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Matti Pronker

@mfpronker.bsky.social
388 followers 485 following 107 posts

Junior group leader @Sanquin-forlife.bsky.social - Structural biology, protein engineering, #cryoEM ❄️🔬, #crystallography 💎 - views are my own

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Matti Pronker @mfpronker.bsky.social · 24/09/2026
I did something 😈
Centrifuge
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Nature Communications @natcomms.nature.com · 22/09/2026
Co-authors @merylhaas.bsky.social, @danielhurdiss.bsky.social from @utrechtvirology.bsky.social and others show that the norovirus  NS3 protein forms an RNA-engaging molecular motor that may transport viral RNA during infection. #Virology #CryoEM dlvr.it/TVbP01
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Matti Pronker @mfpronker.bsky.social · 17/09/2026
Die dwazen in Den Haag denken dat accijnsverlaging op brandstof het goede antwoord is op de gestegen brandstofprijzen. Je hoeft geen econoom te zijn om te begrijpen dat je zo de vraag in stand houdt, terwijl die juist omlaag moet om in balans te komen met het geslonken aanbod. Denk ook aan de CO2...
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Matti Pronker @mfpronker.bsky.social · 11/09/2026
Congratulations to all ERC StG recipients from the previous round! I wonder what this cackling proposal is all about though 🤣😂😅
List of ERC StG recipients
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Matti Pronker @mfpronker.bsky.social · 11/09/2026
Cancelled Disney Plus (again) after they gave in to pressure from the Trump administration (again)... www.nbcnews.com/politics/tru...
nbcnews.com
Jimmy Kimmel says show won’t air James Talarico interview on TV, citing FCC threats
The late-night host said his interview with the Texas Democratic Senate candidate would air instead on YouTube.
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Matti Pronker @mfpronker.bsky.social · 28/08/2026
Milestone for my new lab: first completely computationally designed de novo antibodies that produce and bind to target! 🤖🤖🤖 great work by Karlis Daga-Krumins!!
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Matti Pronker @mfpronker.bsky.social · 27/08/2026
Turns out a common COLD virus' (HKU1 coronavirus) infectiousness is actually directly affected by temperature! Cool work by @julianbuchrieser.bsky.social et al! www.nature.com/articles/s41...
nature.com
Temperature-dependent replication and sensitivity to innate immunity of human coronavirus HKU1 - Nature Communications
Characterization of the human coronavirus HKU1 is limited due to a lack of infection models. Here, the authors develop a cell model to propagate HKU1 and show that, unlike its relative SARS-CoV-2, it ...
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Reposted by Matti Pronker
Alex Guseman @alexguseman.bsky.social · 21/08/2026
Come be my colleague! We are hiring a structural biologist. I have thoroughly enjoyed starting my career here and both department(s) are full of exceptional scientists. apol-recruit.ucsd.edu/JPF04589
apol-recruit.ucsd.edu
Assistant Professor in Structural Biochemistry
University of California, San Diego is hiring. Apply now!
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Sander Schimmelpenninck @schimmelpenninck.bsky.social · 17/08/2026
De boer is een logische mascotte voor veel Nederlanders, die net als de boer graag de ogen sluiten voor de grenzen van de groei. Banger om iets kwijt te raken dan ambitieus genoeg om nieuwe kansen te pakken. www.volkskrant.nl/columns-van-...
volkskrant.nl
De boer is een logische mascotte voor veel Nederlanders die de ogen sluiten voor de grenzen van de groei
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Matti Pronker @mfpronker.bsky.social · 13/08/2026
Nice colander pinhole camera to see the #eclipse, thanks @BBC for the tip! Getting to see it sharp reminded me of aligning the microscope 🤓😅😇 also a great opportunity to discuss astronomical events with the children!
Eclipse viewed through a colander that acts as a pinhole camera
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Matti Pronker @mfpronker.bsky.social · 06/08/2026
Very cool work by Robert, Dan, Raoul et al.!
