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Kasper D Hansen

@kasperdhansen.bsky.social
2.1K followers 118 following 64 posts

Professor @ JHU, statistical genomics, www.hansenlab.org

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Reposted by Kasper D Hansen
Johns Hopkins Dept of Biostatistics @jhubiostat.bsky.social · 22/09/2026
Come work with the Johns Hopkins Dept. of Biostatistics! We are currently hiring two open positions: Postdoctoral Fellow (Data Science and AI in Health & Medicine) and Assistant Professor (tenure track). Learn more online: publichealth.jhu.edu/departments/...
We Are HIRING
Join Our Department

Open Positions:
Assistant Professor
Postdoc: Data Science and AI in Health & Medicine
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Reposted by Kasper D Hansen
American Society of Human Genetics (ASHG) @geneticssociety.bsky.social · 04/09/2026
@ajhgnews.bsky.social sat with Kimberley Anderson, PhD, in the latest "Inside AJHG" to discuss her recently published paper, “Androgens mediate sexual dimorphism in Pilarowski-Bjornsson syndrome.” ➡️ bit.ly/4hbuxsp #ASHG #HumanGenetics #GeneticsDiscoveries
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Needhi Bhalla 💅🏽 @needhibhalla.bsky.social · 03/09/2026
absolute fuckers "Trump officials at NIH disclosed the existence of DoD’s efforts only after being pressed for information by House Appropriations Committee Democrats." democrats-appropriations.house.gov/news/press-r...
democrats-appropriations.house.gov
Defense Officials Attempt to Raid NIH Funds to Cover Department of Defense Activities
House Appropriations Committee Ranking Member Rosa DeLauro (D-CT-03) has learned that officials at the Department of Defense (DoD) are working to divert billions of dollars from the National Institute...
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The American Journal of Human Genetics @ajhgnews.bsky.social · 03/09/2026
🧬New from Anderson et al! 📄Androgens mediate sexual dimorphism in Pilarowski-Bjornsson syndrome
cell.com
Androgens mediate sexual dimorphism in Pilarowski-Bjornsson syndrome
Pilarowski-Björnsson syndrome (PILBOS) is a neurodevelopmental disorder caused by pathogenic variants in CHD1. Here, we characterize a large PILBOS cohort and describe their variants. Using a patient-specific mouse model, we demonstrate that androgens protect against CHD1 deficiency, suggesting a mechanism for sex-specific penetrance in an autosomal disorder.
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Kasper D Hansen @kasperdhansen.bsky.social · 24/08/2026
The new boquerones from Trader Joe are excellent.
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Jenna Norton @jenna-m-norton.bsky.social · 20/08/2026
“Flailing regimes dehumanize minorities to distract from their failures.” - Julia Curlee www.theatlantic.com/magazine/202...
theatlantic.com
The Wrong Kind of American
The Trump White House needed me—until the fact that I am trans became public.
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sebmal @mrdo.pro · 28/07/2026
WARNING! TACO BELL ADVISES NEW TACO SO GOOD IT IS BEYOND THEIR CONTROL, COULD REPLACE ALL OTHER FOOD BEFORE HUMANS CAN CONTAIN IT. URGES CONGRESS TO GIVE THEM MORE MONEY SO THEY CAN DEVELOP ANTI-TACO SAFEGUARDS
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Leandros Boukas @leandrosboukas.bsky.social · 16/07/2026
Together with Hans Bjornsson (and @kasperdhansen.bsky.social, and others) we have spent many years thinking about the molecular basis of Mendelian disorders caused by variants in chromatin regulators. We have written a review where we discuss our thoughts: www.tandfonline.com/doi/full/10....
tandfonline.com
Mendelian disorders of the epigenetic machinery: a decade of insights into the molecular basis
The Mendelian disorders of the Epigenetic Machinery (MDEMs), or Chromatinopathies, are now understood to be a collectively common cause of childhood neurodevelopmental delays and intellectual disab...
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Michael Hoffman @michaelhoffman.bsky.social · 11/06/2026
We need to think bigger for our Project 2029. Current Democratic efforts don't rise to the challenge. Worth reading this column by @jamellebouie.net even moreso than usual.
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Michael Okun @michael-okun.bsky.social · 10/06/2026
I’ve officially resigned as Associate Editor for Frontiers in Systems Neuroscience. It used to be a reputable journal, but became a case study in how forced automation destroys academic integrity. 👇
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Carl T. Bergstrom @carlbergstrom.com · 04/06/2026
11. Addendum: here are the words characteristic of LLMs. Notice anything? It reads like an email from our upper administration.
