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Xiaoli Sky Wu

@xiaoliwu.bsky.social
380 followers 132 following 13 posts

Post doc with Mike E Greenberg at HMS, working on molecular neuroscience. Ph.D.at CSHL on identifying a novel family of cell type-specific cofactors. Co-organizer of Gene expression and RNA series, and Fragile nucleosome seminar.

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Xiaoli Sky Wu @xiaoliwu.bsky.social · 07/07/2026
Dont miss this great opportunity to present your research!
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FragileNucleosome @fnucleosome.bsky.social · 24/11/2025
Do you have an exciting new chromatin/transcription story that you'd like to share with the #FN community? Fill out this form to be considered for a talk in our Jan-June 2026 schedule! forms.gle/TBi38UgYxPAB... Please repost and share!
forms.gle
Application to speak in the Fragile Nucleosome series
Thank you for your interest in our seminar series! We use a variety of different session formats but, in general, trainees can plan for a ~15 min talk + 5min Q/A and PIs can plan for a ~25min talk +...
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Xiaoli Sky Wu @xiaoliwu.bsky.social · 24/11/2025
Thank you for coming out all the way from California to Boston for this!
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GEARs @gearseminar.bsky.social · 18/11/2025
Please join us on November 20th! We are very grateful for our first sponsorship - Molecular Instrument!
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Xiaoli Sky Wu @xiaoliwu.bsky.social · 05/11/2025
Congrats Alexander! Cannot imagine you made a dTAG mice!
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Memorial Sloan Kettering Cancer Center @mskcancercenter.bsky.social · 23/07/2025
After one patient's synovial sarcoma returned, a clinical trial led MSK helped shrink his tumors by 85%. That same #Tcell therapy is now approved by the @fda.gov. Learn more ⬇️
mskcc.org
How Afami-Cel Immunotherapy Helped a Young Man With Stage 4 Synovial Sarcoma
Learn how a clinical trial for a new type of immunotherapy called TCR therapy benefited a patient with synovial sarcoma.
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Nature Biotechnology @natbiotech.nature.com · 18/07/2025
Designed protein domains can selectively target intrinsically disordered regions, potentially generating binders for key proteins in biological function and disease. www.science.org/doi/10.1126/... #NBThighlight
science.org
Design of intrinsically disordered region binding proteins
Intrinsically disordered proteins and peptides play key roles in biology, but a lack of defined structures and high variability in sequence and conformational preferences have made targeting such syst...
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Science Magazine @science.org · 24/06/2025
A new #ScienceReview takes a look at the contribution of neuroinflammation during the course of a range of neurologic disorders, including multiple sclerosis, stroke, Alzheimer's disease, and Parkinson's disease. scim.ag/44wDXIH
scim.ag
Neuroinflammation across neurological diseases
The brain’s response to injury includes the activation of intrinsic microglia and the influx of leukocytes, collectively constituting neuroinflammation, the “flame” of the brain. Although details diff...
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FragileNucleosome @fnucleosome.bsky.social · 18/06/2025
FN is taking a summer vacation 🏖️, but we'll be back in September with more exciting talks on chromatin and transcription! If you've got a new story you'd like to share with the FN audience this fall, fill out the form here: docs.google.com/forms/d/e/1F...
docs.google.com
Application to speak in the Fragile Nucleosome series
Thank you for your interest in our seminar series! We use a variety of different session formats but, in general, trainees can plan for a ~15 min talk + 5min Q/A and PIs can plan for a ~25min talk +...
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Reposted by Xiaoli Sky Wu
Jackson Hoffman @jxhoffman.bsky.social · 19/06/2025
Do you or someone you know have an exciting new chromatin/transcription story that you'll be ready to talk about in the Fall? Then fill out or share this form to speak in the @fnucleosome.bsky.social seminar series! All models, organisms, and complexes welcome 🧬🧪🔬
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Jeremy Berg @jeremymberg.bsky.social · 16/06/2025
NYT story about Judge Young’s ruling
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Xiaoli Sky Wu @xiaoliwu.bsky.social · 14/06/2025
Excited for these three talks on Wednesday!! Pls join us!
