency dependence. www.sciencedirect.com/science/arti...
sciencedirect.com
Explaining the stable coexistence of drug-resistant and -susceptible pathogens: the resistance acquisition purifying selection model
Drug resistance is a problem in many pathogens. While overall, levels of resistance have risen in recent decades, there are many examples where after …
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Reposted by Alberto HCA
The EMBO Journal @embojournal.org · 10/06/2026
CapK is a bacterial DNA damage-activated kinase that phosphorylates transcriptional repressor CapS to control adjacently-encoded anti-phage immune pathway genes in response to a universal stress signal, DNA damage @kevincorbett.bsky.social and colleagues link.springer.com/article/10.1...
link.springer.com
A DNA damage-activated kinase phosphorylates a transcriptional repressor to control bacterial immune pathway expression - The EMBO Journal
Bacteria encode numerous stress-response pathways that protect their hosts against both internal and external threats. A key question is how these pathways are regulated, especially anti-phage immune ...
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Reposted by Alberto HCA
Raphael Laurenceau @raphael-microb.bsky.social · 02/05/2026
A really cool method we are just starting to explore!
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Reposted by Alberto HCA
Filipa Trigo da Roza @filipatr.bsky.social · 20/03/2026
New preprint alert!!! 🚀🤓 We are very happy to finally share this with the world — the result of seven years of work and a new tool to study integrons and discover new functions encoded in these bacterial platforms. If you want to know more, here is a thread 🧵 www.biorxiv.org/content/10.6...
biorxiv.org
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Alvaro San Millan @sanmillan.bsky.social · 13/03/2026
Final version of our last paper is out! www.nature.com/articles/s41...
nature.com
Plasmids promote antimicrobial resistance through insertion sequence-mediated gene inactivation - Nature Microbiology
Inactivation of chromosomal genes through plasmid-encoded IS elements is an extended mechanism of antimicrobial resistance evolution in bacteria.
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Pedro Dorado-Morales @doradomoralesp.bsky.social · 26/02/2026
New preprint out on bioRxiv! www.biorxiv.org/content/10.6... Can conjugative plasmids be used to control plasmid and pathogen spread? Follow me down the rabbit hole that led to this story 🧵
biorxiv.org
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Alvaro Sanchez @asanchezlab.bsky.social · 09/03/2026
New preprint on the limits of detecting higher-order interactions in microbial communities. www.biorxiv.org/content/10.6... We find that the dominance of additive and pairwise interactions on community function may not reflect biological simplicity, but fundamental limits of statistical detection.
biorxiv.org
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Alberto HCA @albertohca.bsky.social · 10/03/2026
Excited to share our latest work! 📝 We measured the fitness effect of 136 AMR genes and found that many are neutral or even beneficial without selection. 🤯🧬 Oxygen availability can flip their fitness and our stochastic model indicates that oxygen fluctuations help maintain them. Learn more 👇🏼
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Alberto HCA @albertohca.bsky.social · 18/02/2026
Here we go again!!! 🤟🏻🧑🏼‍🔬
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Paula Ramiro-Martínez @paularamiro.bsky.social · 27/01/2026
New paper out in PNAS!!! 🎉 Do more plasmid copies mean faster evolution? 🧵 Dive into the story www.pnas.org/doi/10.1073/...
pnas.org
Plasmid mutation rates scale with copy number | PNAS
Plasmids are extrachromosomal DNA molecules that spread by horizontal transfer and shape bacterial evolution. Plasmids are typically present at mul...
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The EMBO Journal @embojournal.org · 07/01/2026
Epromoters bind key stress-related transcription factors to regulate clusters of stress response genes Salvatore @spicuglia.bsky.social and coworkers link.springer.com/article/10.1...
link.springer.com
Epromoters bind key stress-related transcription factors to regulate clusters of stress response genes - The EMBO Journal
Cellular and environmental stress triggers the rapid and global reprogramming of gene transcription by coordinated recruitment of a limited number of key inducible transcription factors to cis-regulat...
