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CrowDsourcing COndensate Database & Encyclopedia

@cdcode.bsky.social
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CD-CODE is a comprehensive, manually-curated database for biomolecular condensates and proteins developed by Agnes Toth-Petroczy lab @tothpetroczylab.bsky.social @mpi-cbg.de cd-code.org

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CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 16/06/2026
☀️v2.3 release is here! #CDCODE has grown - we've added new entries, cleaned up duplicates, and refreshed the c-mods page view! 📋See more release details: cd-code.org/release 📬Stay in the loop about condensate news - subscribe to our newsletter: tinyurl.com/CD-CODEnews #IDP #RBP #DatabaseUpdate
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CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 20/05/2026
Are you at the #EMBO @embl.org #EESPhaseSeparation symposium? Let's meet at poster # 105 (Follow Helix A!) today 🙌 Thanks to the organizers for this opportunity to interact with the #condensate #research community! @events.embl.org @mpi-cbg.de @tothpetroczylab.bsky.social cd-code.org
cd-code.org
CD-CODE Database
Scientific database for biomolecular condensates research
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CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 19/03/2026
CD-CODE v2.2 RELEASE is live🤩 Our #database grew: 💡10 new #condensates 💡639 new #condensate - #protein connections 💡107 new c-mods 💡10 new #condensatopathies 🟣Find your favorite condensate cd-code.org and 👀see more details about the #release: cd-code.org/release #cdcode #IDP #RBP #DatabaseUpdate
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Mihaly Badonyi @mbadonyi.bsky.social · 04/03/2026
My first manuscript in MPI colours! With @tothpetroczylab.bsky.social, we show that AlphaFold PAE-derived contact probabilities are well calibrated to the fraction of true interface contacts across experimentally determined protein dimers. www.biorxiv.org/content/10.6...
Two-panel calibration plot (two benchmark dimer datasets) comparing predicted interchain contact-probability bins (x-axis) with the observed fraction of native interfacial contacts (y-axis). Points follow the diagonal, indicating close agreement between predicted probabilities and true interface-contact fractions.
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CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 17/12/2025
Our pre-holiday database update is live! 🎄CD-CODE v2.1 is here. Adding 🎁 11 new condensates 🎁 276 new proteins We now track a total of 13,983 condensate-protein relationships, plus 253 c-mods and 113 condensatopathies. Dive into the data and see more details about the release: cd-code.org/release
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Toth-Petroczy lab @tothpetroczylab.bsky.social · 17/11/2025
Our enhanced knowledge base for condensates is online @narjournal.bsky.social! Congratulations to the first authors @kkuznetsova.bsky.social and @mscheremetjew.bsky.social and all co-authors & curators! What a wonderful team effort to advance condensate research! 🤩 @mpi-cbg.de @hymanlab.bsky.social
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CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 14/11/2025
CD-CODE 2.0 is now published in @narjournal.bsky.social 🤩 CD-CODE 2.0 stores #biomolecular #condensates and their #protein and nucleic acid components and now includes repository of 🦠 infectious condensates, 💊 condensate-modulating compounds, and 🩺 condensatopathies 👀 doi.org/10.1093/nar/...
puzzle pieces are connected to represent CD-CODE database concept. landscape orientation (4 puzzle pieces top row, 5 puzzle pieces lower row). Top row: puzzles representing applicability, API, infectious condensate with logo representing pathogen cell and condensate, condensatopathies with a stethoscope logo, text: CD-CODE CrowDSourcing Condensate Database and Encyclopedia. Bottom tow: puzzles representing community, CD-CODE logo, Biomolecualr condensates with logos for species (human, frog, mouse), c-mods with chemical compound logo, DNA, proteins, RNA minimalistic logos.
