Reposted by Yukiyo SatobioRxiv Plant Bio @biorxiv-plants.bsky.social · 01/10/2026Rice blast fungus hijacks a rice RALF peptide to initiate infection www.biorxiv.org/content/10.64898/20… 02213
Reposted by Yukiyo SatoFantin Mesny @mesny.bsky.social · 01/10/20265 years ago, @hacquardst.bsky.social and I became very interested in 𝑃𝑙𝑒𝑐𝑡𝑜𝑠𝑝ℎ𝑎𝑒𝑟𝑒𝑙𝑙𝑎 𝑐𝑢𝑐𝑢𝑚𝑒𝑟𝑖𝑛𝑎, an emerging fungal pathogen that colonizes the roots of many plants 🌱 🍅 🌾 🆕📝 Final result of a huge team effort to uncover the bases of its multi-host compatibility👇 www.nature.com/articles/s41...nature.comCarbohydrate-active enzymes from a core root mycobiota member enable infection of multiple plant hosts - Nature MicrobiologyHost-induced fungal CAZymes act as disease determinants and drive multihost compatibility. 16730
Reposted by Yukiyo SatoCiaran Kelly @ciarankelly.bsky.social · 08/09/2026Our new preprint is out! 🍄 Decoupled evolution of antimicrobial repertoires in lichen-forming fungi We compared many lichen-forming fungal genomes to ask how different photobiont associations relate to their antimicrobial repertoires. 13719
Reposted by Yukiyo SatoAnton Kraege @antonkraege.bsky.social · 29/07/2026Super proud to see this preprint out! We found that a conserved fungal protein family has ancient antimicrobial activity 🍄🟫 I loved working on this evolutionary side of plant pathogenicity together with my coauthors. Preprint: www.biorxiv.org/content/10.6... 👇 or see the 🧵 here 0209
Reposted by Yukiyo SatoTeam Thomma @teamthomma.bsky.social · 28/07/2026📣 New preprint! 🧵 Fantastic work led by @antonkraege.bsky.social Fact: Cerato-platanins are everywhere in fungi. Found across the fungal kingdom, implicated in everything from development to virulence to immune activation. But what do they *actually* do? We finally found the answer 👇 25343
Reposted by Yukiyo SatoRebecca Berrens @rberrens.bsky.social · 10/07/2026Hi #TEsky, please remember that we have an amazing community in the TransposonsWorldWide slack channel (join.slack.com/t/transposon...), which I encourage you to join. Another great resource is tehub.org. Please share !join.slack.comJoin TransposonsWorldwide on SlackSlack is a new way to communicate with your team. It’s faster, better organized, and more secure than email. 13622
Reposted by Yukiyo SatoBjörn Usadel @usadellab.bsky.social · 25/06/20261/8 What if the genomic features we associate with fungal pathogens were also used by mutualists? We assembled 41 scale lichen genomes across 11 Peltigera species with 30 chromosome scale and 5 T2T revealing an unexpected genomic toolkit behind lichen symbiosis. doi.org/10.64898/202... #lichendoi.orgA chromosome-scale super-pangenome of the lichen genus Peltigera reveals genome architecture and expanded interaction repertoires shared across pathogenic and mutualistic fungiFungi engage in associations with other organisms across a continuum from pathogenic to mutualistic lifestyles. Hence, they require a compendium of molecular capacities, including partner recognition,... 14630
Reposted by Yukiyo SatoTeam Thomma @teamthomma.bsky.social · 25/06/2026Thoroughly enjoyed this collaboration with @usadellab.bsky.social & @faltegoer.bsky.social groups in the @mibinet.bsky.social framework to characterize Peltigera lichen symbioses with major contributions from @ciarankelly.bsky.social & @yukiyosato.bsky.social 01611
Reposted by Yukiyo SatoTeam Thomma @teamthomma.bsky.social · 19/06/2026📣 We are hiring! In the collaborative research center 'Plant Ecological Genetics' @teamthomma.bsky.social searches a PhD candidate to study the role of plant-associated microbiota in plant density responses and inter-plant competition. See project A07. Deadline July 10! 045
Reposted by Yukiyo SatoAndrea Doddi @adoddi.bsky.social · 22/06/2026Thrilled to see this work finally out in Nature Communications! @natcomms.nature.com. Thanks again to all the people involved, to @lfaino.bsky.social and @teamthomma.bsky.social . 0185
Reposted by Yukiyo SatoIsabel saur @izzysaurlab.bsky.social · 04/06/2026We have an open PhD position in our Mol. Biochemistry of Plant-Microbe Interactions Lab Saurlab.com. Please see details below, share and consider applying. jobportal.uni-koeln.de/ausschreibun...jobportal.uni-koeln.de 03855