Table S1. List of 228 Focal Words disproportionately associated with LLM outputs.3
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achieves contextualize exacerbates integrates oversight showcasing
achieving contextually exacerbating integrating oversimplify signifying
acknowledges cornerstone exceeding intensifies paving situates
adaptable crucial excelled intensifying pinpointing situating
addressing culminating excelling interpretability pivotal sourced
adept delineates excels interpretable poised strategically
adeptly delve exemplifies intricacies posits streamline
adjustments delved exhibits intricacy practicality streamlined
adjusts delves facilitating intricate preserving streamlining
advancements delving featuring intricately primarily strengthens
advancing dependencies formidable introduces prioritise struggle
advocating diminishes fortifying juncture prioritize stylistic
aiding discernible fostering leverage prioritizes surpasses
align downturns fosters leverages prioritizing surpassing
aligning dynamically foundational leveraging promise symbolizing
aligns elucidates frameworks meticulous prowess synthesizes
alongside elucidating garnered meticulously reaffirming thereby
amidst emphasising garnering mitigate realm thoroughness
amplifies emphasizes grappling mitigates redefines thoughtfully
avenues emphasizing groundbreaking mitigating refine thrives
boasting employs harnessing multifaceted refines timelines
boasts enabling heighten navigates refining transcends
bolster encapsulates heightened navigating reflecting transitioning
bolstering encompass heightening necessitate reinforces underexplored
bolsters encompassed heightens necessitates reliance undermines
broader encompasses highlighting necessitating renowned underperform
capitalizes encompassing highlights notable reshapes underperformed
captivating endeavors hinges notably reshaping underpins
captures enhance imperatives nuanced revolutionize underscore
capturing enhancements inadequately nuances revolutionizing underscored
categorizes enhance…
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Kasper D Hansen @kasperdhansen.bsky.social · 03/06/2026
Absolutely phenomenal infrastructure work by Dirk, one of the giants of the R community. This kind of work is of high importance, but (usually) does not get the recognition it deserves. Thank you for your continued commitment to excellence.
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Kasper D Hansen @kasperdhansen.bsky.social · 28/05/2026
As I read it, there are some big changes sneaking into this notice.
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Robin Andersson @randersson.bsky.social · 19/05/2026
Excited to see this preprint out from the lab! Congrats to @heinarsson.bsky.social, Natsuda, @robertkrautz.bsky.social, and all co-authors involved in this major effort on developing nucCAGE and PRIME, and on evaluating transcription initiation-defined regulatory elements for variant interpretation!
biorxiv.org
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Kasper D Hansen @kasperdhansen.bsky.social · 11/05/2026
Really interesting critique of a paper in Science. By now it is well established that you need to compare to simple baselines before making big claims.
i.science
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Nicholas Mancuso @nmancuso.bsky.social · 07/05/2026
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Bioconductor @bioconductor.bsky.social · 30/04/2026
🚀 We’re excited to share the release of Bioconductor 3.23, featuring: ✅2418 software packages (94 new) ✅437 experiment data packages (5 new) ✅928 annotation packages ✅8 books (2 new) ✅28 workflows 🔗 Please see the full release announcement here: bioconductor.org/news/bioc_3_...
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Darren Dahly @statsepi.bsky.social · 23/04/2026
JPAI expresses concern that AI will generate even more papers than he does. 😜
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Benoit Bruneau @benoitbruneau.bsky.social · 21/03/2026
this truly excellent. Having lost Tanya 3.5 years ago, my father a few weeks ago, and my dog last week (not kidding), this is timely
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Kasper D Hansen @kasperdhansen.bsky.social · 06/03/2026
This is really impressive.
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Jenna Norton @jenna-m-norton.bsky.social · 06/03/2026
Current NIH leadership want you to think they are using rigorous, consistent & scientific processes to screen studies to align them with agency priorities. But the process that they have put down on paper is a sham. It’s important to know NIH is not following its own guidance. Here’s why: 🧵1/
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The American Journal of Human Genetics @ajhgnews.bsky.social · 05/03/2026
🧬 New from @leandrosboukas.bsky.social & co 📄Identification of de novo variants from parent-proband duos via long-read sequencing 🖥️ github.com/sbergercnmc/...
cell.com
Identification of de novo variants from parent-proband duos via long-read sequencing
Determining de novo status is often what upgrades a variant from VUS to pathogenic, but it has not been possible without sequencing both biological parents. We developed, extensively evaluated, and ap...