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Matti Pronker @mfpronker.bsky.social · 20/07/2026
We have a PhD position at Sanquin Research in Amsterdam involving protein engineering, de novo design and antibody development related to bleeding disorders. Please share this with anybody to whom this may be relevant! 🩸 🧬 🧪 🧫 www.sanquin.nl/en/working-a... www.linkedin.com/jobs/view/44...
linkedin.com
Sanquin hiring PhD Candidate: Antibody Therapy for Bleeding Disorders in Amsterdam, North Holland, Netherlands | LinkedIn
Posted 10:24:43 AM. The Division of Research and Lab Services of Sanquin is home to 250 researchers, including over 60…See this and similar jobs on LinkedIn.
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Netherlands Cancer Institute @nkinl.bsky.social · 13/07/2026
Will you be our next junior group leader? Check out how Natalie Scholes, Gordie Watt and @woutoosterheert.bsky.social experience starting their groups at the Netherlands Cancer Institute. Apply before August: www.nki.nl/news-events/... #Vacancy #JuniorPI #ResearchOpportunity #NKI #EarlyDetection
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Matti Pronker @mfpronker.bsky.social · 07/07/2026
🇧🇪⚽️⚽️⚽️⚽️❤️
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Matti Pronker @mfpronker.bsky.social · 06/07/2026
At the FEBS Congress in sunny Maastricht, check out my flash talk in the 'nucleic acids and protein biology' session or poster SP034 if you're here today (Monday)! #biochemistry
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Matti Pronker @mfpronker.bsky.social · 04/07/2026
On the 🚅 to Maastricht for the 50th FEBS congress. The line-up is amazing, looking forward!
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Matti Pronker @mfpronker.bsky.social · 03/07/2026
Lab retreat for the Protein Engineering and Structural Biology (PESB) lab today! Did a nice escape room in Leiden this morning, next up the CORPUS human body museum in Oegstgeest!
PESB labPESB group
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Ján Bíňovský @jbinovsky.bsky.social · 02/07/2026
🔥My first (co)first-author paper is out🔥 The surfaces of Gram+ and Gram- bacteria are markedly different from each other. How are phages equipped to breach the Gram+ envelope❓ 💡We report a baseplate structure uniquely adapted to infect Gram+ S. aureus. A 🧵⬇️ 1/8 #phagesky #cryoEM 🧪
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Daniel Hurdiss @danielhurdiss.bsky.social · 02/07/2026
We are looking for an Assistant or Associate Professor to join us at the @utrechtvirology.bsky.social. Interested in building an independent research programme in a collaborative #virology environment? Please take a look and share with anyone who might be a good fit! www.uu.nl/en/organisat...
uu.nl
Assistant or Associate Professor in Virology
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Matti Pronker @mfpronker.bsky.social · 29/06/2026
Great day at the Dutch Judo Liga (South-West region), representing team Ryu Mackaay from Utrecht 🥋
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Jo Judernatz @jojudernatz.bsky.social · 12/06/2026
Glad to see the work of my PhD on the manchette microtubule now out in @embojournal.org: doi.org/10.1038/s443...
doi.org
SPACA9 and MNMIP1 bridge the seam of spermatid manchette microtubules - The EMBO Journal
The manchette is a transient microtubule (MT)-based structure that is vital for the correct shaping of sperm during spermiogenesis. Throughout spermiogenesis, the manchette retains structural integrity for several days, raising the question of how its MTs are regulated. Here, using cryo-electron tomography of manchettes isolated from rat testes, we find that manchette MT ends are structurally diverse. We show that the MT-binding protein CLASP2 is present throughout the manchette and likely regulates both MT ends. Using cryo-electron microscopy single particle analysis and super-resolution microscopy, we reveal that SPACA9 and MNMIP1 (SH3D21) bind to the seam of manchette MTs from the luminal side. SPACA9 binds to both α- and β-tubulin of protofilament 1 but does not interact directly with protofilament 13, while MNMIP1 binds directly to protofilament 13. MNMIP1 further extends and threads through the MT lattice at the seam. Our study reveals a novel seam MT inner protein complex with a unique binding mode, providing a plausible explanation for MT regulation that maintains manchette integrity over an extended period.
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Matti Pronker @mfpronker.bsky.social · 31/05/2026
Just finished building the lego Krios 5 with my 5yo daughter 🤓 looking forward to using the real ones being set up by @thermofishersci.bsky.social at @utrechtuniversity.bsky.social and @necen.bsky.social in Leiden!