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CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 11/06/2025
☀️summer is here - and so is CD-CODE v1.10 release!🤩 💡CD-CODE has now 719 manually curated #condensates (and ~40% are #human associated!) 💡Check out new #condensates and updated #protein - condensate connections at cd-code.org #Bioinformatics #DatabaseUpdate #IDR #RNP #RBP #cdcode
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Mariona Esquerda Ciutat @marionamec.bsky.social · 28/05/2025
😊 I had the pleasure to turn this exciting @cellpress.bsky.social paper into a video-abstract. Check it out! youtu.be/0REvwcuOao8 Thanks to the authors for writing the script and to @hymanlab.bsky.social and to @mpi-cbg.de for sharing it!
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CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 28/04/2025
We're really excited that CD-CODE is now cross-referenced by #UniProt and has already been included in the latest release: www.uniprot.org/release-note... Spreading knowledge about #biomolecular #condensates 🥳 @ebi.embl.org @sib.swiss @mpi-cbg.de @tothpetroczylab.bsky.social @hymanlab.bsky.social
uniprot.org
UniProt
UniProt is the world's leading high-quality, comprehensive and freely accessible resource of protein sequence and functional information.
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Max Planck Institute of Molecular Cell Biology and Genetics @mpi-cbg.de · 25/03/2025
The @tothpetroczylab.bsky.social together with the @albertilab-tud.bsky.social developed SHARK-capture to detect recurring patterns (motifs) in intrinsically disordered protein regions (IDRs). Publication in Protein Science. www.mpi-cbg.de/news-outreac...
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Protein Data Bank in Europe (PDBe) @pdbeurope.bsky.social · 12/03/2025
🚀 Exciting Opportunity 🚀 Do you have a passion for structural biology? We're hiring at @PDBeurope! 🌟 Apply now to help annotate biological data 💻 🔬 🔗 embl.wd103.myworkdayjobs.com/en-US/EMBL/d... Closing date: April 6, 2025 #JobOpening #StructuralBiology #Bioinformatics #ScienceJobs #Hiring
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CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 07/03/2025
🍃CD-CODE update v1.09 is here!🍃 👀Check out the new #biomolecular #condensates at cd-code.org 👀We're continuing to update #Protein - #condensate connections and resolve issues! Join us to share your #condensate #expertise as a contributor: cd-code.org/signup #Bioinformatics #DatabaseUpdate #IDR
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Max Planck Institute of Molecular Cell Biology and Genetics @mpi-cbg.de · 05/02/2025
The research group of Agnes Toth-Petroczy @tothpetroczylab.bsky.social is looking for an experimental Postdoc (m/f/d) in protein evolution of biomolecular condensates. Apply now! careers.mpi-cbg.de/jobs/5312959...
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Max Planck Institute of Molecular Cell Biology and Genetics @mpi-cbg.de · 28/01/2025
Follow our research group leaders @mpicbg.bsky.social to get updates on their science activities! go.bsky.app/3gGPAgM
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Max Planck Institute of Molecular Cell Biology and Genetics @mpi-cbg.de · 28/01/2025
Get news from science institutes and universities, located in Dresden, Germany. Please add missing ones in the comments. go.bsky.app/BgRhagp
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Max Planck Institute of Molecular Cell Biology and Genetics @mpi-cbg.de · 21/01/2025
We are looking for a Student Helper in International Culture and Policies. Apply now and join us! careers.mpi-cbg.de/jobs/5276094...
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Toth-Petroczy lab @tothpetroczylab.bsky.social · 12/12/2024
Our PICNIC tool predicts condensate-proteins regardless of their structural disorder across organisms @naturecomms.bsky.social. Congratulations to @annaha-poetry-art.bsky.social for developing the algorithm and to Hari @hymanlab.bsky.social for the experiments! www.nature.com/articles/s41...
nature.com
PICNIC accurately predicts condensate-forming proteins regardless of their structural disorder across organisms - Nature Communications
Here the authors report PICNIC (Proteins Involved in CoNdensates In Cells), a machine learning algorithm that predicts approximately 40–60% of proteins form condensates in various organisms, showing n...