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Michelle Cohen @docmcohen.medsky.social · 28/02/2026
The ultimate goal of wellness consumerism is to shift all responsibility to the individual health consumer who then gets the "freedom" of navigating an unregulated snake oil market.
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Bruce Springsteen @brucespringsteen.net · 28/01/2026
I wrote this song on Saturday, recorded it yesterday and released it to you today in response to the state terror being visited on the city of Minneapolis. It’s dedicated to the people of Minneapolis, our innocent immigrant neighbors and in memory of Alex Pretti and Renee Good. Stay free
youtu.be
Bruce Springsteen - Streets Of Minneapolis (Official Audio)
YouTube video by Bruce Springsteen
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Hongkai Ji @jihk.bsky.social · 19/12/2025
Glad to share our benchmark study in Genome Biology on highly variable gene (HVG) selection methods for single-cell RNA-seq. We show that a hybrid strategy performs best, now implemented in the mixhvg R package. rdcu.be/eUfjt
rdcu.be
A systematic evaluation of highly variable gene selection methods for single-cell RNA-sequencing
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Jake Berg @jacobsberg.bsky.social · 18/12/2025
Gift link, probably the funniest thing the Wall Street Journal has done this year.
wsj.com
We Let AI Run Our Office Vending Machine. It Lost Hundreds of Dollars.
An AI agent ran a snack operation in the WSJ newsroom. It gave away a free PlayStation, ordered a live fish—and taught us lessons about the future of AI.
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James McInerney @jomcinerney.bsky.social · 10/12/2025
This is shocking stuff. John Quackenbush has been brilliant since forever. www.statnews.com/2025/12/05/r...
statnews.com
His lab was humming with discovery. After one year under Trump, it’s almost silent
John Quackenbush built a lab that is at the forefront of human genetics research and bioinformatics. Trump administration cuts have put it in danger of collapse.
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Brendan Nyhan @brendannyhan.bsky.social · 20/11/2025
This is real x.com/grok/status/.... Yangtze record swim times but in LLM form
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Nick Brown @steamtraen.eu · 07/11/2025
Oops. Ooooooooooooops. I do hope that nobody has been given or denied a job/promotion based on their SpringerNature citation counts in the past 15 years. arxiv.org/pdf/2511.01675 h/t @nathlarigaldie.bsky.social
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Jenny Bryan @jennybryan.bsky.social · 31/10/2025
Will definitely include this example in my next talk on how to name files! ✅ Full marks for "make it easy to guess what the heck something is, based on it name".
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Bioconductor @bioconductor.bsky.social · 31/10/2025
🚀 Bioconductor 3.22 is released! Thanks to all developers and community members for contributing to the project! 🔗 Please see the full release announcement here: bioconductor.org/news/bioc_3_...
bioconductor.org
Bioconductor - Bioconductor 3.22 Released
The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and…
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Keri Martinowich @martinowk.bsky.social · 29/10/2025
We are hiring for a PhD-level Staff Scientist to join our teams in the Translational Neuroscience Division @lieberinstitute.bsky.social. This is an exciting opportunity to work at the intersection of human 🧠 neuroanatomy and molecular neuroscience recruiting.paylocity.com/recruiting/j...
recruiting.paylocity.com
Lieber Institute For Brain Development - Staff Scientist I, Translational Neuroscience
A little about us:The Lieber Institute for Brain Development (LIBD) was established in 2010 to plot a new course in biomedical research that would change the lives of individuals affected with develop...
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Maxim Greenberg @maxvcg.bsky.social · 24/10/2025
This 1980s anti-drug ad, but about screen time
media.tenor.com
a close up of a young man 's face with headphones on .
ALT: a close up of a young man 's face with headphones on .
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Lindsay Rizzardi, PhD @lrizzardi.bsky.social · 16/10/2025
Today at #ASHG25 I will talk about the work of a talented graduate student Dev Raj Bhattarai on cell type-specific isoform expression in Alzheimer's disease at the @nanoporetech.com Education Session (12pm Rm 153). Dev will also present his work today at poster 9228T.
