Sign in

Ksenia Kuznetsova

@kkuznetsova.bsky.social
270 followers 171 following 7 posts

Project Manager | Outreach | (ex-)🦓🐟 Transcription researcher Database Curation @cdcode.bsky.social

PostsRepliesMedia
Reposted by Ksenia Kuznetsova
Human Technopole @humantechnopole.bsky.social · 24/06/2026
✨ Meet @dolliemae.bsky.social, our new Group Leader in the Molecular Cell Biology Research Centre. 🧬 Her Group will explore how protein mutations reshape cell behaviour and contribute to human disease, focusing on the nuclear envelope. Read more 👉 humantechnopole.it/en/news/intr...
humantechnopole.it
Introducing Dollie LaJoie - Human Technopole
Dollie LaJoie is a new Research Group Leader at Human Technopole, in the Molecular Cell Biology Research Centre. Her research explores how mutations in proteins can alter cell behaviour and contribute...
084
Reposted by Ksenia Kuznetsova
CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 16/06/2026
☀️v2.3 release is here! #CDCODE has grown - we've added new entries, cleaned up duplicates, and refreshed the c-mods page view! 📋See more release details: cd-code.org/release 📬Stay in the loop about condensate news - subscribe to our newsletter: tinyurl.com/CD-CODEnews #IDP #RBP #DatabaseUpdate
static.klipy.com
Cute Puppies Jump Out of Basket
Alt: Cute Puppies Released Out of Basket onto the Lawn
043
Ksenia Kuznetsova @kkuznetsova.bsky.social · 20/05/2026
Let's talk #condensates! #EESPhaseSeparation
051
Reposted by Ksenia Kuznetsova
Epigenetics at Helmholtz Munich @epihmgu.bsky.social · 02/04/2026
DEADLINE EXTENDED: Summer School on Chromatin Biology. Transform your knowledge and skills with this 2 week course focusing on ATAC-seq, ChIP-seq, ChIC/CUT&RUN, CUT&Tag, and bioinformatics analyses. Aug 17 - 29 Interested? Apply by April 18 bit.ly/4bZwHHR #abcam #summerschool #phd #helmholtzmunich
bit.ly
Summary - Summer School on Chromatin Biology: A Hands-On Expedition
0128
Reposted by Ksenia Kuznetsova
Alex Figueiredo @alexfig.eurosky.social · 30/03/2026
Looking for MSc student(s) to be involved in some really cool germ-free experiments with house sparrows at @niooknaw.bsky.social @animalecol-nioo.bsky.social ! 🐣🦠Get in touch if you're interested and please share :) nioo.knaw.nl/en/vacancies...
nioo.knaw.nl
Early-life microbiome assembly and its effects on bird phenotypes
We are looking for a motivated Masters/HBO/internship student to partake in upcoming microbiome manipulation experiments, investigating how this fascinating community impacts phenotypes in birds. Star...
02332
Reposted by Ksenia Kuznetsova
CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 19/03/2026
CD-CODE v2.2 RELEASE is live🤩 Our #database grew: 💡10 new #condensates 💡639 new #condensate - #protein connections 💡107 new c-mods 💡10 new #condensatopathies 🟣Find your favorite condensate cd-code.org and 👀see more details about the #release: cd-code.org/release #cdcode #IDP #RBP #DatabaseUpdate
084
Reposted by Ksenia Kuznetsova
Mihaly Badonyi @mbadonyi.bsky.social · 04/03/2026
My first manuscript in MPI colours! With @tothpetroczylab.bsky.social, we show that AlphaFold PAE-derived contact probabilities are well calibrated to the fraction of true interface contacts across experimentally determined protein dimers. www.biorxiv.org/content/10.6...
Two-panel calibration plot (two benchmark dimer datasets) comparing predicted interchain contact-probability bins (x-axis) with the observed fraction of native interfacial contacts (y-axis). Points follow the diagonal, indicating close agreement between predicted probabilities and true interface-contact fractions.
