Sign in

Rodrigo Sánchez Martínez

@rodrisanchez95.bsky.social
172 followers 264 following 24 posts

Postdoc at @tum.de studying phage-host interactions in the gut. Phages, microbial ecology, cycling, and more.

PostsRepliesMedia
Reposted by Rodrigo Sánchez Martínez
Joshua Weitz @joshuasweitz.bsky.social · 01/09/2026
Delighted to share news that our preprint “Slower-than-exponential viral decay is prevalent and can reshape virus-microbe dynamics” is now online, led by Akash Arani (UMD-BEES PhD), Paul Fremont (UMD-Biology postdoc) and Emma Wachter (former UMD Honors Bio student) www.biorxiv.org/content/10.6...
Examples of viral decay curves spanning biphasic (red), exponential (blue-dashed) fit to data (black points). ~50% are better represented by biphasic rather than exponential.

https://www.biorxiv.org/content/10.64898/2026.08.27.747580v2.full.pdf
32210
Reposted by Rodrigo Sánchez Martínez
Joshua Weitz @joshuasweitz.bsky.social · 15/07/2026
Bacteriophage continue to have so much to teach us. It's in our interest to understand how they work and impact human & environmental health. New joint work led by @mariandm.bsky.social & @rantahan.bsky.social inferring single-cell latent period & burst size heterogeneity from population dynamics.
science.org
Inferring single-cell heterogeneity of bacteriophage lysis-associated life-history traits from population-scale dynamics
Theory-guided experiments reveal single-cell heterogeneity of lysis-associated bacteriophage traits from population scale data.
26229
Reposted by Rodrigo Sánchez Martínez
Nature @nature.com · 15/07/2026
A ketogenic diet promotes tumour growth in the small intestine in susceptible mice go.nature.com/3TB3Cge
go.nature.com
A high-fat, low-carbohydrate diet can feed intestinal tumours
A ketogenic diet promotes tumour growth in the small intestine in susceptible mice. In people, diet advice might need to be tailored to individual cancer risks.
04713
Reposted by Rodrigo Sánchez Martínez
APC Microbiome Ireland @apcmicrobiomeirel.bsky.social · 26/06/2026
How do you classify a new phage? A new paper in 𝐏𝐋𝐎𝐒 𝐂𝐨𝐦𝐩𝐮𝐭𝐚𝐭𝐢𝐨𝐧𝐚𝐥 𝐁𝐢𝐨𝐥𝐨𝐠𝐲 shares 10 tips on genome completeness, ANI, marker genes and structure. @colinhillucc.bsky.social @plos.org @uccmicrobiology.bsky.social 📰 buff.ly/XNE0S3X #Microbiome #Phage #Bacteriophage #Virome #Phagesky
Graphic titled "Ten quick tips for classifying unknown bacteriophage" showing ten illustrated panels with brief tips (confirm it's a virus; perform genome QC; run taxonomic tools; know databases; check cutoffs; use marker genes; use structure & synteny; determine hosts; mind the environment; don't
2103
Reposted by Rodrigo Sánchez Martínez
César de la Fuente @delafuentelab.bsky.social · 19/06/2026
Our paper, “Deep learning reveals antimicrobial peptides within prions,” is now published in Nature Microbiology @natureportfolio.nature.com. We used AI to ask an unexpected question: could proteins best known for their role in fatal neurodegenerative diseases encode molecules that fight infection?
1105
Reposted by Rodrigo Sánchez Martínez
microBIO @microbioblog.bsky.social · 19/06/2026
El idioma “virus” existe: cómo se comunican entre sí para infectar bacterias theconversation.com/el-idioma-vi...
theconversation.com
El idioma “virus” existe: cómo se comunican entre sí para infectar bacterias
A veces, quienes menos esperamos que “hablen” tienen mucho que decir, como es el caso de los virus que se comunican entre sí para decidir si es el momento idóneo de infectar a una bacteria o si convie...