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King Lab at McGill University @kinglabmcgill.bsky.social · 10/06/2025
Are you an established PI that studies the human immune system and looking for a change of location? If the answer is yes, #McGill has an amazing opportunity to provide long-term funding at a world class institution. Apply now!!!! Please repost!!! mcgill.wd3.myworkdayjobs.com/en-US/McGill...
mcgill.wd3.myworkdayjobs.com
Canadian Excellence Research Chair (CERC) in Human Immunology
Please refer to the How to Apply for a Job (for External Candidates) job aid for instructions on how to apply. If you are an active McGill employee (ie: currently in an active contract or position at ...
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Jason Sheltzer @jsheltzer.bsky.social · 23/05/2025
If you're an international PhD student at Harvard working on something that my lab is familiar with and you're at risk of deportation, shoot me an email. We may be able to host you or find someone else who can.
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FragileNucleosome @fnucleosome.bsky.social · 15/05/2025
Join us on Wednesday next week for two exciting talks on transcription regulation from @kasitc.bsky.social and @davidsuter.bsky.social! You can register at: us06web.zoom.us/webinar/regi...
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Immunity @cp-immunity.bsky.social · 13/05/2025
dlvr.it
Acute exposure to high-fat diet impairs ILC3 functions and gut homeostasis
Xiong et al. report that short-term, high-fat diet exposure rapidly alters the gut microbial and immune environment, disrupting tissue homeostasis. IL-22 production by group 3 innate lymphoid cells (ILC3s) is impaired, compromising gut barrier integrity. Saturated fatty acids intrinsically suppress ILC3 function, reducing their ability to control gut inflammation.
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FragileNucleosome @fnucleosome.bsky.social · 06/05/2025
Tomorrow!!! Register and join us for exciting research talks from @baluapuri.bsky.social and @juliecocquet.bsky.social!
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Lucas Farnung @lucas.farnunglab.com · 06/05/2025
Outstanding work from Allison James who will graduate next month! If you like our work, consider applying to the Farnung Lab. More info: farnunglab.com
farnunglab.com
Farnung Lab
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Xiaoli Sky Wu @xiaoliwu.bsky.social · 01/05/2025
We have reached 100 registrations for our 2nd seminar!
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Nature Biotechnology @natbiotech.nature.com · 17/04/2025
A tool to dissect regulatory DNA in its endogenous context enables the identification of designed small edits (<10 bp) that fine-tune gene expression, with potential therapeutic implications #NBThighlight www.cell.com/cell/abstrac...
cell.com
Rewriting regulatory DNA to dissect and reprogram gene expression
Martyn and Montgomery et al. present Variant-EFFECTS, a high-throughput technology developed to precisely measure the effects of CRISPR-mediated edits on gene expression. Variant-EFFECTS is reproducib...
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Nature Biotechnology @natbiotech.nature.com · 09/04/2025
A VLP system for the delivery of various editors is optimized for the fraction of fully assembled editor ribonucleoproteins. This increases the per-VLP efficacy of editing in primary T lymphocytes and mouse models of inherited retinal disease. www.cell.com/cell/fulltex... #NBTHighlight
cell.com
Engineered nucleocytosolic vehicles for loading of programmable editors
Engineered nucleocytosolic vehicles for loading of programmable editors (ENVLPE) with enhanced CRISPR ribonucleoprotein (RNP) loading and stabilization enable the efficient delivery of gene-editing ef...
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Nature Biotechnology @natbiotech.nature.com · 07/04/2025
A large-scale cross-species association study identifies new microbial gut colonization factors, whose modulation enhances the ability of poorly colonizing bacterial strains to establish in the mouse intestine #NBThighlight cell.com/cell/fulltex...
cell.com
Conserved genetic basis for microbial colonization of the gut
Tree-of-life scale genotype-habitat association reveals conserved gene modules across thousands of gut microbial species and identifies previously undescribed factors that modulate microbial colonizat...