12710
Reposted by Ksenia Kuznetsova
Ariel Bazzini @bazzinilab.bsky.social · 10/03/2026
🐟 We are hiring a postdoc! Interested in RNA regulation, gene expression, and zebrafish embryogenesis? Join the Bazzini Lab at @stowersinstitute.bsky.social www.stowers.org/labs/bazzini... Please share! Details below 👇 #Postdoc #RNAbiology #zebrafish #devbio #Genomics
0149
Reposted by Ksenia Kuznetsova
Darío Lupiáñez @dariloops.bsky.social · 24/02/2026
🤩💪 Out now! 3D regulatory hubs in sex determination With @mamartirenom.bsky.social & Capel labs, led by @imotagom.bsky.social & @jrotwitguez.bsky.social 1️⃣ METALoci – explore #3DGenome 🧬 2️⃣ Non-coding region controlling Fgf9 🧩 3️⃣ Meis genes = new key players 🌟 👉 rdcu.be/e5sm2 1/n Bluetorial 👇
rdcu.be
Chromatin spatial analysis by METALoci unveils sex-determining 3D regulatory hubs
Nature Structural & Molecular Biology - METALoci, a new three-dimensional genome computational tool, reveals a major rewiring of regulatory interactions during sex determination. By combining...
16529
Reposted by Ksenia Kuznetsova
Alison Kickuth @alisonkickuth.bsky.social · 07/01/2026
Really happy to see my PhD first-author paper published in @nature.com! I’m very grateful to have worked with such a great team. Huge thanks to Urša Uršič, Michael Staddon, and Jan Brugués, as well as the @brugueslab.bsky.social, and the @poldresden.bsky.social and @mpi-cbg.de community!
58212
Reposted by Ksenia Kuznetsova
Máté Varga @mvargam.eurosky.social · 02/01/2026
In the same year (1936) a short publication in the Anatomischer Anzeiger he presented what is probably first ever microfilm-record of zebrafish development. He was able to follow development from fertilization to the end of epiboly. Clearly, there was much to be done, but history intervene. (4/7)
Screenshots of early zebrafish development from Edward Roosen-Runge’s 1936 paper published in Anatomischer Anzeiger.
133
Reposted by Ksenia Kuznetsova
Fena Ochs @fenaochs.bsky.social · 02/01/2026
We are looking for a Postdoc at the Center for Gene Expression in Copenhagen. Deadline for applications is the 11th of January. If you are interested in 3D chromatin, SMC complexes, and super-resolution microscopy, join us. www.nature.com/naturecareer...
nature.com
Postdocs at Center for Gene Expression in Department of Cellular and Molecular Medicine - Copenhagen, Hovedstaden (DK) job with University of Copenhagen | 12849488
We are looking for 2 or more highly motivated postdocs interested in ribosome biology, 3D chromatin organisation, or regulation of protein turnove...
02225
Reposted by Ksenia Kuznetsova
Sci.STEPS - Mentoring Program for Scientists @scisteps.bsky.social · 02/01/2026
Happy New 2026 Year from Sci.STEPS 💙 Our team is enjoying a final bit of our holiday break. We're excited to return in January to start matching process and preparing for #mentorship Season 2026! We have so much planned for the coming months and can't wait to share the journey with you.🎄
021
Reposted by Ksenia Kuznetsova
CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 17/12/2025
Our pre-holiday database update is live! 🎄CD-CODE v2.1 is here. Adding 🎁 11 new condensates 🎁 276 new proteins We now track a total of 13,983 condensate-protein relationships, plus 253 c-mods and 113 condensatopathies. Dive into the data and see more details about the release: cd-code.org/release
media.tenor.com
two dogs are riding a sled down a snow covered road .
ALT: two dogs are riding a sled down a snow covered road .