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CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 09/12/2024
✨Winter CD-CODE update to v1.08!✨ ❄️ New #biomolecular #condensates added (total ⚪: 680) ❄️ #Protein - #condensate connections updated ❄️ Species attributes fixed 🤩 👀Check the current version here: cd-code.org Join us to become a contributor: cd-code.org/signup #DatabaseUpdate #Bioinformatics #IDR
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CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 04/12/2024
Congratulations, Agnes! 🤩
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Kresten Lindorff-Larsen @lindorfflarsen.bsky.social · 25/11/2024
If you are a PhD student and like protein disorder (or want to learn more), Birthe Kragelund @bbkrage.bsky.social and Kristian Strømgaard are organizing a PhD course on How IDPs work 🧶🧬🧪 Note the cost if you are not at a Danish university. Details: phdcourses.ku.dk/DetailKursus...
Flyer for the course Keeping up with the interactome - How IDPs work including a list of speakers:
Professor Tanja Mittag, St Jude Children’s Hospital, Memphis, US
Professor Kresten Lindorff-Larsen, BIO, SCIENCE, UCPH
Professor Ylva Ivarsson, Uppsala University, Sweden
Dr. Michael Wehr, Systasy Bioscience, Munich, Germany
Professor Zsuzsanna Dostztányi, Eötvös Loránd University, Hungary
Professor Kristian Strømgaard, HEALTH, UCPH
Professor Stefano Gianni, Sprienza University of Rome, Italy
Professor Per Jemth, Uppsala University, Sweden
Dr. Franziska Schöppe, Novo Nordisk A/S, Denmark
Professor Benjamin Schuler, University of Zurich, Switzerland
Professor Alfonse De Simone, University of Naples, Italy
Dr. Malene Ringkjøbing Jensen, CNRS, Grenoble, France
Alleyn Plowright, Chief Scientific Officer, Pangea Bio, London UK
Professor Birthe B. Kragelund, BIO, SCIENCE, UCPH
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SpruijtLab @spruijtlab.bsky.social · 18/11/2024
Hello Bluesky! We're thrilled to announce an open PhD position on exploring controlling condensate membrane attachment and exocytosis! Collaborate across Europe in the ComeInCell EU network. Apply now! Details: www.comeincell.org & www.ru.nl/en/working-a...
comeincell.org
ComeInCell – Doctoral Network on Integrative Synthetic Cell Design
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CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 18/11/2024
Thank you, @rnadavid.bsky.social for compiling this starter pack 🤩 Join the condensate crowd! #condensates #phaseseparation #granules #IDPs
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Sophie G Martin @sophiemartinlab.bsky.social · 23/10/2024
The Martin lab has an open postdoc position at the interface of #cytoskeleton and #condensate biology, in a fantastic research community! If interested, do not hesitate to contact us: mocel.unige.ch/research-gro... Please RT!
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CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 14/11/2024
🔊☎️Calling the hive mind of the #Condensate Community of #bluesky: Join us in curating the CD-CODE! Do you have a favorite condensate or are researching some that are not yet in cd-code.org? We want your input and expertise!🧠 🔗Easy sign-up here: cd-code.org/signup and add a new condensate 🎦⤵️
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CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 13/11/2024
🚨Condensate of the Month is Stress Granule! #StressGranules (#SGs) are dynamically forming cytoplasmic condensates that form in response to various cellular stresses. 🤩In CD-CODE there are more than 10 species and more than 1300 #protein associations described for SGs.
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CrowDsourcing COndensate Database & Encyclopedia @cdcode.bsky.social · 13/11/2024
🍂🌿Latest #CDCODE release: 🥳Version 1.07 is here: cd-code.org 🌟We focused on improving #species attributions and updating missing #condensate features. Help us with your condensate expertise!🧠 Join us to become a contributor: cd-code.org/signup
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