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Nikita Gudimchuk

@nikitagudimchuk.bsky.social
52 followers 77 following 2 posts

Studying cytoskeleton and mitosis, focused on tubulin and microtubules. Curious about bacterial division and Ftsz. Interested in computational modeling, all kinds of microscopy, experimental and theoretical biophysics, bio- and med- chemisty

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Reposted by Nikita Gudimchuk
Eugene Katrukha 🇺🇦 @ekatrukha.bsky.social · 31/03/2026
The new release of #BigVolumeBrowser (0.1.0) finally adds animation render functionality to it, plus some other navigation improvements and bug fixes. Here is a movie I've made for the microtubule network (via ExM) in different cell types. Contact me if you want it for educational/research purposes.
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Reposted by Nikita Gudimchuk
Aryan Taheri @aryantaheri.bsky.social · 08/05/2026
How do #tubulin dimers assemble and disassemble to form the #microtubule #cytoskeleton? Our recent #cryo-EM structures, published in #ScienceAdvances, demonstrate the processes of tubulin biogenesis and degradation. Click on the video and link below to learn more! www.science.org/doi/10.1126/...
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pilarcossio.bsky.social @pilarcossio.bsky.social · 25/04/2026
Excited so share our theoretical work on cryo-EM vitrification and recovering ensemble distributions!!
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Reposted by Nikita Gudimchuk
The EMBO Journal @embojournal.org · 26/03/2026
Proper chromosome segregation requires microtubule end capture by outer kinetochore @vladimirvolkov.bsky.social et al show that oligomerizing interactions of Ndc80 & Ska complexes underlie their ability to stabilize microtubule ends against detachment & shortening link.springer.com/article/10.1...
link.springer.com
Microtubule end stabilisation by cooperative oligomers of Ska and Ndc80 complexes - The EMBO Journal
During mitosis, properly aligned chromosomes stabilise microtubule ends with the help of kinetochores to ensure timely segregation of chromosomes. Microtubule-binding components of the human outer kin...
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Reposted by Nikita Gudimchuk
Vladimir Volkov 🇺🇦 @vladimirvolkov.bsky.social · 25/03/2026
In memoriam Fazly Ataullakhanov was a biophysicist with a rich heritage, and a strong scientific legacy. An ethnic Tadjik, born in Samarkand (Soviet Uzbekistan), educated in Moscow, made his best scientific contributions in English, collaborating with international researchers in the USA. /1
A monochrome portrait of Fazly Ataullakhanov - a man in his fifties sitting in a seminar room
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Reposted by Nikita Gudimchuk
Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 17/03/2026
AlphaFold database has entered the era of complexes. Together with NVIDIA, DeepMind and EBI, we use ColabFold, OpenFold and MMseqs2-GPU to predict ~31 million complexes (homo & hetro-dimers) resulting in 1.8 million high-quality predictions 📄 research.nvidia.com/labs/dbr/ass... 🌐 alphafold.ebi.ac.uk
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Nikita Gudimchuk @nikitagudimchuk.bsky.social · 14/03/2026
Our new paper is featured on the Inside Back Cover of Angewandte Chemie Int. Ed.! doi.org/10.1002/anie... We show that coumarin-30, a classic laser dye, can serve as a versatile fluorescent probe for tubulin, enabling site-resolved detection of diverse ligands. doi.org/10.1002/anie...
doi.org
Inside Back Cover: Coumarin‐30 Enables Site‐Resolved Detection of Tubulin Ligands by Microscale Thermophoresis
In the Research Article (e17086), Igor V. Trushkov, Olga A. Ivanova, Nikita B. Gudimchuk, and co-workers establish coumarin-30 as a new versatile fluorescent probe for tubulin, enabling site-resolved...
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Reposted by Nikita Gudimchuk
Alexey Amunts @amunts.bsky.social · 31/10/2025
What a gem from @dudinlab.bsky.social @gautamdey.bsky.social @centriolelab.bsky.social in Cell! Expansion microscopy atlas of >200 eukaryotes comparing cytoskeletal architectures revealing structures not seen before. Stunning visualisation! Exactly the kind of transformative cell biology we need.
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Journal of Cell Biology @jcb.org · 13/08/2025
Narozna et al @gorbskylab.bsky.social uncover a high-frequency, chromosome 12-specific mis-segregation error in iPSCs. Eroded 12p arms lead to bridging & micronucleation, enabling widespread trisomy 12. A slight growth advantage allows trisomic cells to persist & dominate rupress.org/jcb/article/...
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Reposted by Nikita Gudimchuk
Stan Yatskevich @stanislauy.bsky.social · 15/07/2025
Happy to share our latest work on the structure and assembly of holocentric kinetochores! Huge thanks to Ines for a very fruitful collaboration, Claudio for all the support, and congratulations to Christine and all co-authors! www.biorxiv.org/content/10.1...
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Vladimir Volkov 🇺🇦 @vladimirvolkov.bsky.social · 07/07/2025