Lego electron microscope
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Matti Pronker @mfpronker.bsky.social · 29/05/2026
Big congrats to @danielhurdiss.bsky.social for winning the sir David Stuart early career award at the #instruct-biennial structural biology conference!!
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Matti Pronker @mfpronker.bsky.social · 29/05/2026
Nice morning run with the 'Instruct run club' through sunny Brussel #instruct-biennial @instruct-eric.bsky.social
StatueParliamentPalaceCiry hall
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Matti Pronker @mfpronker.bsky.social · 28/05/2026
On the 🚂 to Brussel for the Instruct Biennial structural biology conference, looking forward!! 🧬
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Matti Pronker @mfpronker.bsky.social · 26/05/2026
R.I.P. Sonny Rollins 🎷🎵🎶
Sonny Rollins playing tenor saxophone
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Matti Pronker @mfpronker.bsky.social · 20/05/2026
Both Arsenal and Barcelona winning their respective leagues in the same season is pretty sweet ngl ⚽️⚽️ fingers X-ed for the champion's league final!!
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Thomas Dietterich @tdietterich.bsky.social · 13/05/2026
We are implementing a similar policy at @arxiv.bsky.social. If there is incontrovertible evidence of LLM slop in a paper, this means the authors did not take the time to read the LLM output and we can't trust anything else in the paper. Penalty is 1 year ban from arXiv followed by...
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Matti Pronker @mfpronker.bsky.social · 31/03/2026
A wise man once told me you should celebrate the small wins as well as the big. First pcr of the new lab successful!! 😁😁 #still_got_it
DNA gel scan showing a ladder and two bands
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Daniel Hurdiss @danielhurdiss.bsky.social · 27/03/2026
The newly established NeCEN Utrecht is looking for a #cryoEM scientist! www.uu.nl/en/organisat... Work with a new Krios 5 + pFIB and support cutting-edge life science research. 📍 Utrecht | 🗓 Apply by 30 April Please share with your network!
uu.nl
Cryo-electron microscopy scientist
Join our team to contribute to the operation and innovation of state-of-the-art cryo-electron microscopes and empower groundbreaking research.
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Matti Pronker @mfpronker.bsky.social · 25/03/2026
My first time at the Dutch society for thrombosis and hemostasis society (NVTH) symposium, looking forward to hear lots of interesting science and get to know the community!
Photograph of the dunes near Koudekerke
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Matti Pronker @mfpronker.bsky.social · 23/03/2026
Now that we are in a full-blown oil crisis, can we finally just ban these smelly cancer-causing fumes exhausting combustion engine scooters? Swap it for an electric bike (similar price) or scooter, or even better, an old-fashioned muscle-powered bicycle (cheapest, best for health and environment)!
'The honest scooter' cartoon, with exhaust in front of the driver's face.
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Matti Pronker @mfpronker.bsky.social · 13/03/2026
Very cool paper on folding rates for small single protein domains: journals.aps.org/prl/abstract... Now that we know these domains fold very fast (0.7-4 microseconds), it should be possible to simulate this by MD and compare, right? This might be helpful in improving MD force field accuracy.
journals.aps.org
Cooperative Native Contact Formation Facilitates Free Energy Barrier Crossing in Protein Folding
High-temporal-resolution fluorescence measurements reveal how quickly proteins cross energy barriers separating unfolded and folded states.
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Matti Pronker @mfpronker.bsky.social · 17/02/2026
Is there PFAS in baking paper a.k.a. grease-proof? It isn't food so no ingredients are listed. A.I. says there might be. Wouldn't that be pretty insane as you are literally cooking your food on it? Same question for 'wax' programs in car wash stations, shouldn't this be banned??