Reposted by Yukiyo SatoJohana Misas Villamil @jomivi.bsky.social · 03/06/2026📢 new preprint! How do commensal bacteria establish themselves on plant roots despite plant immunity? We identify Cpi1, a conserved membrane-anchored protease inhibitor in Pseudomonas that promotes early root colonization and modulates microbial community assembly. www.biorxiv.org/cgi/content/... 44824
Reposted by Yukiyo SatoMuriel Viaud @muriel-viaud.bsky.social · 03/06/2026Happy to share our work! 🍄🍇 Botrytis cinerea grapevine-specialized strains harbor a specific repertoire of transposons. While retrotransposon-derived small RNAs do not appear to play a significant role in virulence on grapevine, a new giant transposon—a #Starship— confers arsenic resistance. 22715
Reposted by Yukiyo SatoMarion Clavel @thevirusmc.bsky.social · 29/05/2026Our work is out now! (www.science.org/doi/10.1126/...). We discover a selective autophagy pathway that protects plants from the mess caused by RNA viruses. Intrigued? Follow the spaghetti trail for a summary of our findings🧵-->science.orgSelective autophagy fine-tunes plant immunity to promote cell survival during viral infectionRNA viruses co-opt host endomembranes to form replication complexes, often triggering cellular stress and immune responses. Here, we show that Arabidopsis thaliana activates selective autophagy to res... 98140
Reposted by Yukiyo SatoGabriella Petti @gabriellapetti.bsky.social · 28/05/2026Excited to share our latest study with @nicksnelders.bsky.social and @teamthomma.bsky.social! We uncover the mode of action of the V. dahliae antimicrobial effector Ave1 and show that it binds LTA and disrupts bacterial membranes 🦠 www.biorxiv.org/cgi/content/...biorxiv.org 01713
Reposted by Yukiyo SatoLisa Mahdi @lisamahdi.bsky.social · 24/05/2026So happy to see this Story out!! Thanks to everybody that contributed. 093
Reposted by Yukiyo SatoTeam_Zuccaro @algazuccaro.bsky.social · 24/05/2026How do beneficial fungi remodel host cell walls without triggering immunity? We identify SiROCX as a basidiomycete-specific regulator activating CAZyme targets, including GH11/GH10/GH43/CE4 and AA9 enzymes, for xylan/cellulose remodeling during symbiosis. www.biorxiv.org/content/10.6... 0209
Reposted by Yukiyo SatoZoe Prockl @zoeprockl.bsky.social · 21/05/2026Very happy to share results from the first year of my PhD: we found that the model alga Chlamydomonas reinhardtii engages in a mutualistic interaction with Verticillium fungi. With @hroevenich.bsky.social and Urs. Graphical abstract: 🟢 + 🍄= 💚 www.biorxiv.org/content/10.6...biorxiv.org 22613
Reposted by Yukiyo SatoErnesto Llamas @eellamas.bsky.social · 20/05/20261/ Happy to share our latest work, now on bioRxiv! 🌱🍄 We explore how Serendipita indica effectors target root plastids and modulate plastidial metabolism through prion-like domains. bioRxiv: www.biorxiv.org/content/10.6... #plastids #plantmicrobe #chloroplasts #plantsbiorxiv.org 2249
Reposted by Yukiyo SatoRiccardo Baroncelli @riccardobaroncelli.bsky.social · 15/05/2026Thrilled to see this finally out!! Our new work suggests #Starships helped #Colletotrichum acquire the genes needed to infect lupin. A glimpse into how fungal pathogens emerge through horizontal transfer and genome reshaping. biorxiv.org/content/10.6... #Fungi #Genomics #Pathogenicity #evolution 25330
Reposted by Yukiyo SatoTeam Thomma @teamthomma.bsky.social · 13/05/2026📣 New preprint on @biorxivpreprint.bsky.social: Bacteria rewire fungal antimicrobial gene expression in microbial arms races www.biorxiv.org/cgi/content/... This work, led by outstanding @jinyi-zhu.bsky.social, shows that bacteria suppress fungal antimicrobial protein expression to evade antagonismbiorxiv.org 24626
Reposted by Yukiyo SatoJinyi Zhu @jinyi-zhu.bsky.social · 10/05/2026Fungi deploy antimicrobial proteins (AMPs) to compete with microbes, including bacteria. But can bacteria fight back? We @teamthomma.bsky.social found that some AMP-sensitive bacteria can repress AMP deployment, suggesting an unrecognized bacterial–fungal arms race. www.biorxiv.org/content/10.6...biorxiv.org 03116