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Ákos T Kovács @evolvedbiofilm.bsky.social · 06/12/2025
Spx inhibits expression of the SwrA•DegU master flagellar activator in Bacillus subtilis -in JBacteriol journals.asm.org/doi/10.1128/...
journals.asm.org
Spx inhibits expression of the SwrA•DegU master flagellar activator in Bacillus subtilis | Journal of Bacteriology
Bacterial flagella are elaborate machines that are inserted through the bacterial cell envelope. The regulation of flagellar gene expression is organized in hierarchical tiers that largely correlate w...
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Nature Communications @natcomms.nature.com · 19/11/2025
This week is World #AntimicrobialResistance Awareness week This article collection spans the breadth of #AMR across pathogens (bacteria, viruses, fungi, parasites), covers epidemiological monitoring, diagnostics, treatment, etc
bit.ly
Antimicrobial resistance: a silent pandemic
SPONSOR FEATURES
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Alfonso Santos Lopez @asantoslopez.bsky.social · 22/10/2025
Do plasmids really move around that much? Well, maybe not always Thrilled to have contributed to this story with two of my favourite microbiologists: @jrpenades.bsky.social & @sanmillan.bsky.social This great work was led by Akshay Sabnis & @wfigueroac3.bsky.social www.cell.com/cell-reports...
cell.com
Non-conjugative plasmids limit their mobility to persist in nature
Sabnis et al. explain why non-conjugative plasmids move at a low rate in nature. While increased mobility can easily evolve by incorporating phage DNA into plasmids, this is disadvantageous because it...
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Emmanuele Severi @emmseveri.bsky.social · 18/10/2025
www.pnas.org/doi/10.1073/... #phagesky #phage defence #synbio #microsky
pnas.org
Emergence of antiphage functions from random sequence libraries reveals mechanisms of gene birth | PNAS
De novo gene birth—the emergence of genes from nongenic sequences—drives biological innovation, yet its adaptive potential remains poorly understoo...
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José R Penadés @jrpenades.bsky.social · 14/10/2025
Our latest work reveals that arbitrium phages cross-communicate across species! These tiny viruses “listen” to signals from others, coordinating lysis-lysogeny decisions across species. Original idea from @albertomarina.bsky.social and, as usual, he was right. www.biorxiv.org/content/10.1...
biorxiv.org
Phages communicate across species to shape microbial ecosystems
Arbitrium is a communication system that helps bacteriophages decide between lysis and lysogeny via secreted peptides. In arbitrium, the AimP peptide binds its cognate AimR receptor to repress aimX ex...
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Craig MacLean @craigmaclean.bsky.social · 09/10/2025
New pre-print www.biorxiv.org/content/10.1... Plasmid-dependent phage (PDPs) are ubiquitous, but the selective pressures that they impose on plasmids are not well understood. Project led by Daniel Cazares in collaboration with @brockhurstlab.bsky.social! #phagesky#microsky
biorxiv.org
Trade-offs between phage resistance and conjugative ability shape the ecological and evolutionary response of a multidrug resistance plasmid to plasmid-dependent phage
Phage therapy is a promising alternative to antibiotics to treat multidrug resistant infections. Plasmid dependent phages (PDPs) are particularly attractive as therapeutics because they can both kill ...
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Adrian Cazares @cazares-adr.bsky.social · 06/10/2025
Imagine we could travel back in time ⏪⌛️to explore the world of bacterial pathogens before humans discovered and industrialised antibiotics We just did that to study the history of #AMR spread @science.org doi.org/10.1126/scie... If you like time travel & biology, this 🧵is for you👇
doi.org
Pre- and postantibiotic epoch: The historical spread of antimicrobial resistance
Plasmids are now the primary vectors of antimicrobial resistance, but our understanding of how human industrialisation of antibiotics influenced their evolution is limited by a paucity of data predati...
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Alberto HCA @albertohca.bsky.social · 03/10/2025
Creativity keeps your brain young 🎸
nature.com
Creative experiences and brain clocks - Nature Communications
Creative experiences such as dance, music, drawing, and strategy video games might preserve brain health. The authors show that regular practice or short training in these activities is linked to brains that look younger and work more efficiently.
