Research updates, scholarly work, code and datasets from the Prism team. Filter by topic and by the kind of output you are after.

Dynamic structural data, models, and language to become standard across the field. At scale, this is how we predict conformational ensembles across all of biology.

Podcast Episode · The Tortured Proteins Department · September 8 · 27m

Dynamic structural data, models, and language to become standard across the field. At scale, this is how we predict conformational ensembles across all of biology.

diffuse scattering reproducible, yay!

Mdx2 is a powerful and open-source toolkit for diffuse data processing.

An Ensemble Dataset of over 60,000 Structures

In preparation for hierarchical hetereogeneity encoding, BANDICOOT has a new, more intuitive display mode for alternate conformations.

A playground for the PDBx/mmCIF file exploration, a look at the current proposal for encoding correlated heterogeneity

Towards a complete forward model of diffuse scattering

Reviving Coot 0.9 for MacOS Tahoe as Bandicoot, a bespoke and integrated molecular modeling environment.

Leakage-free Training to Predict Protein Function

diffUSE has 15 repositories available. Follow their code on GitHub.

Structural biology increasingly relies on machine learning-based structure predictors, enabling accurate atomic-level structure prediction at scale. However, predicting conformational ensembles…

ABOUT DIFFUSE The DiffUSE Project is building open infrastructure to study protein dynamics using experimental data. The project spans wet-lab collaborators, computational scientists, ML researchers,…

The DiffUSE Project

A new nonprofit called Radial is launching with at least $500 million to modernize the scientific process for the AI era.

MD simulations of changes in diffuse scattering depending on ligand binding

The Diffuse Project

Going up a level from data generation to think about the data systems we design and embed