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OncoDaily @oncodaily.bsky.social · 03/04/2025
Meet the New AACR Board of Directors for 2025-2028 Term @theaacr.bsky.social @megeblad.bsky.social oncodaily.com/societies/aa... #OncoDaily #Oncology #Cancer #Health #Medicine #MedEd #MedOnc #MedNews #AACR #BoardOfDirectors
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Janet Song @janetsong.bsky.social · 02/04/2025
We just posted two preprints on uncovering the genetic bases of species-specific differences in neural progenitors, excitatory neurons, and upon neuronal stimulation using the human-chimpanzee tetraploid system. Please check them out! www.biorxiv.org/content/10.1... www.biorxiv.org/content/10.1...
biorxiv.org
Human-chimpanzee tetraploid system defines mechanisms of species-specific neural gene regulation
A major challenge in human evolutionary biology is to pinpoint genetic differences that underlie human-specific traits, such as increased neuron number and differences in cognitive behaviors. We used human-chimpanzee tetraploid cells to distinguish gene expression changes due to cis -acting sequence variants that change local gene regulation, from trans expression changes due to species differences in the cellular environment. In neural progenitor cells, examination of both cis and trans changes – combined with CRISPR inhibition and transcription factor motif analyses – identified cis -acting, species-specific gene regulatory changes, including to TNIK , FOSL2 , and MAZ , with widespread trans effects on neurogenesis-related gene programs. In excitatory neurons, we identified POU3F2 as a key cis -regulated gene with trans effects on synaptic gene expression and neuronal firing. This study identifies cis -acting genomic changes that cause cascading trans gene regulatory effects to contribute to human neural specializations, and provides a general framework for discovering genetic differences underlying human traits. ### Competing Interest Statement C.A.W. is on the SAB of Bioskyrb Genomics (cash, equity) and Mosaica Therapeutics (cash, equity), and is an advisor to Maze Therapeutics (equity), but these have no relevance to this work. The remaining authors declare no competing interests.
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Cedric Boeckx @cedricboeckx.bsky.social · 02/04/2025
Compelling evidence that the activity-dependent gene expression program has changed between human and chimpanzee neurons (new preprint by @janetsong.bsky.social and collaborators) 🧪🧬🧠 www.biorxiv.org/content/10.1...
biorxiv.org
FOS binding sites are a hub for the evolution of activity-dependent gene regulatory programs in human neurons
After birth, sensory inputs to neurons trigger the induction of activity-dependent genes (ADGs) that mediate many aspects of neuronal maturation and plasticity. To identify human-specific ADGs, we cha...
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Xiaoli Sky Wu @xiaoliwu.bsky.social · 02/04/2025
What contributes to human specific neural specification? Check out these two wonderful preprints from a wonderful scientist Ava carter! 1. www.biorxiv.org/content/10.1...; 2. www.biorxiv.org/content/10.1... Stay tuned! third preprint is on its way!
biorxiv.org
Human-chimpanzee tetraploid system defines mechanisms of species-specific neural gene regulation
A major challenge in human evolutionary biology is to pinpoint genetic differences that underlie human-specific traits, such as increased neuron number and differences in cognitive behaviors. We used ...
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Arnaud Krebs @arnaudkr.bsky.social · 02/04/2025
The importance of moving away from bulk! Occupancy of Pol II at promoters is dramatically different between fly and mouse cells! When looking single molecule! Proud of the team! @kasitc.bsky.social @molinalab.bsky.social doi.org/10.1038/s443...
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Fred Hutch Basic Sciences Division @basicsci.fredhutch.org · 28/03/2025
Cell biologist and former @FredHutch.bsky.social division leader Dr. Jonathan Cooper retires. Learn about his many years of scientific discovery and time directing the Basic Sciences Division:
fredhutch.org
Cell biologist and former Fred Hutch division leader Dr. Jonathan Cooper retires
After 40 years of asking good questions of his own science and the science of his colleagues at Fred Hutch, cell biologist Dr. Jonathan Cooper has retired from the Basic Sciences Division.
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FragileNucleosome @fnucleosome.bsky.social · 23/03/2025
🌱Join us for the first #FragileNucleosome seminar of this spring! We are excited to host @juliamaristany.bsky.social & @chribue.bsky.social this week! If you have registered before you can join from the same link, if not, don't forget to register! us06web.zoom.us/webinar/regi...
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Ben Martin @benjaminmartin.bsky.social · 12/03/2025
Fantastic work from my soon-to-be neighbour Loϊc Binan (and all)! Simultaneous CRISPR screening and spatial transcriptomics reveal intracellular, intercellular, and functional transcriptional circuits www.cell.com/cell/fulltex...