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Reposted by Alberto HCA
Emmanuele Severi @emmseveri.bsky.social · 20/09/2025
www.nature.com/articles/s41... #phagesky #phage
nature.com
Phages with a broad host range are common across ecosystems - Nature Microbiology
Proximity-ligation-based sequencing from 111 samples and 5 environments reveals that a substantial proportion of phages infect multiple species.
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Didier Mazel @amazeld.bsky.social · 19/09/2025
I am so proud to be part of this work, that we initiated Fernando de la Cruz and I, when he was on sabbatical in my lab in 2009... it took so much time for this achievement, 1000 thanks to Raúl Fernández-López! this brought me back to my PhD on cyanobacteria genetics. www.pnas.org/doi/10.1073/...
pnas.org
Mutations in the circadian cycle drive adaptive plasticity in cyanobacteria | PNAS
Circadian clocks allow organisms to anticipate daily fluctuations in light and temperature, but how this anticipatory role promotes adaptation to d...
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Reposted by Alberto HCA
Andreas Bäumler @abaumler.bsky.social · 13/09/2025
Hydrogen sulfide production distinguishes Salmonella from close relatives, but its biological significance remains obscure. This study uncovers the secret: Salmonella uses hydrogen sulfide production as a weapon to outcompete E. coli and gain a foothold in the gut. www.pnas.org/doi/10.1073/...
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Sociedad Española de Bioquímica y Biología Molecular (SEBBM) @sebbm.bsky.social · 26/08/2025
El próximo 5 de septiembre en nuestro #47congresosebbm tendrá lugar la entrega del Premio Fundación Lilly a la Mejor Tesis Doctoral en Bioquímica y Biología Molecular a Alberto Hipólito Carrillo por el trabajo de su tesis. f.mtr.cool/rnstpoiucs
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Alvaro San Millan @sanmillan.bsky.social · 20/08/2025
New paper out!
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Alicia Calvo-Villamañán @aliciapcv.bsky.social · 20/08/2025
This work is finally published! 🥳🧬 Plasmids are associated with very variable fitness costs in their different bacterial hosts. But, what is the contribution of each of the plasmid-genes in these host-specific effects? Study led by @jorgesastred.bsky.social, @sanmillan.bsky.social and myself! 1/14
rdcu.be
Dissecting pOXA-48 fitness effects in clinical Enterobacterales using plasmid-wide CRISPRi screens
Nature Communications - This study investigates the effects of the carbapenem resistance plasmid pOXA-48 in clinical enterobacteria. Using CRISPRi screens, the authors revealed that the...
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Alfonso Santos Lopez @asantoslopez.bsky.social · 13/08/2025
Our new manuscript is out! A bit of everything cool: Plasmids ✅ Insertion Sequences ✅ AMR Evolution ✅ Microbial Communities ✅ Databases analyses ✅ Mathematical modeling ✅ See the scientific thread below of Jorge Sastre, who has brilliantly led this work with @palomarodera.bsky.social
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Jorge Sastre Domínguez @jorgesastred.bsky.social · 13/08/2025
New paper out! 🔈🔈📣📣 Plasmids promote antimicrobial resistance through Insertion Sequence-mediated gene inactivation. Combining experimental and computational approaches, we unveil how two of the most prevalent bacterial MGE accelerate the evolution of AMR. 🧵👇🏻 www.biorxiv.org/content/10.1...
biorxiv.org
Plasmids promote antimicrobial resistance through Insertion Sequence-mediated gene inactivation
Antimicrobial Resistance (AMR) is a major threat to public health. Plasmids are mobile genetic elements that can rapidly spread across bacterial populations, promoting the dissemination of AMR genes i...
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Sternberg Lab @sternberglab.bsky.social · 24/07/2025
1/16 New pre-print from the Sternberg Lab! We uncover how temperate phages can use RNA-guided transcription factors to remodel the flagellar composition of their bacterial host and enhance their fitness. Find the preprint and full story here: tinyurl.com/mshwjd77
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Jerónimo Rodríguez-Beltrán @jerorb.bsky.social · 22/07/2025
Do plasmids evolve faster 🐇, slower 🐢, or just like chromosomes 🧬? In our new paper, we tackled this question using theory, simulations, bioinformatics, and experiments! 👇 Check out all the details in Paula’s thread! Hint: 🐇 (most of the time)
biorxiv.org
Plasmids promote bacterial evolution through a copy number-driven increase in mutation rate
Plasmids are autonomously replicating DNA molecules that stably coexist with chromosomes in bacterial cells. These genetic elements drive horizontal gene transfer and play a fundamental role in bacter...