176
Rodrigo Sánchez Martínez @rodrisanchez95.bsky.social · 12/06/2026
Mindblowing 🤯
010
Reposted by Rodrigo Sánchez Martínez
MPI for Evolutionary Biology @mpi-evolbio.bsky.social · 01/06/2026
New in Science Advances: A bacteriophage stayed genetically stable for months, then evolved rapidly in a new microbial community. www.evolbio.mpg.de/3884217/viru... @jeroenmeijer.bsky.social @paulbrainey.bsky.social @uni-jena.de @utrechtuniversity.bsky.social @bedutilh.bsky.social
1187
Rodrigo Sánchez Martínez @rodrisanchez95.bsky.social · 30/05/2026
La última revolución: investigadores españoles logran cocinar geles de lactato, el maná de los ciclistas para disputar el Tour de Francia. Vía @elpais.com
elpais.com
000
Reposted by Rodrigo Sánchez Martínez
Nature Microbiology @natmicrobiol.nature.com · 27/05/2026
Out Now! Temperate phages enhance bacterial host fitness via RNA-guided flagellar remodelling #MicroSky
go.nature.com
Temperate phages enhance bacterial host fitness via RNA-guided flagellar remodelling
Nature Microbiology, Published online: 27 May 2026; doi:10.1038/s41564-026-02355-xThe prophage of a clinical Enterobacter isolate uses an RNA-guided transcription factor to alter flagellar composition, leading to enhanced bacterial motility and improved gut colonization in a mouse model.
02810
Reposted by Rodrigo Sánchez Martínez
Jakob T Rostøl @jakob-tr.bsky.social · 20/05/2026
Like a prophage being awakened from its slumber, the phage field has seen a lot of renewed activity during the last decade. Check out our new @natrevmicro.nature.com review on the temperate phage life cycle here to stay up-to-date 🧫🦠 www.nature.com/articles/s41...
nature.com
Revisiting the life cycle of temperate phages - Nature Reviews Microbiology
The life cycle of temperate bacteriophages involves lytic or lysogenic cycles and has historically served as a model for studying genetic regulation. This Review provides an updated overview of these ...
07234
Reposted by Rodrigo Sánchez Martínez
Luisa De Sordi @luisadesordi.bsky.social · 18/05/2026
I had fun writing a short commentary on the importance of integrating prophage biology into microbiome research 🦠 Now out in @cp-cellhostmicrobe.bsky.social #microbiomesky #phagesky www.cell.com/cell-host-mi...
cell.com
Making room for gut prophages in human health
Prophages are pervasive in the human gut yet largely overlooked in microbiome research, despite substantial functional potential. Emerging evidence indicates that prophages regulate bacterial fitness,...
01914
Reposted by Rodrigo Sánchez Martínez
Magdalena Skipper @magdalenaskipper.bsky.social · 08/05/2026
Happy 100th birthday to Sir David Attenborough! 🎉 An inspiration to me & millions of others around the globe & across the generations! We share more than our passion for the natural world but also a deep appreciation for ceramics! His collection is magnificent! 🧪 www.nature.com/immersive/d4...
nature.com
A life in pictures: Celebrating Attenborough at 100
As the British naturalist celebrates a milestone birthday, we take a look at how his work has shaped science.
26023
Reposted by Rodrigo Sánchez Martínez
Rob Edwards @linsalrob.bsky.social · 06/05/2026
Want to find #prophage in your #bacteria genomes? We built PhiSpy a long time ago, and now we've created a new web page for it: linsalrob.github.io/PhiSpyWeb/ Best of all, the data never leaves your computer! #phage #phagesky
linsalrob.github.io
PhiSpyWeb – Browser-based Prophage Prediction
Browser-based prophage prediction using PhiSpy, Pyodide, and WebAssembly
06827
Reposted by Rodrigo Sánchez Martínez
Nature Reviews Microbiology @natrevmicro.nature.com · 30/04/2026
ICYMI: New online! Phage host range: determinants, dynamics and applications
dlvr.it
Phage host range: determinants, dynamics and applications
Nature Reviews Microbiology, Published online: 23 April 2026; doi:10.1038/s41579-026-01306-xComprehensive assessment of the host range of phages is a prerequisite for their safe and effective use in multiple applications but is rarely undertaken. This Review outlines the molecular and ecological determinants of phage host range and discusses the importance of these determinants for developing phage-based applications.