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Kasper D Hansen @kasperdhansen.bsky.social · 16/10/2025
Today at #ASHG2025 Adam Davidovich will talk about our work on inheritance of DNA methylation patterns in mice with some interesting biology, including (to our knowledge) the first paramutation naturally occurring in mammals. Room 210C at 11am.
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Kasper D Hansen @kasperdhansen.bsky.social · 15/10/2025
I’m at #ashg2025 for a few days. Reach out if you want to chat.
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Kasper D Hansen @kasperdhansen.bsky.social · 14/10/2025
It’s the time of the year where 98% of my feed will become posts from @michaelhoffman.bsky.social on ASHG
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Ben Langmead @benlangmead.bsky.social · 14/10/2025
New tool "bwt-svg" for making illustrations of the BWT and the many auxiliary arrays and other structures related to it. Pyodide-based no-installation-necessary interface here: benlangmead.github.io/bwt-svg/. (H/t to @robert.bio for pointing me to pyodide!) Full repo: github.com/benlangmead/....
Illustration of Burrows-Wheeler Transform and many auxiliary structures from the input string how$now$brown$cow$#
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Leandros Boukas @leandrosboukas.bsky.social · 11/10/2025
Looking forward to presenting duoNovo at ASHG this week. We use long-read sequencing to detect de novo variants without having to sequence both parents. It's conceptually straightforward, and performs very accurately among variants likely to be clinically relevant. www.medrxiv.org/content/10.1...
medrxiv.org
Identification of de novo variants from parent-proband duos via long-read sequencing
While de novo variants cause many Mendelian disorders, their detection currently requires sequencing of the proband and both biological parents. This is not feasible when only one parent is available,...
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Dirk Eddelbuettel @eddelbuettel.com · 10/10/2025
RcppArmadillo 15 CRAN Transition: Offering Office Hours Offering office hours to help in updating #rstats CRAN packages to RcppArmadillo 15.0.2 given CRAN 'Deadlines' for a number of the reverse-dependency packages. Details and booking link at blog post. dirk.eddelbuettel.com/blog/2025/10...
Screenshot one of two of blog post at https://dirk.eddelbuettel.com/blog/2025/10/10#rcpparmadillo_15_transition_office_hours detailing offer of office hours to help with CRAN deadlines for packages depending on RcppArmadilloScreenshot two of two of blog post at https://dirk.eddelbuettel.com/blog/2025/10/10#rcpparmadillo_15_transition_office_hours detailing offer of office hours to help with CRAN deadlines for packages depending on RcppArmadillo
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Patrick Monahan @pattymo.com · 14/08/2025
This is a masterpiece. Simply excellent www.instagram.com/reel/DMVGMIC...
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Jack Bailey @jack-bailey.co.uk · 07/08/2025
Didn’t want to believe this was true. It’s true.
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Cedric Boeckx @cedricboeckx.bsky.social · 06/08/2025
Good discussion & study-design recommendations in this new preprint by @mikelove.bsky.social @klmohlke.bsky.social & colleagues: Higher eQTL power reveals signals that boost GWAS colocalization 🧪🧬 www.biorxiv.org/content/10.1...
biorxiv.org
Higher eQTL power reveals signals that boost GWAS colocalization
Expression quantitative trait locus (eQTL) studies in human cohorts typically detect at least one regulatory signal per gene, and have been proposed as a way to explain mechanisms of genetic liability...
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Amy Goldberg @amygoldberg.bsky.social · 03/08/2025
My first conference ever was at IPAM as an undergrad, bringing me into scientific research. When I branched out into new topics, my first conference as new faculty was also at IPAM. My R35 was suspended. A lot of personal feelings, but more I worry for the future of the country.
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Kasper D Hansen @kasperdhansen.bsky.social · 25/06/2025
Nick Eagles on analyzing Visium HD at #GBCC2025
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Michael Love @mikelove.bsky.social · 25/06/2025
Stefano @stemang.bsky.social showing off #tidyomics at the #GBCC2025 !
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Kasper D Hansen @kasperdhansen.bsky.social · 24/06/2025
Quote of the day from #GBCC2025 “It can fail. But, sometimes, it works”
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Kasper D Hansen @kasperdhansen.bsky.social · 05/06/2025
Worth reading
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Katie Mack @astrokatie.com · 03/06/2025
I've seen folks talk about how "in four years" they'll be able to get back to their planned projects and I really don't think that's going to work out. People & projects losing funding now will not be able to hit pause and come back once funding is restored. Hard-won progress & capacity will be lost
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