043
Reposted by Ksenia Kuznetsova
Society for Developmental Biology @socdevbio.bsky.social · 02/12/2025
🎄 Day 2 of the 24 Days of Development ✨🧬 This study uncovers a key role for foxl2l in zebrafish sex differentiation. 🐟 Loss of foxl2l blocks meiosis, causes germ cells to accumulate, and results in complete female-to-male sex reversal. ❄️🔍🌟 doi.org/10.1016/j.yd...
0104
Reposted by Ksenia Kuznetsova
EMBL @embl.org · 01/12/2025
Nobel laureate Svante Pääbo, Director at the Max Planck Institute for Evolutionary Anthropology in Leipzig, will deliver the 2026 EMBL Kafatos lecture. The lecture will explore how traces of Neanderthal DNA might shape human biology and health today. www.embl.org/news/embl-an...
An hourglass with DNA bases, set in front of a Neanderthal skull, with a map in the background showing human migration patterns, superimposed with a few cave paintings. Image Credit: Daniela Velasco/EMBL
13811
Reposted by Ksenia Kuznetsova
CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 14/11/2025
CD-CODE 2.0 is now published in @narjournal.bsky.social 🤩 CD-CODE 2.0 stores #biomolecular #condensates and their #protein and nucleic acid components and now includes repository of 🦠 infectious condensates, 💊 condensate-modulating compounds, and 🩺 condensatopathies 👀 doi.org/10.1093/nar/...
puzzle pieces are connected to represent CD-CODE database concept. landscape orientation (4 puzzle pieces top row, 5 puzzle pieces lower row). Top row: puzzles representing applicability, API, infectious condensate with logo representing pathogen cell and condensate, condensatopathies with a stethoscope logo, text: CD-CODE CrowDSourcing Condensate Database and Encyclopedia. Bottom tow: puzzles representing community, CD-CODE logo, Biomolecualr condensates with logos for species (human, frog, mouse), c-mods with chemical compound logo, DNA, proteins, RNA minimalistic logos.
1126
Reposted by Ksenia Kuznetsova
CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 11/06/2025
☀️summer is here - and so is CD-CODE v1.10 release!🤩 💡CD-CODE has now 719 manually curated #condensates (and ~40% are #human associated!) 💡Check out new #condensates and updated #protein - condensate connections at cd-code.org #Bioinformatics #DatabaseUpdate #IDR #RNP #RBP #cdcode
186
Reposted by Ksenia Kuznetsova
Nadine Vastenhouw @nvastenhouw.bsky.social · 05/06/2025
Thanks for the shoot-out @zebrafishrock.bsky.social! This beautiful work by the Hnisz lab characterized a micropeptide (killswitch) and used it to probe condensates. This opens the door to assess the function of condensates and @shivalidongre.bsky.social did just that in our beloved fish embryo.
162
Reposted by Ksenia Kuznetsova
Katja Rust @rustflylab.bsky.social · 06/06/2025
Apparently we do not have a JEDI starter pack yet. @fly-jedi.bsky.social and everyone else: let me know which other Junior European #Drosophila Investigators are missing! go.bsky.app/PcTGEMc
81912
Reposted by Ksenia Kuznetsova
Sci.STEPS - Mentoring Program for Scientists @scisteps.bsky.social · 01/05/2025
🥳 Wrap-up of #mentorship Season 3! Yesterday’s we reflected on 3 months of insights and achievements. Thanks to #mentors for their support and dedication 🙏 and good luck to #mentees with their career path! Our community is there for you beyond this season! 💙 Hope to see many in the next seasons 🤗
021
Ksenia Kuznetsova @kkuznetsova.bsky.social · 28/04/2025
Exciting that CD-CODE is now connected to THE go-to resource for everything protein-related! It's a great step forward, directing further developments and outlook for our project @tothpetroczylab.bsky.social @mscheremetjew.bsky.social 🥳
041
Reposted by Ksenia Kuznetsova
M. Scheremetjew @mscheremetjew.bsky.social · 28/04/2025
Very pleased that CD-Code is now cross-referenced by #UniProt and that we made it into the latest release: www.uniprot.org/release-note... Browse our manually curated #condensates at: cd-code.org
cd-code.org
CD-CODE
041
Reposted by Ksenia Kuznetsova
CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 28/04/2025
We're really excited that CD-CODE is now cross-referenced by #UniProt and has already been included in the latest release: www.uniprot.org/release-note... Spreading knowledge about #biomolecular #condensates 🥳 @ebi.embl.org @sib.swiss @mpi-cbg.de @tothpetroczylab.bsky.social @hymanlab.bsky.social
uniprot.org
UniProt
UniProt is the world's leading high-quality, comprehensive and freely accessible resource of protein sequence and functional information.