Reposted by Yukiyo SatoFantin Mesny @mesny.bsky.social · 29/04/2026🎉 📰 Very happy to share the journal publication of our manuscript "Plant-associated fungi co-opt ancient antimicrobials for host manipulation"! #ScienceAdvancesResearch @science.org @teamthomma.bsky.social www.science.org/doi/10.1126/...science.orgPlant-associated fungi co-opt ancient antimicrobials for host manipulationFungal effectors may have evolved from ancient antimicrobials, shaping plant microbiota and immunity during infection. 69649
Reposted by Yukiyo SatoCecile Lorrain @ccilelorrain.bsky.social · 15/04/2026Thrilled to share our paper now out in Nature Plants 🎉 We developed a genome-host association (GHA) approach to study pathogen adaptation directly from field metadata by using the originating host cultivar as phenotype. www.nature.com/articles/s41...nature.comGenome–host association mapping reveals wheat pathogen genes involved in host specialization - Nature PlantsThis study introduces genome–host association (GHA), leveraging natural epidemics to map the genetic landscape of host adaptation in the pathogen Zymoseptoria tritici. Applied to 832 wheat fungal stra... 35231
Reposted by Yukiyo SatoTeam Thomma @teamthomma.bsky.social · 18/03/2026🥳 Happy that our manuscript, first published on @biorxivpreprint.bsky.social has been accepted for publication in "Microbiome" and will be part of a collection on "Harnessing plant microbiomes to improve performance and mechanistic understanding" link.springer.com/article/10.1...link.springer.comDifferential contributions of an antimicrobial effector from Verticillium dahliae to virulence and tomato microbiota assembly across natural soils - MicrobiomeBackground Throughout their life cycle, plants associate with diverse and complex microbial communities collectively known as their microbiota. These microbiota contribute to plant performance and hea... 02113
Reposted by Yukiyo SatoTeam Thomma @teamthomma.bsky.social · 15/03/2026🎉 Last week @antonkraege.bsky.social brilliantly defended his PhD thesis @unicologne.bsky.social entitled "Functional and Evolutionary Characterisation of Antimicrobial Effectors Secreted by Verticillium dahliae to Shape Host Microbiota" #proudPI #PhDone 03610
Reposted by Yukiyo SatoGeminiTeamLab @geminiteamlab.bsky.social · 20/02/2026RNA splicing generates a functionally specialized Rep protein isoform in geminiviruses — enabling timely control of the viral cycle. Strikingly, similar strategies might have evolved in DNA viruses infecting different kingdoms: www.biorxiv.org/content/10.6... Spearheaded by @delphinem-p.bsky.social! 05435
Reposted by Yukiyo SatoTeam Thomma @teamthomma.bsky.social · 18/02/2026📣 12 open postdoc positions in @ceplas.bsky.social !! www.ceplas.eu/en/training-... We @teamthomma.bsky.social look for a postdoc on The Secret Lives of Soil-Borne Fungal Pathogens: Spatiotemporal Dynamics of Intermicrobial Interactions in Soils (see project 4)ceplas.euCEPLAS: Call 2026 01920
Reposted by Yukiyo SatoTeam Thomma @teamthomma.bsky.social · 14/02/2026📣 Our latest story just dropped on bioRxiv:: A structurally unique effector shared between Verticillium dahliae and Fusarium oxysporum is involved in cotton defoliation and virulence on other hosts www.biorxiv.org/content/10.6... 🧵biorxiv.org 34630
Reposted by Yukiyo SatoIsabelle Fudal @ifudal.bsky.social · 31/01/2026A permanent position as a research scientist is opened in our team! We look for a plant physiologist with expertise in plant / microorganism interactions to identify plant susceptibility factors to fungal disease. Please forward! 02335
Reposted by Yukiyo SatoTeam Thomma @teamthomma.bsky.social · 27/01/2026🎉 Yesterday we enjoyed the glorious defence of @gabriellapetti.bsky.social of her @unicologne.bsky.social PhD thesis on "Homologous antimicrobial proteins in plants and fungi: conserved mechanisms shaping the plant microbiota" #proudPI #PhDone ..mind the crown modeled after the Ave1 NMR structure!😍 2369
Reposted by Yukiyo SatoAsiya Gusa @asiya-gusa.bsky.social · 17/01/2026Sharing our lab’s first publication! Probing clinical isolates of Cryptococcus, a disease-causing fungus of the lungs and brain, we found multiple heat-mobile elements that ‘jump’ in the genome at body temperature (!) with the ability to drive adaptive changes. journals.plos.org/plosgenetics... 13115