063
Reposted by Rodrigo Sánchez Martínez
Esteban Bustos-Caparros @ebustos-caparros.bsky.social · 22/04/2026
Check out our latest preprint!!! We report the LTPlus, a manually curated and aligned database of ~87k best-quality 16S rRNA gene sequences collected from LTP, NCBI, GTDB, and SILVA databases. We also developed the OPUcheck tool to automate the OPU approach. www.researchsquare.com/article/rs-9...
researchsquare.com
A pipeline for improved 16S rRNA gene-based phylogeny and diversity analyses of Bacteria and Archaea
The LTP database compiling 16S rRNA gene sequences of all type strains of Bacteria and Archaea has served taxonomists for two decades. Here we report the LTPlus, a manually curated and aligned databas...
073
Reposted by Rodrigo Sánchez Martínez
EL PAÍS América @elpaisamerica.bsky.social · 23/04/2026
Bodegas, un tesoro extraterrestre y un castillo medieval convierten a Villena en una alternativa al circuito turístico de Alicante dozz.es/vrikle
dozz.es
Bodegas, un tesoro extraterrestre y un castillo medieval convierten a Villena en una alternativa al circuito turístico de Alicante
011
Reposted by Rodrigo Sánchez Martínez
European Space Agency @esa.int · 05/04/2026
OK this is cool. The first time humans have seen the whole Mare Orientale on the far side of the Moon with their own eyes. See flic.kr/p/2s5HA2X 🧪🔭
The Moon as seen by Artems II on 4 April 2026. Mare Orientale is seen side on as the feature narrow feature on the right limb of the Moon, just past the darker blob of crater Grimaldi.
151645487
Reposted by Rodrigo Sánchez Martínez
José R Penadés @jrpenades.bsky.social · 31/03/2026
This paper started as an idea @albertomarina.bsky.social had many years ago… which of course means he was right all along 😄. Some of us just needed a few years (and a lot of experiments) to catch up. Grateful (and slightly humbled) to be part of this. Thanks Alberto! www.cell.com/cell/fulltex...
cell.com
Phages communicate across species to shape microbial ecosystems
Gallego-del-Sol et al. show that arbitrium-coding phages can sense non-cognate peptide signals from other phages to regulate lysis-lysogeny decisions. This crosstalk affects lysis-lysogeny outcomes of...
27647
Reposted by Rodrigo Sánchez Martínez
bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 29/03/2026
Gut microbiota within-host evolution enforces colonization resistance against enteric infection www.biorxiv.org/content/10.64898/20…
084
Rodrigo Sánchez Martínez @rodrisanchez95.bsky.social · 21/03/2026
KING
010
Reposted by Rodrigo Sánchez Martínez
Vivek Mutalik @vivekmutalik.bsky.social · 21/03/2026
Excited to share this review🔔, we spent sometime thinking about phage–microbiome–immune–oncology axis for phage therapy in cancer! #phage #phagesky Phage therapy in oncology: opportunities for cancer prevention and treatment: Trends in Molecular Medicine www.cell.com/trends/molec...
cell.com
Phage therapy in oncology: opportunities for cancer prevention and treatment
Bacteriophages (phages) are emerging as programmable biological therapeutics in oncology, extending beyond their traditional antimicrobial applications. This review proposes a phage–microbiome–immune–...
0116
Reposted by Rodrigo Sánchez Martínez
Alvaro San Millan @sanmillan.bsky.social · 13/03/2026
Final version of our last paper is out! www.nature.com/articles/s41...
nature.com
Plasmids promote antimicrobial resistance through insertion sequence-mediated gene inactivation - Nature Microbiology
Inactivation of chromosomal genes through plasmid-encoded IS elements is an extended mechanism of antimicrobial resistance evolution in bacteria.