085
Reposted by Ksenia Kuznetsova
Itai Yanai @itaiyanai.bsky.social · 09/03/2025
Science delivers! Time & time again scientists make unexpected & important discoveries when following their curiousity! That's why we're organizing Woodstock Night Science, a reimagined conference to inspire us to new ideas. June 10-13 woodstock.img.cas.cz Join us! #TheConferenceToEndAllConferences
03214
Reposted by Ksenia Kuznetsova
CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 07/03/2025
🍃CD-CODE update v1.09 is here!🍃 👀Check out the new #biomolecular #condensates at cd-code.org 👀We're continuing to update #Protein - #condensate connections and resolve issues! Join us to share your #condensate #expertise as a contributor: cd-code.org/signup #Bioinformatics #DatabaseUpdate #IDR
media.tenor.com
a group of ducklings are running in a field .
ALT: a group of ducklings are running in a field .
053
Reposted by Ksenia Kuznetsova
Ana Janeva @anajaneva.bsky.social · 12/02/2025
I read the interviews last night and enjoyed them a lot - it shows that being a woman in science isn't a "one size fits all" experience, yet the challenges we face seem so universal. The system has work to do, but in the meantime, let's remember how many amazing and inspiring women surround us 👩‍🔬👩‍🔬
172
Reposted by Ksenia Kuznetsova
Sci.STEPS - Mentoring Program for Scientists @scisteps.bsky.social · 11/02/2025
🔬🌐 Happy #InternationalDayOfWomenAndGirlsInScience! Women and girls have historically faced—and continue to face—barriers in accessing education and pursuing careers in #STEM. We celebrate the achievements and #persistence of women and girls who are shaping the future of science and innovation!💡🌟
031
Reposted by Ksenia Kuznetsova
Sci.STEPS - Mentoring Program for Scientists @scisteps.bsky.social · 20/01/2025
It was #InternationalMentoringDay on Friday and we want to celebrate our mentors and mentees 🤩 #Mentorship isn't one-directional - it is a dynamic exchange where both mentor and mentee evolve together! As organizers - we are also constantly learning from the amazing Sci.STEPS community 💙
011
Reposted by Ksenia Kuznetsova
Nadine Vastenhouw @nvastenhouw.bsky.social · 20/01/2025
Calling on all RNA lovers! We are searching for phase-lock tubes to separate organic and aqueous phases during phenol:chloroform extractions of RNA because QIAGEN has discontinued the MaXtract tubes that we used to use. All input will be gratefully received! @doragrbavac.bsky.social
884
Reposted by Ksenia Kuznetsova
Ana Janeva @anajaneva.bsky.social · 26/01/2025
I am thrilled to share that our latest pre-print from the @evahoermanseder.bsky.social lab 🐸🧬, is now online! Check it out here: www.biorxiv.org/content/10.1... Highlights and key findings from our study in the thread below 👇
biorxiv.org
Digital Reprogramming Decodes Epigenetic Barriers of Cell Fate Changes
Fates of differentiated cells in our body can be induced to change by nuclear reprogramming. In this way, cells valuable for therapeutic purposes and disease modeling can be produced. However, the eff...