Graphical abstract for Binan et al., Simultaneous CRISPR screening and spatial transcriptomics reveal intracellular, intercellular, and functional transcriptional circuits
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Ryan Flynn @raflynn5.bsky.social · 27/02/2025
Excited to share the work of Jonathan Perr where he uncovered a surprisingly common feature of cell surfaces - the presentation and clustering of RNA binding proteins with #glycoRNA. Critically support by #NIH @cp-cell.bsky.social www.cell.com/cell/abstrac...
cell.com
RNA-binding proteins and glycoRNAs form domains on the cell surface for cell-penetrating peptide entry
Mammalian cells present RNA-binding proteins on the cell surface that form clustered domains containing glycoRNAs.
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Nature Cell Biology @natcellbio.nature.com · 26/02/2025
☕️Guo & co characterize an intact Carnegie stage 7 #HumanEmbryo at single-cell resolution in a spatially resolved manner. 👉🏻https://rdcu.be/ebq3Q bit.ly/4k9U6to
bit.ly
Spatial transcriptomic characterization of a Carnegie stage 7 human embryo - Nature Cell Biology
Guo and colleagues characterize an intact Carnegie stage 7 human embryo at single-cell resolution in a spatially resolved manner.
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Claudio Ballabio @claballabio.bsky.social · 26/02/2025
Did you know cancer cells can be electrically active, just like neurons? This electrical activity plays a key role in tumor progression. Excited to share my first postdoc paper at @crick.ac.uk (and first paper from Leanne Li lab), published in @natureportfolio.nature.com!
nature.com
Intrinsic electrical activity drives small-cell lung cancer progression - Nature
Electrical excitability in neuroendocrine SCLC cells promotes tumour progression through action potential firing, increasing ATP demand and oxidative phosphorylation dependency, whereas non-neuroendoc...
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Immunity @cp-immunity.bsky.social · 24/02/2025
Online now: Online now: The kinase RIPK3 promotes neuronal survival by suppressing excitatory neurotransmission during central nervous system viral infection
dlvr.it
The kinase RIPK3 promotes neuronal survival by suppressing excitatory neurotransmission during central nervous system viral infection
How innate immune signaling within neurons influences neurotransmission remains poorly understood. Estevez et al. show that the necroptotic kinase RIPK3 promotes neuronal survival during viral infections of the central nervous system by engaging a…
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Nature Biotechnology @natbiotech.nature.com · 24/02/2025
Human respiratory airway progenitors derived from pluripotent cells generate alveolar epithelial cells and model pulmonary fibrosis - @columbiamed.bsky.social go.nature.com/4hQa5eI
go.nature.com
Human respiratory airway progenitors derived from pluripotent cells generate alveolar epithelial cells and model pulmonary fibrosis - Nature Biotechnology
Human pluripotent cells are differentiated into lung progenitors and alveolar type 1 cells.
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FragileNucleosome @fnucleosome.bsky.social · 22/02/2025
🎆Next #FragileNucleosome meeting is less than a week away! We are delighted to host @manucazottes.bsky.social, @robertadolling1.bsky.social & @leandrosboukas.bsky.social ! We will discuss evolution of XIST regulatory network, cancer epigenetics, and MDEMs! 🗓️ us06web.zoom.us/webinar/regi...
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Kaessmann Lab @kaessmannlab.bsky.social · 13/02/2025
So excited to announce that our study on the development and evolution of pallial cell types and structures in birds, led by @bassi-z.bsky.social, is now out in @science.org! www.science.org/doi/10.1126/...
science.org
Developmental origins and evolution of pallial cell types and structures in birds
Innovations in the pallium likely facilitated the evolution of advanced cognitive abilities in birds. We therefore scrutinized its cellular composition and evolution using cell type atlases from chick...
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Xiaoli Sky Wu @xiaoliwu.bsky.social · 14/02/2025
Very excited to bring GEARs back with @jonmarkert.bsky.social and @ara-latifkar.bsky.social. We look forward to seeing you in Goldenson 122, Harvard Medical School for our first seminar on 02/27, 6PM.
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Xiaoli Sky Wu @xiaoliwu.bsky.social · 12/02/2025
Look who is back! @gearseminar.bsky.social Stay tuned for the first seminar!