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Eduardo Rocha @epcrocha.bsky.social · 23/07/2025
Here's our new broad review on the extended mobility of plasmids, about all mechanisms driving and limiting their transfer. From conjugation to conduction, phage-plasmids to hitchers, molecular to evolutionary dynamics, ecology to biotech. The state of affairs. 1/9 academic.oup.com/nar/article/...
graphical abstract of the article the extended mobility of plasmids
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Brian D. Wade @astrobrian.bsky.social · 21/07/2025
Experimental evolution in an era of molecular manipulation #ExperimentalEvolution #evolution #evoSky www.nature.com/articles/s41...
nature.com
Experimental evolution in an era of molecular manipulation - Nature Reviews Genetics
In this Review, Ascensao and Desai discuss how methodological advances in genotype and phenotype manipulation are transforming experimental evolution approaches and providing new insights into the und...
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Alberto HCA @albertohca.bsky.social · 17/07/2025
Great work from great people! Congrats @cserna.bsky.social 🤟🏻
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Hannah Ledvina Ph.D. @hannahledvina.bsky.social · 02/07/2025
Words cannot describe how excited I am to share the findings from the second half of my postdoc in @aaronwhiteley.bsky.social's lab where we discover that bacteria use functional amyloids to defend themselves from predatory bacteria. rdcu.be/euu5Y. See thread for details on this epic adventure 1/.
rdcu.be
Functional amyloid proteins confer defence against predatory bacteria
Nature - Escherichia coli uses curli fibres, oligomers of the functional amyloid CsgA, as a barrier to protect against the predatory bacteria Bdellovibrio bacteriovorus and Myxococcus xanthus in a...
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Alberto HCA @albertohca.bsky.social · 02/07/2025
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Tami Lieberman @contaminatedsci.bsky.social · 30/06/2025
Our paper demonstrating that within-species warfare interactions are ecologically important on human skin is now published in Nature Micro! www.nature.com/articles/s41...
nature.com
Intraspecies warfare restricts strain coexistence in human skin microbiomes - Nature Microbiology
About 15,000 pairwise interactions within S. epidermidis from 18 people in 6 families reveal the antagonism and molecular trade-offs that shape the skin microbiota.
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Sociedad Española de Bioquímica y Biología Molecular (SEBBM) @sebbm.bsky.social · 06/06/2025
🦠 Nuestro #articulodelmes habla sobre cómo los integrones móviles codifican sistemas de defensa contra fagos de la mano del grupo investigador liderado por el Dr. José Antonio Escudero 📄https://f.mtr.cool/qxwueostwp
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Alberto HCA @albertohca.bsky.social · 05/06/2025
Super honored to get the Best PhD Thesis award from @sebbm.bsky.social 🎓✨ Big thanks to everyone who supported me along the way. Huge congrats to all the other amazing winners too! 🙌
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Wolfgang Lab at UNC-Chapel Hill @wolfganglab.bsky.social · 15/05/2025
For our first post on Bluesky, we're excited to share our recent work published in mBio @asm.org! Led by PhD student @madeofmicrobes.bsky.social, we show that flagellar motility and interactions with the mucus environment influence Pseudomonas antibiotic tolerance. journals.asm.org/doi/10.1128/...
journals.asm.org
Flagellar motility and the mucus environment influence aggregation-mediated antibiotic tolerance of Pseudomonas aeruginosa in chronic lung infection | mBio
Antibiotic treatment failure of Pseudomonas aeruginosa infection is a key driver of mortality in muco-obstructive airway diseases (MADs). The bacterial mechanisms that contribute to antibiotic toleran...