Reposted by Yukiyo SatoIsabel saur @izzysaurlab.bsky.social · 10/01/2026Wei Shi @wshisky.bsky.social & Merle‘s work is online. Wei really pushed this work from scratch and Merle linked it to MLA diversification…3rd (co-)first author paper in her PhD. Very proud PI! And only possible through collaboration with G. Döhlemann, @grandpahiro.bsky.social &, Matt Platre. (1/x)doi.orgTargeting of the barley cell-surface receptor SRF3 by the Blumeria hordei effector AVRA13 overlaps with AVRA13 recognition by MLA and the induction of NLR-mediated cell death.Pathogens secrete effector proteins to promote virulence. Despite their recognition by barley Mla resistance genes, the structurally-related Blumeria hordei ( Bh ) AVRA effectors are maintained in the... 44936
Reposted by Yukiyo SatoSlavica Janevska @slavi-jan.bsky.social · 07/01/2026Beyond excited to see this work finally out in @narjournal.bsky.social! We show that epigenetic modifiers on fungal accessory chromosomes can contribute to the overall epigenetic profile. Many thanks to @gomezlucia93.bsky.social and our other amazing collaborators 👏🏻 academic.oup.com/nar/article/...academic.oup.comFacultative heterochromatin mediated by core and accessory chromosome-encoded H3K27-specific methyltransferases controls virulence in a fungal phytopathogenAbstract. In many fungal phytopathogens, infection is regulated by accessory genomic regions enriched in facultative heterochromatin, but the precise role 13419
Reposted by Yukiyo SatoMarion Clavel @thevirusmc.bsky.social · 16/12/2025We are looking far and wide for this position! So if you are motivated, interested in academia, and want to explore the world of plant-virus interaction, we are ALSO happy to host you for a PhD! More detail below🔽☘️🦠 01721
Reposted by Yukiyo SatoMarion Clavel @thevirusmc.bsky.social · 16/12/2025The Clavel Group is recruiting a new postdoc for two possible projects dealing with plant-virus interactions and selective autophagy! More (wordy) details below ⬇️🌱🦠 03338
Reposted by Yukiyo SatoTatsuya Nobori @tatsuyanobori.bsky.social · 15/12/2025🚨We’re hiring! Please help spread the word! Our lab at @TheSainsburyLab is recruiting a pre-doctoral intern to work on plant immunity research. Ideal for those who are planning to pursue a PhD and seeking research experience. tatsuyanobori.com 24653
Reposted by Yukiyo SatoTeam Thomma @teamthomma.bsky.social · 12/12/2025📣 Major milestone achieved! First @teamthomma.bsky.social @unicologne.bsky.social PhD student graduated 🎉! Congratulations to @wolki95.bsky.social for a stellar defence of a thesis on antimicrobial effectors of Verticillium dahliae that drive niche adaptation #proudPI #PhDone 2449
Reposted by Yukiyo SatoJosje Romeijn @jromeijn.bsky.social · 09/12/2025Now officially published in Current Biology 🥳🥳 @mfseidl.bsky.social @binfutrecht.bsky.social www.cell.com/current-biol...cell.comExtensive horizontal transfer of transposable elements shapes fungal mobilomesRomeijn et al. reveal that horizontal transposon transfer is widespread in fungi, contributing up to 70% of transposon content in some taxa. The authors uncover thousands of events across diverse line... 36337
Reposted by Yukiyo SatoMarco Incarbone @incavirus.bsky.social · 02/12/2025Preprint alert! It is my great pleasure to announce the first manuscript from the lab, a story that started @gmivienna.bsky.social and was mainly accomplished by the intrepid @gesahoffmann.bsky.social at @mpi-mp-potsdam.bsky.social. A brief thread with our findings www.biorxiv.org/content/10.1...biorxiv.orgAGO5 restricts virus vertical transmission in plant gametophytesThe propagation of a viral infection from a host parent to its progeny is known as vertical transmission, or seed transmission in plants. It allows viral infections to rapidly spread locally via polle... 27937
Reposted by Yukiyo SatoCecile Lorrain @ccilelorrain.bsky.social · 28/11/2025Our paper on Zymoseptoria tritici 3D genome organization is officially out! @iglavincheska.bsky.social link.springer.com/article/10.1...link.springer.comThree-dimensional genome architecture connects chromatin structure and function in a major wheat pathogen - BMC BiologyBackground Genome spatial organization plays a fundamental role in biological function across all domains of life. While the principles of nuclear architecture have been well-characterized in animals ... 13524