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Sjors Scheres @sjorsscheres.bsky.social · 16/02/2026
Please spread the word: the Structural Studies Division @mrclmb.bsky.social is looking for a new tenure-track, independent group leader with an exciting plan in any area of Structural (Molecular & Cell) biology, in discovery biology and/or methods development. 🥳 mrc.tal.net/vx/mobile-0/...
mrc.tal.net
Research Group Leader Tenure Track - Structural Studies - LMB 2775 - Medical Research Council
Location: Cambridge. Vacancy: Research Group Leader Tenure Track - Structural Studies - LMB 2775. Closing Date: 16/03/2026, 23:55
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Bijvoet Centre @bijvoet-centre.bsky.social · 17/02/2026
With sadness we share the passing of em. prof. dr. Hans Vliegenthart, founder of the Bijvoet Centre for Biomolecular Research at Utrecht University. His scientific legacy will continue to inspire. In memoriam: www.uu.nl/en/news/in-m...
uu.nl
In memoriam: Hans Vliegenthart
In memoriam: prof. dr. Hans Vliegenthart (April 7, 1936 – February 12, 2026)
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Matti Pronker @mfpronker.bsky.social · 17/02/2026
Happy lunar new year to all those who celebrate!! 🐴
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Matti Pronker @mfpronker.bsky.social · 15/02/2026
'New research mostly starts with the arrival of junior group leaders'. Amen Thijn Brummelkamp!! 🙏
Cover of Dutch chemistry magazine C2W featuring a quotr by scientific director of the Netherlands Cancer Institute (NKI).
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Matti Pronker @mfpronker.bsky.social · 10/02/2026
It feels official now... www.sanquin.nl/en/researche...
sanquin.nl
Protein engineering and structural biology
To understand how proteins function, we need to know their three-dimensional structure. We use two techniques to determine such 3D structures of proteins and their complexes: X-ray crystallography and...
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MRC Laboratory of Molecular Biology @mrclmb.ac.uk · 05/02/2026
Congratulations to former LMB postdoc @mfpronker.bsky.social, who is launching his own independent research group at Sanquin Research where he'll use protein engineering and structural biology techniques to study important blood protein complexes. Best of luck to you Matti! #LMBAlumni
Smiling headshot of Matti Pronker
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Matti Pronker @mfpronker.bsky.social · 04/02/2026
Would recommend, Elena does fantastic science!!
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Matti Pronker @mfpronker.bsky.social · 01/02/2026
I am excited to share that I will be starting my lab @Sanquin-forlife Research in Amsterdam this month! Looking forward to do structural biology and use protein engineering to tackle important questions related to 🩸blood🩸 protein complexes in health and disease. 🧬🧫🔬🧪👨‍🔬 #cryoEM #xtallography
Structure of a FLAG peptide bound to anti-FLAG M2 as determined by X-ray crystallography
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Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 30/01/2026
FoldMason is out now in @science.org. It generates accurate multiple structure alignments for thousands of protein structures in seconds. Great work by Cameron L. M. Gilchrist and @milot.bsky.social. 📄 www.science.org/doi/10.1126/... 🌐 search.foldseek.com/foldmason 💾 github.com/steineggerla...
science.org
Multiple protein structure alignment at scale with FoldMason
Protein structure is conserved beyond sequence, making multiple structural alignment (MSTA) essential for analyzing distantly related proteins. Computational prediction methods have vastly extended ou...
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Joost Snijder @joostsnijder.bsky.social · 19/01/2026
Just got this in the mail from @addgene.bsky.social, recognizing that 100+ labs have now ordered our anti-FLAG-M2 plasmids via their service. @mfpronker.bsky.social www.addgene.org/Joost_Snijder/ pubs.acs.org/doi/full/10....
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Matti Pronker @mfpronker.bsky.social · 01/01/2026
Let's make 2026 a great year!!! ✊️💚
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Matti Pronker @mfpronker.bsky.social · 25/12/2025
Happy holidays everybody!! 🌲
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EMBL Events @events.embl.org · 02/12/2025
#EMBOComp3D has officially begun! 🥳 What are you looking forward to in the next few days?
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Matti Pronker @mfpronker.bsky.social · 02/12/2025
On the train to Heidelberg for the @EMBO workshop #computational_structural_biology, excited to hear about the latest developments in the field and share some recent work!
ICE train interior
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Matti Pronker @mfpronker.bsky.social · 01/12/2025
Utrecht 2025
Sunrise
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Matti Pronker @mfpronker.bsky.social · 21/11/2025
#LifeHack
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