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Di Jiang @dijiang319.bsky.social · 11/05/2025
🧫🦠🔬🧬 @science.org Mobile integrons encode phage defense systems | Science www.science.org/doi/10.1126/... @jaescudero.bsky.social @albertohca.bsky.social et al. #microbiology #phage #immunity #phagesky #MicroSky
science.org
Mobile integrons encode phage defense systems
Integrons are bacterial genetic elements that capture, stockpile, and modulate the expression of genes encoded in integron cassettes. Mobile integrons (MIs) are borne on plasmids, acting as a vehicle ...
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Alberto HCA @albertohca.bsky.social · 09/05/2025
What a milestone!!! I’m really glad I got to add my two cents to the growing knowledge about integrons — this paper is totally worth checking out!
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Alberto HCA @albertohca.bsky.social · 30/04/2025
Can resistance genes really hold their breath like pros? 🤔🤿 Outstanding work by Laura, Amalia, Nico and Ester from @jaescudero.bsky.social lab in collab with @sanmillan.bsky.social, Fernando Baquero and Rafael Cantón. Dive into our latest paper to find out! 👇🏼 www.sciencedirect.com/science/arti...
sciencedirect.com
Effect of oxygen on antimicrobial resistance genes from a one health perspective
Bacteria must face and adapt to a variety of physicochemical conditions in the environment and during infection. A key condition is the concentration …
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Alfonso Santos Lopez @asantoslopez.bsky.social · 03/03/2024
Excited to share the first preprint from my lab, collaborating with the fantastic @sanmillan.bsky.social 's lab, led by the amazing Jorge Sastre. We've demonstrated how insertion sequences encoded in plasmids promote bacterial adaptation. This project has been incredibly fun!
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Alex Crits-Christoph @acritschristoph.bsky.social · 26/02/2024
Really like this paper from @fnobrega.bsky.social and co - some defense systems statistically co-occur with each other across genomes and correspondingly show synergistic effects in vitro Bacterial defense systems exhibit synergistic anti-phage activity www.sciencedirect.com/science/arti...
Figure 2. Co-occurrence and negative association among defense systems in E. coli
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Alberto HCA @albertohca.bsky.social · 17/01/2024
🎨
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Jose A Escudero @jaescudero.bsky.social · 15/01/2024
And its out! New paper for #integron aficionados. We found gene-less cassettes in superintegrons that express/silence other cassettes in the array. Here is a 🧵(if I know how to do this in Bluesky...😆) academic.oup.com/nar/advance-...
academic.oup.com
Identification of promoter activity in gene-less cassettes from Vibrionaceae superintegrons
Abstract. Integrons are genetic platforms that acquire new genes encoded in integron cassettes (ICs), building arrays of adaptive functions. ICs generally encod
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Cameron Thrash @jcamthrash.bsky.social · 03/01/2024
Integron cassettes integrate into bacterial genomes via widespread non-classical attG sites www.nature.com/articles/s41... #jcampubs
nature.com
Integron cassettes integrate into bacterial genomes via widespread non-classical attG sites - Nature...
Computational analyses and molecular genetics reveal that integron cassettes integrate into bacterial genomes at widespread non-classical attG sites, enabling acquisition of genetic material and disru...
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Paul Hoskisson 🧫 🦠🐸 @paulhoskisson.bsky.social · 03/01/2024
Scientists hail new #antibiotic that can kill drug-resistant bacteria - & including quotes from the awesome @bugsinblood.bsky.social www.theguardian.com/science/2024... & Original research paper here www.nature.com/articles/s41...
theguardian.com
Scientists hail new antibiotic that can kill drug-resistant bacteria
Zosurabalpin has defeated strains of pneumonia and sepsis in mice, raising hopes for human trials
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STCmicrobeblog @stcmicrobeblog.bsky.social · 04/12/2023
Pictures Considered #62 : A New Twist on Satellite Phages by Roberto   In the phage universe, there are many examples of so-called satellite phages (or satellite phage-like elements) whose propagation depends on helper phages. Outside the... Read more > tinyurl.com/38sj78fs #MicroSky #phagesky
A colorized image of the MiniFlayer satellite virus latched onto its helper MindFlayer. Image by Tagide de Carvalho. Source: https://umbc.edu/stories/first-observed-virus-attaching-to-another/
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