610861
Reposted by Rodrigo Sánchez Martínez
Cameron Thrash @jcamthrash.bsky.social · 09/03/2026
Illuminating the newly produced viruses within the virosphere with BONCAT and single virus genomic sequencing technologies academic.oup.com/ismecommun/a... #jcampubs
043
Reposted by Rodrigo Sánchez Martínez
Jens Hör @jenshoer.bsky.social · 26/02/2026
Like bacteria, phages use sRNAs to regulate gene expression! Out today in @cp-trendsmicrobiol.bsky.social, @mvelascogomariz.bsky.social and I highlight a recent RIL-seq study from the @saharmelamed.bsky.social lab that looked into posttranscriptional regulation of lambda! tinyurl.com/lambda-RIL-seq
tinyurl.com
Unraveling posttranscriptional regulatory networks in phage infection
Phages employ sophisticated transcriptional regulatory networks to optimize replication. Recently, Silverman et al. used RIL-seq (RNA interaction by l…
13320
Reposted by Rodrigo Sánchez Martínez
Maliheh Mehrshad @mehrshmali.bsky.social · 20/02/2026
Phage–host interactions are a key driver of microbial ecology, but observing them in nature is hard! With metaHi-C, we detect freshwater phage–host pairs and link their infection dynamics to evolution. Together with @nadal-molero.bsky.social & Ana Martin-Cuadrado www.biorxiv.org/content/10.6...
13518
Reposted by Rodrigo Sánchez Martínez
bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 20/02/2026
Eco-evolutionary dynamics of active virus-host interactions in a freshwater lake: revealed through metaHi-C www.biorxiv.org/content/10.64898/20…
045
Reposted by Rodrigo Sánchez Martínez
Science Magazine @science.org · 16/02/2026
Researchers report creating RNAs that can generate a sort of mirror image of themselves and use that template to generate the original. Learn more: scim.ag/46F2BHN
Boosting origin of life theory, RNA comes close to copying itself
Some RNA molecules can create their own mirror images, suggesting similar molecules could have sparked life
06413
Rodrigo Sánchez Martínez @rodrisanchez95.bsky.social · 09/02/2026
Double Marie Curie win! My lab and life partner, @alopezm.bsky.social, and I have both been awarded MSCA Fellowships with @baerboletta.bsky.social. Exciting times ahead! 🚀
3104
Reposted by Rodrigo Sánchez Martínez
Jotham Suez (SuezLab@JHU) @suez.bsky.social · 04/02/2026
It's increasingly clear that commensal viruses play important roles in human health, but how do you study them? Our review "Tools and approaches to study the human gut virome: from the bench to bioinformatics" is out today in mSystems! journals.asm.org/doi/10.1128/... @haleybiont.bsky.social
A figure from the paper that provides an overview of available culture-dependent and culture-independent approaches for characterizing the human gut virome. Both culture-dependent and culture-independent approaches should be used to study the gut virome. At the bench, many protocols have been adapted to enrich viruses in a sample and isolate them using a sensitive host. Once a virus is isolated, various assays can be used to characterize how the virus interacts with its bacterial host. On the command line, viral genomes can be predicted and viral taxonomy can be identified within a sample. Once procured, multiple tools can be used to annotate viral genomes for predicted gene content and viral lifestyle and predict bacterial host taxonomy.
32411
Reposted by Rodrigo Sánchez Martínez
Microbiome Virtual International Forum @microbiomevif.bsky.social · 23/01/2026
It's Friday! ...and a new #MVIF program is out! 🤩 Free registration: cassyni.com/s/mvif-46 Highlights: 🇺🇸 Rebecca L. Knoll 🇯🇵 Akito Sakanaka Keynote: 🇺🇸 @simrouxvirus.bsky.social ⭐️ Talks: 🇦🇺 @jeremyjbarr.bsky.social 🇨🇦 @erikbakkeren.bsky.social 🇨🇳 Guanxiang Liang
mvif 46 program
11211
Reposted by Rodrigo Sánchez Martínez
Aaron Whiteley @aaronwhiteley.bsky.social · 18/01/2026
I’m thrilled to share our work on phage triggers of the bacterial immune system in its final form @natmicrobiol.nature.com www.nature.com/articles/s41...
nature.com
A phage protein screen identifies triggers of the bacterial innate immune system - Nature Microbiology
A library of 400 phage protein-coding genes is used to find a trove of antiphage systems, revealing systems that target tail fibre and major capsid proteins.
210450
Reposted by Rodrigo Sánchez Martínez
Clara Torres-Barceló @clara-inrae.bsky.social · 14/01/2026
#microsky #phagesky #phage At last! Great to see this one out: journals.plos.org/plospathogen... Here, we discovered a nested phage-bacteria network despite their high genetic and ecological diversity. Kudos to everyone involved, especially @chloe-feltin.bsky.social ! @phimresearch.bsky.social
journals.plos.org
Ecological ubiquity and phylogeny drive nestedness in phages–bacteria networks and shape the bacterial defensome
Author summary Viruses that infect bacteria, known as phages, are part of microbial communities and influence the abundance, diversity, and traits of their hosts. In an agriculture-related context, th...