3339
Reposted by Ksenia Kuznetsova
Marlies Oomen @marliesoomen.bsky.social · 20/01/2025
Very excited to share our paper on Gene and Transposable Element expression in mammalian preimplantation development, online today! www.cell.com/cell/fulltex... A short thread to highlight some of our findings 🧵
711452
Reposted by Ksenia Kuznetsova
Meghana Oak @meghana-oak.bsky.social · 22/01/2025
✨ Excited to share my latest preprint on how H3K4 methylation promotes transcriptional memory from gametes to embryos across a transcriptionally silent window — crucial for proper zygotic genome activation and development. 🐸🧬✨ 📄 Check it out here:
doi.org/10.1101/2025... 👇 Highlights below
doi.org
H3K4 methylation-promoted transcriptional memory ensures faithful zygotic genome activation and embryonic development
In the life of a vertebrate embryo, gene expression is initiated for the first time at zygotic genome activation (ZGA). Maternally expressed transcription factors present in the embryo are essential f...
14820
Reposted by Ksenia Kuznetsova
Epigenetics at Helmholtz Munich @epihmgu.bsky.social · 15/01/2025
Best first bsky post posible 4us: 2025 INTERNSHIP CALL IS NOW OPEN! Ready for an adventure this summer? Join our 2025 #Epigenetics #SummerInternship at Helmholtz Munich! Dive into AI, stem cells, nutrition and cutting-edge research, while gaining hands-on experience. Apply now! 👉 bit.ly/40g1BWL
31915
Reposted by Ksenia Kuznetsova
Lennart Hilbert @lennarthilbert.bsky.social · 20/12/2024
Re-upping this great overview article from @mirlab.bsky.social lab "Dynamic microenvironments shape nuclear organization and gene expression" www.sciencedirect.com/science/arti...
Graphical abstract showing how an increase in local nuclear microenvironment can lead to an effective increase in transcription factor occupancy despite rapid unbinding of transcription factors from target binding sites in the genome.
1132
Reposted by Ksenia Kuznetsova
Sci.STEPS - Mentoring Program for Scientists @scisteps.bsky.social · 18/12/2024
We have closed our call for mentees for the third season of Sci.STEPS 🤩 This time with a record number of #international mentors and mentees 💙 #ThankYou for your enthusiasm! We are looking forward to the next season: to connecting everyone, meeting at events and discussions in the chat groups!
111
Reposted by Ksenia Kuznetsova
Ilya Flyamer @phlya.bsky.social · 14/12/2024
Last chance to apply for the 2025 edition of the Sci.STEPS program! Don't miss your opportunity to get career advice and guidance from one of our experienced mentors.
041
Reposted by Ksenia Kuznetsova
Sci.STEPS - Mentoring Program for Scientists @scisteps.bsky.social · 13/12/2024
🔊 Only a few days left to apply as a MENTEE for the 3rd Mentorship Season! 🌟 Submit your application by DECEMBER 15th! 🌟 Apply to gain access to helpful resources, personalized skill development, and networking opportunities that can support your scientific career path. www.scisteps.org/call-2025
011
Reposted by Ksenia Kuznetsova
Toth-Petroczy lab @tothpetroczylab.bsky.social · 12/12/2024
Our PICNIC tool predicts condensate-proteins regardless of their structural disorder across organisms @naturecomms.bsky.social. Congratulations to @annaha-poetry-art.bsky.social for developing the algorithm and to Hari @hymanlab.bsky.social for the experiments! www.nature.com/articles/s41...
nature.com
PICNIC accurately predicts condensate-forming proteins regardless of their structural disorder across organisms - Nature Communications
Here the authors report PICNIC (Proteins Involved in CoNdensates In Cells), a machine learning algorithm that predicts approximately 40–60% of proteins form condensates in various organisms, showing n...