Reposted by Yukiyo SatoGulnara Tagirdzhanova @metalichen.bsky.social · 28/11/2025New preprint: 🚀🧬 Starship in the genome of the lichen fungus Xanthoria. Discovery of giant transposons Starships challenged what we thought we knew about fungal genomes. But what about Starships in #lichen fungi? Let us present Tangerine! 🖥️ 🧪 🦠 🧫 #SymbioSky doi.org/10.1101/2025... 15621
Reposted by Yukiyo SatoNick Dunken @nickdunken.bsky.social · 27/11/2025My former colleague Patricia Zecua, me and the Zuccaro group published a new story about how autophagy restricts cell death and regulates root colonization by beneficial fungi: academic.oup.com/plphys/advan...academic.oup.comAutophagy restricts symbiosis-associated cell death and regulates colonization by Serendipita indica in ArabidopsisAutophagy acts as a pro-survival mechanism in plant roots during beneficial fungal colonization by restricting fungal proliferation and immunometabolic cel 02416
Reposted by Yukiyo SatoMegan McDonald @mcdonaldmeganc.bsky.social · 18/11/2025Our latest pre-print on TE-mediated tandem duplication of the ToxB effector is now online...still a puzzle for us but we think it is in a Helitron! Together with amazing collaborators, Reem Aboukhaddour and Ryan Gourlie #TE #fungi www.biorxiv.org/content/10.1...biorxiv.orgThe virulence gene ToxB is both amplified and disrupted by transposons in the wheat pathogen Pyrenophora tritici-repentis### Competing Interest Statement The authors have declared no competing interest. Agriculture and Agri-Food Canada, https://ror.org/051dzs374 Alberta Grain Saskatchewan Wheat Development Commissio... 03414
Reposted by Yukiyo SatoToby Baril @tobybarilbio.bsky.social · 12/11/2025TEs aren’t just genomic parasites, they’re also engines of genomic novelty. Our new study with ~2,000 Z. tritici genomes shows repeated TE mobilization waves during global expansion. With @danielcroll.bsky.social & @guidopuccetti.bsky.social 🧬 www.nature.com/articles/s41... #TEworldwidenature.comHistoric transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen - Nature CommunicationsIn this study, the authors analysed a large genomic dataset to trace how jumping genes shaped the global spread of a major wheat pathogen and reveal bursts of activity over decades that drove adaptati... 07338
Reposted by Yukiyo SatoGulnara Tagirdzhanova @metalichen.bsky.social · 12/11/2025Our paper on the #genome of the Trebouxia #photobiont from Xanthoria is now out in @newphyt.bsky.social! Check below for a near-chromosome level assembly, secretome analysis, evidence of ancient HGT, and transcriptomic comparison of the alga in symbiosis and in pure culture doi.org/10.1111/nph.70728 15920
Reposted by Yukiyo SatoZarah Sorger @zarizarah.bsky.social · 10/11/2025🚨My very first (co-)first author paper got published in @pnas.org 🥳 We describe the tripartite interkingdom interaction between a yeast, the oomycete pathogen Albugo laibachii and a bacterium, mediated by a GH25 lysozyme 🦠 Thanks to everyone involved! www.pnas.org/doi/10.1073/...pnas.orgGH25 lysozyme mediates tripartite interkingdom interactions and microbial competition on the plant leaf surface | PNASMicrobial communities inhabiting plants have emerged as crucial factors in regulating plant health and defense against disease-causing pathogens. T... 1189
Reposted by Yukiyo SatoLeo Castanedo @leocastanedo.bsky.social · 04/11/2025🛑Exciting update from our work with @pierremarcdelaux.bsky.social team on the ericoid mycorrhizal symbiosis❗❗ 🔥New results support a conserved three-gene module and master regulator for nutrient-responsive intracellular accommodation of fungal symbionts🤯 Check the nice thread below👇🏼 #plantscience 0229
Reposted by Yukiyo SatoCristina Barragan @cbarragan.bsky.social · 03/11/2025My new Emmy Noether Group is recruiting! 🔬 Two PhD positions in plant pathogen evolution 🧬 Start: April 2026 (flexible) 📍 Dept. of Phytopathology & Plant Protection @rstam.bsky.social @uni-kiel.de ⏰ Apply by 15 Dec 2025 🔗 More info: www.uni-kiel.de/personal/de/... Do get in touch or share 😊uni-kiel.deAktuelle AusschreibungenAktuelle Ausschreibungen 05460