0198
Reposted by Rodrigo Sánchez Martínez
Julia Frunzke @frunzkelab.bsky.social · 14/01/2026
Happy to share our recent preprint: "DNA-intercalating antiphage molecules trigger abortive infection through mutual destruction and synergize with bacterial immunity" www.biorxiv.org/content/10.6... @spp2330.bsky.social, @mibinet.bsky.social, @dfg.de @hhu.de @fzj.bsky.social
24526
Rodrigo Sánchez Martínez @rodrisanchez95.bsky.social · 09/01/2026
Two fantastic papers published back-to-back in @natmicrobiol.nature.com show that strictly lytic phages can persist intracellularly for long periods of time. Very much in line with ideas we had suggested in a recent study. Highly recommended reads 👇 www.nature.com/articles/s41...
nature.com
Client Challenge
0128
Reposted by Rodrigo Sánchez Martínez
Manuel Martínez-García @m-martinez-microbe.bsky.social · 07/01/2026
Check the consensus level of different techniques used to unveil the viral diversity from nature in our latest paper link.springer.com/article/10.1...
001
Reposted by Rodrigo Sánchez Martínez
Esteban Bustos-Caparros @ebustos-caparros.bsky.social · 06/12/2025
Happy to share our latest paper focused on the effect of uneven sequencing depth in intraspecies diversity estimates (nucleotide diversity and ANIr) using environmental and synthetic metagenomes academic.oup.com/ismecommun/a...
academic.oup.com
Uneven sequencing (coverage) depth can bias microbial intraspecies diversity estimates and how to account for it
Abstract. An unbiased and accurate estimation of intraspecies diversity, i.e., the extent of genetic diversity within species (or microdiversity), is cruci
043
Reposted by Rodrigo Sánchez Martínez
bioRxiv SysBio @biorxiv-sysbio.bsky.social · 23/10/2025
Context-Dependent Metabolic Adaptation in Microbial Communities: From Monocultures to Complex Ecological Interactions www.biorxiv.org/content/10.1101/202…
001
Reposted by Rodrigo Sánchez Martínez
Joshua Weitz @joshuasweitz.bsky.social · 23/10/2025
In a break from recent themes & in honor of World Phage Week (Oct 22-28), some reflections on the world of bacteria and phage, part of a short series explaining the rationale for why we have invested so much time in exploring when microbes get sick too. joshuasweitz.substack.com/p/happy-worl...
joshuasweitz.substack.com
Happy World Phage Week to All Who Celebrate
Microbes get sick too - infected by bacteriophage or simply ‘phage’. A first post in a series on the hidden world of phage & how they transform human and environmental health.
0114
Reposted by Rodrigo Sánchez Martínez
Yifan ZHOU @yifanzhou.bsky.social · 17/10/2025
Our work on viruses and virus satellites of haloarchaea and their DPANN symbionts is out today in Nature Microbiology! @mkrupovic.bsky.social @deemteam.bsky.social @anagtz.bsky.social www.nature.com/articles/s41...
nature.com
Viruses and virus satellites of haloarchaea and their nanosized DPANN symbionts reveal intricate nested interactions - Nature Microbiology
An exploration of the viromes of haloarchaea and their ultra-small DPANN symbionts reveals plasmid-derived satellites of viruses from both archaeal groups, highlighting the complexity of nested symbio...
36326
Reposted by Rodrigo Sánchez Martínez
Jeremy Barr @jeremyjbarr.bsky.social · 15/10/2025
Very excited to share the latest work from our lab, which was published today in Nature! nature.com/articles/s41... PhD graduate and now post-doc Sofia Dahlman, along with co-senior author Sam Forster from The Hudson and other researchers from our lab and others.
nature.com
Isolation, engineering and ecology of temperate phages from the human gut - Nature
Human host-associated cellular products may act as induction agents for bacteriophages.
