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Leela Ghimire

@leela-bg.bsky.social
76 followers 96 following 7 posts

BBSRC NLD DTP PhD with @proftracypalmer.bsky.social and @kshbeckham.bsky.social labs at Newcastle University, UK Studying Gram positive competitive mechanisms via structural biology, molecular microbiology 💎🔬❄️🦠

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Leela Ghimire @leela-bg.bsky.social · 29/09/2026
Spent last week at the @embo.org protein translocation across membranes workshop in the beautiful Sant Feliu de Guíxols. Grateful for the chance to give a flash talk and present a poster on our work, lots of thoughtful feedback from peers and experts in the field! @mhd-newcastle.bsky.social
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John Innes Centre @johninnescentre.bsky.social · 18/09/2026
DIRECTOR’S BLOG - Future harvests depend on the choices we make now After the challenging 2026 harvest, Prof. @cristobaluauy.bsky.social reflects on how this is a reminder that food security starts long before food reaches our plates. 🧵 1/2
okt.to
Future harvests depend on the choices we make now | John Innes Centre
Harvest has been challenging again this year. Heatwaves, flooding and drought are now regular headlines in the UK and around the world. 2026 is no anomaly: four of the five worst harvests have...
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Basler Lab @basler-lab.bsky.social · 09/09/2026
In our new paper, we uncover how Burkholderia switches from antibacterial T6SS-1 to eukaryotic-targeting T6SS-5. Surprisingly, actively turning off T6SS-1 assembly prevents mitochondrial damage and apoptosis. Congrats @christy-chc.bsky.social and the team! link.springer.com/article/10.1...
link.springer.com
Regulation of Type VI Secretion Systems of Burkholderia during transition to intracellular lifestyle - EMBO Reports
Pathogenic bacteria tightly regulate gene expression in response to environmental cues. In Burkholderia species, the Type VI Secretion Systems (T6SS) mediate interbacterial competition and host cell i...
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Ellie Boardman @ellieboardman.bsky.social · 26/08/2026
Happy to see this one pre-printed - a little more understood about the protein-protein interactions involved in T7SS in mycobacteria 🥳
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Max Jordan @maxljordan.bsky.social · 04/09/2026
Really excited to share our new manuscript on how the #NLR protein #AfsR regulates #Streptomyces antibiotic production - and how we can use its similarity to plant NLR immune receptors to enhance this production! 📄🧵 (1/17) @johninnescentre.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
A conserved NLR activation switch governs global transcriptional control of antibiotic biosynthesis in Streptomyces
Nucleotide-binding and oligomerization domain-like receptors (NLRs) are conserved molecular switches that regulate innate immunity across diverse domains of life. While best known for their roles in i...
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Kate Beckham @kshbeckham.bsky.social · 03/08/2026
Happy to share our recent story on the Type VII secretion system. Here were present new insights into the regulation of secretion mediated by the central pore. Thanks to all authors involved in the work. 🙂
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Kate Beckham @kshbeckham.bsky.social · 10/07/2026
Pleasure to host @gchojnowski.bsky.social here in Newcastle for a seminar and a cryo EM modelling building. Thanks Greg, we all learned a lot!
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Ján Bíňovský @jbinovsky.bsky.social · 02/07/2026
🔥My first (co)first-author paper is out🔥 The surfaces of Gram+ and Gram- bacteria are markedly different from each other. How are phages equipped to breach the Gram+ envelope❓ 💡We report a baseplate structure uniquely adapted to infect Gram+ S. aureus. A 🧵⬇️ 1/8 #phagesky #cryoEM 🧪
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Tracy Palmer @proftracypalmer.bsky.social · 24/06/2026
Check out our latest T7SS toxin story. These reverse toxins aren’t as rare as we thought!
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Pilhofer Lab 🦠❄️🔬 @pilhoferlab.bsky.social · 01/06/2026
🛠️💉It's time for engineering contractile injection systems! @chipericson.bsky.social & @davidschaumann.bsky.social introduce programmable CIS - PROCIS, combining tail length control, non-native cargo loading, and cell retargeting all in one system! www.biorxiv.org/content/10.6... 🧵 1/5
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Tiago Costa @tcostalab.bsky.social · 28/05/2026
Our new study reveals how bacterial toxins are physically captured through a sequential, concentration-dependent assembly mechanism before secretion via the T6SS. Fantastic collaboration with @fillouxlab.bsky.social. Congrats Patricia & Ambre for leading this work. Paper here: shorturl.at/O31Vn
shorturl.at
Molecular basis of type VI secretion system effector loading - Nature Microbiology
Structural analysis reveals that the type VI secretion system effector cargo is enclosed within hexameric Hcp3 rings that form sequentially to enable effector loading and delivery by the Pseudomonas aeruginosa H3-type VI secretion system.
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Tung Le @tunglejic.bsky.social · 07/05/2026
@biorxiv-microbiol.bsky.social Who knew ParB-CTPase fold can kill!!! A protein fold best known for segregating chromosomes…can be transformed into a potent antibacterial toxin in some plant and animal pathogens. www.biorxiv.org/content/10.6...
biorxiv.org
Repurposing a chromosome segregation ParB-CTPase fold into an ATPase toxin for contact-dependent growth inhibition in plant and animal pathogens