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Ben Martin @benjaminmartin.bsky.social · 26/01/2025
2025 Fragile Nucleosome talks kick off this Wednesday with two great speakers! We'll hear about everything from tardigrades and cryo-EM of nucleosome bound factors to SWI/SNF, LTRs, and ovarian tumors. You won't want to miss this one, register here! us06web.zoom.us/webinar/regi...
us06web.zoom.us
Welcome! You are invited to join a webinar: Fragile Nucleosome. After registering, you will receive a confirmation email about joining the webinar.
Welcome! You are invited to join a webinar: Fragile Nucleosome. After registering, you will receive a confirmation email about joining the webinar.
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EpiCypher @epicypher.bsky.social · 09/01/2025
🧬🧪 New CUT&RUN application! New paper from Ian Maze's lab highlight the application of our CUTANA CUT&RUN tech to profile histone monoaminylation PTMs. Bonus - they also included E. coli spike-in DNA to enable sequencing normalization! #epigenomics www.nature.com/articles/s41...
nature.com
Bidirectional histone monoaminylation dynamics regulate neural rhythmicity - Nature
TG2 functions as an eraser and exchanger of H3 monoaminylations, including histaminylation of Gln5 of histone H3.
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Jakob von Moltke @jmoltke.bsky.social · 17/12/2024
We're hiring! Funded postdoctoral position available in the Moltke Lab. 79k starting salary and access to a fellowship program in the Institute for Translational Immunology that offers both academic and industry training tracks. Details here: jobrxiv.org/job/universi...
jobrxiv.org
Postdoctoral Fellow - Moltke Lab
Post a job in 3min, or find thousands of job offers like this one at jobRxiv!
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Xiaoli Sky Wu @xiaoliwu.bsky.social · 04/12/2024
Please join us tomorrow at 12pm EST! 😀
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Fillip Port @crisprflydesign.bsky.social · 02/12/2024
Our new preprint is out - please share! We asked: How can we make CRISPR knockouts in vivo more efficient? And set up an assay that enables detection of CRISPR cutting with 100s-1000s of sgRNAs over entire chromosome arms in living animals. Grab a ☕ and let’s dive in. 🧵🧪 1/n #CRISPR #geneediting
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Mark Dawson @mafdawson.bsky.social · 22/11/2024
Come and join the team @sj-dawson.bsky.social @petermaccc.bsky.social
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Jakob von Moltke @jmoltke.bsky.social · 13/05/2024
The induction of Cl-/fluid secretion requires basolateral release of acetylcholine, but Philippe Jay and colleagues also describe an apical function for tuft cell ACh in defense against worms. www.cell.com/immunity/ful...
cell.com
Tuft cell acetylcholine is released into the gut lumen to promote anti-helminth immunity
Intestinal tuft cells are known as sentinels capable of initiating type 2 immune responses upon parasite infections. Ndjim et al. now report a direct effector function for intestinal tuft cells during...
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Memorial Sloan Kettering Cancer Center @mskcancercenter.bsky.social · 23/11/2024
A research team from MSK’s Sloan Kettering Institute and collaborators have identified a compound called gliocidin that may have the potential to improve the survival of patients with #glioblastoma – now in @natureportfolio.bsky.social #oncSKY #medSKY Read the study: www.nature.com/articles/s41...
nature.com
Gliocidin is a nicotinamide-mimetic prodrug that targets glioblastoma - Nature
The prodrug gliocidin effectively kills glioblastoma cells by targeting de novo purine synthesis, improving survival in mouse models.
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Xiaoli Sky Wu @xiaoliwu.bsky.social · 30/10/2023
We were supposed to go for a hike as a lab outgoing today. It unfortunately rained so we decided to go for fancy food. Guess the person who is giving lab meeting next week is the roasted duck.
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FragileNucleosome @fnucleosome.bsky.social · 06/10/2023
⚡Are you ready for another #FragileNucleosome mini-Symposium? 🧬Do you want to meet (virtually) with 4 amazing early career scientists? 📌Don't forget to register: harvard.zoom.us/webinar/regi... 📅The mini-Symposium is happening in 5 days!
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Christine Cucinotta @chrstne.bsky.social · 06/09/2023
We will have a Fragile Nucleosome seminar at 9am PDT on 13th September! Register here: harvard.zoom.us/webinar/regi...
Seminar on 13th September with Sahin Naqvi and Melissa Harrison
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