718775
Reposted by Rodrigo Sánchez Martínez
Eric Topol @erictopol.bsky.social · 02/10/2025
How exercise promotes the immune system vs cancer, working through a gut bacteria metabolite www.cell.com/cell/abstrac...
622170
Reposted by Rodrigo Sánchez Martínez
ETH Zurich @ethz.ch · 26/09/2025
It is not only antibiotics but also certain viruses – known as bacteriophages – that can kill off pathogenic bacteria. However, Switzerland lacks the legal framework for the use of these viruses in therapy. What would need to change? Researcher Alexander Harms explains. ethz.ch/en/news-and-...
ethz.ch
“Treatment with bacteriophages can combat antibiotic-resistant infections, but Swiss patients lack access”
It is not only antibiotics but also certain viruses – known as bacteriophages – that can kill off pathogenic bacteria. However, Switzerland lacks the legal framework for the use of these viruses in th...
0196
Reposted by Rodrigo Sánchez Martínez
Rafael Laso Pérez @gecko1990.bsky.social · 23/09/2025
Excited to highlight our News & Views on the article by Torres et al. from @delafuentelab.bsky.social team 🚀 Archaea could help to discover new antibiotics! Read it here: www.nature.com/articles/s41...
nature.com
Deep-mining the archaeal proteome for antibiotics - Nature Microbiology
A deep-learning algorithm unravels a collection of archaeasins, peptides from the archaeal proteome with potential antimicrobial activity and implications for the development of next-generation antibiotics
153
Reposted by Rodrigo Sánchez Martínez
Jeremy Barr @jeremyjbarr.bsky.social · 24/09/2025
Excited to annouce the latest research published by our lab, which is led by Dinesh Subedi and is out today in Nature Microbiology. www.nature.com/articles/s41...
nature.com
Rational design of a hospital-specific phage cocktail to treat Enterobacter cloacae complex infections - Nature Microbiology
The Entelli-02 phage product containing five phages has frontline potential to address infections caused by the multidrug-resistant Enterobacter cloacae complex.
36925
Reposted by Rodrigo Sánchez Martínez
Nature Microbiology @natmicrobiol.nature.com · 23/09/2025
Deep-mining the archaeal proteome for antibiotics News & Views by Rafael Laso-Pérez @gecko1990.bsky.social @delafuentelab.bsky.social Read it here: rdcu.be/eHNwa
rdcu.be
Deep-mining the archaeal proteome for antibiotics
Nature Microbiology - A deep-learning algorithm unravels a collection of archaeasins, peptides from the archaeal proteome with potential antimicrobial activity and implications for the development...
1197
Reposted by Rodrigo Sánchez Martínez
Esteban Bustos-Caparros @ebustos-caparros.bsky.social · 18/09/2025
Excellent work done by Borja, Miguel, and Kostas! Differences in metagenome coverage may confound abundance-based and diversity conclusions and how to deal with them academic.oup.com/ismecommun/a...
academic.oup.com
Differences in metagenome coverage may confound abundance-based and diversity conclusions and how to deal with them
Abstract. The importance of rarefying ecological or amplicon sequencing data to a standardized level of diversity coverage for reliable diversity compariso
021
Reposted by Rodrigo Sánchez Martínez
pepa-anton.bsky.social @pepa-anton.bsky.social · 11/09/2025
A new work on how context matters... from the PhD Thesis of Rodrigo the Great
031
Reposted by Rodrigo Sánchez Martínez
Asunción de los Rios @asundelosriosbsky.bsky.social · 11/09/2025
Happy to share our upcoming paper on pioneer microbial communities, including viruses, establishing after glacier retreat, result of a great collaboration @ua.es @mncn-csic.bsky.social @univgirona.bsky.social @pepa-anton.bsky.social @estherrubioport.bsky.social academic.oup.com/ismecommun/a...
academic.oup.com
Short-term virus-host interactions and functional dynamics in recently deglaciated Antarctic tundra soils
Abstract. Long-term chronosequence studies have shown that, as glaciers retreat, newly exposed soils become colonized through primary succession. To determ
045
Rodrigo Sánchez Martínez @rodrisanchez95.bsky.social · 11/09/2025
🦠➡️🧬 Community context matters! In the second part of my PhD, we show how microbial complexity drives phage–bacteria ecology & evolution. Check out the preprint 👇🏼
1104