Bacterial competition drives the evolution of antibacterial mechanisms, yet how new activities arise remains poorly understood. A major route to innovation is the reuse of pre-existing genetic systems, whereby conserved protein modules are repurposed in new biological contexts to generate new capabilities. Here, we show that the ParB-CTPase fold, a conserved nucleotide-binding module best known for its role in chromosome segregation, can be functionally repurposed as an antibacterial toxin. We identify ToxB, a ParB-like domain embedded within the polymorphic toxin region of contact-dependent inhibition systems and show that it functions as a potent antibacterial effector. Structural and biochemical analyses reveal that ToxB retains the core architecture of the ParB-CTPase fold but lacks DNA-binding capability and preferentially binds ATP. This shift in nucleotide specificity underpins a distinct mode of action, in which ATP binding and hydrolysis trigger rapid nucleoid compaction, chromosome segregation defects, oxidative stress, cell chaining, and ultimately cell lysis. ToxB also exhibits toxic activity in plant cells, suggesting that it targets conserved cellular processes. Together, these findings provide direct experimental evidence that the ParB-NTPase fold is biologically versatile and can be repurposed for biological roles fundamentally distinct from its ancestral function in DNA segregation. ### Competing Interest Statement The authors have declared no competing interest. Wellcome Trust, https://ror.org/029chgv08, 221776/Z/2/Z, 227755/Z/23/Z Biotechnology and Biological Sciences Research Council, https://ror.org/00cwqg982, BB/X01097X/1 Diamond Light Source, MX32728
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Augustinas Silale @augustsilale.bsky.social · 02/05/2026
Our study on Bacteroides iron piracy is now out in @pnas.org. We show how surface-exposed lipoproteins bind xenosiderophores with different iron-chelating chemistries and propose a mechanism for xenosiderophore import across the outer membrane. Lots of structures (mostly X-ray this time)!
doi.org
Structural basis of iron piracy by human gut Bacteroides | PNAS
Iron is an essential element that can be growth-limiting in microbial communities, particularly those present within host organisms. To acquire iro...
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Sam Benedict @sambenedict5.bsky.social · 27/03/2026
Unbelievably proud of the work that everyone has put into this paper. Really grateful for such fab colleagues! Mycobacteria continue to be (subjectively) the most interesting bacteria 🤭
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Protein Data Bank in Europe (PDBe) @pdbeurope.bsky.social · 06/03/2026
The Protein Data Bank (#PDB) has reached a new milestone: 250,441 entries in the archive, a record since its founding in 1971, all thanks to the efforts and contributions of the structural biology community. ⬇️ more ⬇️ www.wwpdb.org/news/news?ye... #StructuralBiology
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Leela Ghimire @leela-bg.bsky.social · 23/02/2026
Great getting to chat with legendary Fred Anston before his talk at @cbcb-newcastle.bsky.social! Lovely seminar with beautiful structures & fascinating stories about how DNA packs into capsid heads 🧬🧬 #StructuralBiology #bacteriophages #NewcastleUni
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heathmurraylab.bsky.social @heathmurraylab.bsky.social · 17/02/2026
my.corehr.com/pls/uoxrecru... Two Postdoctoral Research Associates in the Molecular Analysis of Bacterial Outer Membrane Protein Biogenesis BEN BERKS lab 🤩
my.corehr.com
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Kesha Josts @kjosts.bsky.social · 27/01/2026
Fully funded four-year PhD position available in my lab! Combining structural and synthetic biology to understand iron transport. Deadline 27th of Feb, get in touch for more details! www.findaphd.com/phds/project...
findaphd.com
Forged by Iron: Synthetic protein binders to decode bacterial iron transport mechanisms at Newcastle University on FindAPhD.com
PhD Project - Forged by Iron: Synthetic protein binders to decode bacterial iron transport mechanisms at Newcastle University, listed on FindAPhD.com
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Kate Beckham @kshbeckham.bsky.social · 23/01/2026
BBSSRC (NEEDL) funded PhD studentship in my lab co-supervised by @thecopperdoctor.bsky.social and @mycobacterium-ncl.bsky.social If you're interested in structural biology and membrane transport processes, check out www.findaphd.com/phds/project... deadline 27th of Feb! Get in touch for more info
findaphd.com
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Tracy Palmer @proftracypalmer.bsky.social · 23/01/2026
www.findaphd.com/phds/project... interested in bacterial antagonism? PhD opportunity in our team, see below. Please repost!
findaphd.com
Characterising antibacterial toxins in the food-borne pathogen Listeria monocytogenes at Newcastle University on FindAPhD.com
PhD Project - Characterising antibacterial toxins in the food-borne pathogen Listeria monocytogenes at Newcastle University, listed on FindAPhD.com
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Leela Ghimire @leela-bg.bsky.social · 25/11/2025
Happy to see work I contributed to during my MSc at @bioscienceleeds.bsky.social with Jennifer Tomlinson’s lab out in @pnas.org! Everyone Bluesky-less except @antoncalabrese.bsky.social www.pnas.org/doi/10.1073/... #AMR #MRSA #NMR
pnas.org
Inhibition of fusidic acid resistance through restricting conformational flexibility in domain III of EF-G | PNAS
Fusidic acid (FA) is one of few remaining antibiotics active against Methicillin-resistant Staphylococcus aureus. FusB confers resistance to FA by ...
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Kate Beckham @kshbeckham.bsky.social · 02/11/2025
Want to find ways to combat TB? Check out this PhD position 👇
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Ellie Boardman @ellieboardman.bsky.social · 14/10/2025
The CCP4 Northern Structural Biology Meeting is back again in Newcastle 6-7th November 2025. If you are a structural biologist/biochemist in the North of the UK please register and submit abstracts by this Friday 17th. nusbf.ncl.ac.uk/ccp4-norther...
nusbf.ncl.ac.uk
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Leela Ghimire @leela-bg.bsky.social · 03/10/2025
Big thank you to Dr. @cecile-exertier.bsky.social and Dr. Francesca Troilo for SPR training at ITACA-SB CNR in the beautiful Rome. 🇮🇹🇮🇹🇮🇹 Grateful for the opportunity to learn a lot in a couple of days & connect with fellow students! #ITACA.SB #CNR
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