New preprint from the lab - the first paper made (almost) entirely here @qmul.bsky.social We report how human outer kinetochore complexes Ndc80 and Ska form cooperative oligomers, that together stabilise microtubule ends against shortening. www.biorxiv.org/content/10.1... Key results below: (1/7)
biorxiv.org
Microtubule end stabilisation by cooperative oligomers of Ska and Ndc80 complexes
During mitosis, properly aligned chromosomes stabilise microtubule ends with the help of kinetochores to ensure timely segregation of chromosomes. Microtubule-binding components of the human outer kinetochore, such as Ndc80 and Ska complexes, are present in multiple copies and together bind several microtubule ends, creating a highly multivalent binding interface. Whereas Ndc80:Ndc80 and Ndc80:microtubule binding is crucial for interface stability, Ndc80 alone in absence of Ska is unable to support stable kinetochore-attachments. Using cryoET, we demonstrate that oligomeric Ndc80:Ska assemblies stabilise microtubule ends against shortening by strengthening lateral contacts between tubulin protofilaments at microtubule plus-ends. We further identify a point mutation within the SKA1 microtubule-binding domain that does not affect microtubule-binding of individual Ska molecules, but does abolish Ska:Ska interactions. Finally, we report that oligomerisation of Ska, in a cooperative fashion together with the Ndc80, is necessary to maintain stable microtubule attachments both in vivo and in vitro. ### Competing Interest Statement The authors have declared no competing interest. BBSRC, BB/X014975/1, BB/W019698/1 Wellcome Trust, https://ror.org/029chgv08, 308895/Z/23/Z
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A/Prof Sam Stehbens PhD (She/Her) @samstehbens.bsky.social · 09/11/2024
it never gets old...... #microtubule dynamics - the fireworks of EB comets #microscopy
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Maxim Igaev @maxotubule.bsky.social · 03/06/2025
Excited to share our latest work in @pnas.org! Combining simulations and cryo-ET, we reveal how microtubules decide between growth and shortening. doi.org/10.1073/pnas... @maksimkalutskii.bsky.social @vladimirvolkov.bsky.social @compbiophys.bsky.social @mpi-nat.bsky.social @qmul.ac.uk @dundee.ac.uk.
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Marin Barisic @barisiclab.bsky.social · 27/05/2025
Check out our latest research now out @embojournal.org. Huge shout-out to our postdocs Susana Eibes and Bhagya Lakshmi and the rest of the team for their amazing work! 1/11
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Christophe 🔬 Leterrier @christlet.bsky.social · 09/05/2025
Great new method to assess the size and shape of biomolecules. Also, the figures are incredibly beautiful 🤩
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Alexandre Dumoulin @axonsalex.bsky.social · 30/04/2025
This time-lapse captures 17 hours of axonal growth from a chicken dorsal root ganglion explant, visualized through the actin cytoskeleton using live confocal imaging. I just submitted this video to the Nikon Small World in Motion competition. Today is the last day to upload yours! 😉 🧪
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Tim Stearns @stearnslab.bsky.social · 28/03/2025
Alex Long, the last postdoc from my lab at Stanford, is starting her own lab, continuing her beautiful work on evolutionary cell biology using chytrid fungi as a model. Check it out! alonglab.org
alonglab.org
Long Research Group
Long Research Group - Univ. Kentucky
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Reposted by Nikita Gudimchuk
Manuel Thery @manuelthery.bsky.social · 05/03/2025
Unique opportunity to join the CytoMorpho Lab (in Paris ❤️) as a postdoc to work on the self-organization and polarization of reconstituted networks made of microtubules, motors and actin filaments in vitro. Experience required. Please Repost 🙏 thanks !
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Reposted by Nikita Gudimchuk
Nemo Andrea @cursed-tubule.bsky.social · 07/03/2025
It would only be appropriate to post about the #geometrynodes #microtubule here too. For a full introduction, I have prepared the world's least professional youtube video. www.youtube.com/watch?v=AYUy...
youtube.com
Procedural Microtubule | Blender 3.1 Geometry Nodes
YouTube video by Nemo Andrea
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Nikita Gudimchuk @nikitagudimchuk.bsky.social · 01/03/2025
In our new preprint: biorxiv.org/content/10.1... we find that the tilted stalk of the NDC80 complex—a crucial component of the kinetochore—may be responsible for its asymmetric grip on microtubules. This conclusion may also extend to other MAPs. #Microtubule #Biophysics #Kinetochore
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Cytoskeleton Journal @cytoskeljournal.bsky.social · 20/02/2025
Attention structural biologists!!! #CYTOSKELETON has a #specialissue that we are putting together on the "Structures of #microtubule and microtubule-related proteins". Submission deadline is April 1, 2025. Submit today. It is #FREE to publish in CYTOSKELETON.
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