0219
Reposted by Ksenia Kuznetsova
Emmanuel Cazottes @manucazottes.bsky.social · 09/12/2024
Navigating your PhD? Sci.STEPS connects you with experienced peers who've navigated these waters before. From career paths to research challenges, having someone to talk to makes the difference. Join Sci.STEPS and set your course! Apply now 🧭✨
042
Ksenia Kuznetsova @kkuznetsova.bsky.social · 09/12/2024
we've updated CD-CODE #condensate database to its ❄️winter❄️ version :) go check if your favorite condensate made it through! no? add it yourself and help us keep the CD-CODE updated 💟 cd-code.org/signup
cd-code.org
CD-CODE
010
Ksenia Kuznetsova @kkuznetsova.bsky.social · 09/12/2024
@scisteps.bsky.social is still looking for #mentees for the season 2025 (Feb-Apr) 👀 Calling #undergrads, #master students, #PhD students: This program offers a 3-month #mentorship experience, providing the chance to work with an amazing mentor and expand your network 🌐 Please share 💙
021
Reposted by Ksenia Kuznetsova
Ilya Flyamer @phlya.bsky.social · 06/12/2024
After a month of hard work to create a pool of over 50 fantastic mentors, we have opened the call for mentee applications! If you are an early career researcher and need help navigating the career path (be it academia or industry, or anything else), see if there is a mentor for you and apply!
11411
Reposted by Ksenia Kuznetsova
Sci.STEPS - Mentoring Program for Scientists @scisteps.bsky.social · 06/12/2024
How a #mentor can help your scientific career?🌟 Mentors help you avoid common pitfalls🕳️, review your application materials📘, share personal experiences🫶, guide to evaluate your skills👀. Together, you celebrate your milestones (big and small!)! Such amazing mentors joined us this time ⤵️
111
Reposted by Ksenia Kuznetsova
Sci.STEPS - Mentoring Program for Scientists @scisteps.bsky.social · 04/12/2024
📢We have opened the call for #mentees! Apply and become a mentee: scisteps.org/call-2025 Sci.STEPS mentors share with you their knowledge and insights on studying abroad, navigating relocations, building careers, and transitioning between fields!💙 @phdvoice.bsky.social @dragonflymh.bsky.social
021
Reposted by Ksenia Kuznetsova
Sci.STEPS - Mentoring Program for Scientists @scisteps.bsky.social · 29/11/2024
Are you doing a #PhD and asking: "Should I continue or leave?" - you are not alone💙 It's a unique and demanding journey: to move forward, you need to pause and reflect deeply - even if that means considering to quit. Our new #sciTIPS story about navigating this tough decision: tinyurl.com/e36wawcu
011
Ksenia Kuznetsova @kkuznetsova.bsky.social · 20/11/2024
Next to my day job curation @cdcode.bsky.social, by night 🦸‍♀️😄 I am co-organising scientific career mentorship program Sci.STEPS @scisteps.bsky.social - we've just closed the call for mentors and will open the call for mentees soon! very much looking forward to the next Season in February 2025 💙
020
Reposted by Ksenia Kuznetsova
Robert Haase @haesleinhuepf.bsky.social · 19/11/2024
Hi #BioImaging + #BioImageAnalysis folks, we need your help! If you have some spare minutes, please fill out the 2024 community survey: docs.google.com/forms/d/e/1F...
media.tenor.com
a group of cartoon cats standing next to each other with question marks behind them
ALT: a group of cartoon cats standing next to each other with question marks behind them
11914
Reposted by Ksenia Kuznetsova
CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 18/11/2024
Thank you, @rnadavid.bsky.social for compiling this starter pack 🤩 Join the condensate crowd! #condensates #phaseseparation #granules #IDPs
032
Reposted by Ksenia Kuznetsova
Ilya Flyamer @phlya.bsky.social · 17/11/2024
Last day to apply as a mentor to the Sci.STEPS program! @academic-chatter.bsky.social #mentoring #science
075